38RR | pdb_000038rr

Cryo-EM structure of Sr01-080, a denovo designed borneol dehydrogenase

PDB DOI: https://doi.org/10.2210/pdb38RR/pdb
EM Map EMD-79087: EMDB EMDataResource

Classification: OXIDOREDUCTASE
Organism(s): synthetic construct
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2026-09-15 Released: 2026-10-07
Deposition Author(s): Miles, U., McShan, A., McManus, C., Kamerlin, S.C.L., Di Geronimo Quintero, B.
Funding Organization(s): Other government, Other private

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.17 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

Starting Model: in silico
View more details

wwPDB Validation 3D Report Full Report

Validation slider image for 38RR

This is version 1.0 of the entry. See complete history.

Literature

Full-Atom MPNN Based Redesign of Plant Dehydrogenase Enables Thermostability Enhancement Without Loss of Stereoselectivity

Miles, U., McShan, A., McManus, C., Kamerlin, S.C.L., Di Geronimo Quintero, B.

To be published.

Macromolecule Content

Total Structure Weight: 112.86 kDa
Atom Count: 7,396
Modeled Residue Count: 996
Deposited Residue Count: 1,068
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Sr01-080	A, B, C, D	267	synthetic construct	Mutation(s): 0
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.17 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX	2.0_5824
RECONSTRUCTION	cryoSPARC

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2026-10-07

Deposition Author(s):

Kamerlin, S.C.L.

Di Geronimo Quintero, B.

Funding Organization	Location	Grant Number
Other government	United States	--
Other private	United States	--

Revision History (Full details and data files)

Version 1.0: 2026-10-07
Type: Initial release