2V1L | pdb_00002v1l

Structure of the conserved hypothetical protein VC1805 from pathogenicity island VPI-2 of Vibrio cholerae O1 biovar eltor str. N16961 shares structural homology with the human P32 protein

PDB DOI: https://doi.org/10.2210/pdb2V1L/pdb

Classification: UNKNOWN FUNCTION
Organism(s): Vibrio cholerae O1
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2007-05-25 Released: 2007-07-24
Deposition Author(s): Sheikh, M.A., Potter, J.A., Johnson, K.A., Boyd, E.F., Taylor, G.L.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.13 Å
R-Value Free:
0.316 (Depositor), 0.304 (DCC)
R-Value Work:
0.235 (Depositor), 0.232 (DCC)
R-Value Observed:
0.239 (Depositor)

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This is version 1.3 of the entry. See complete history.

Literature

Crystal Structure of Vc1805, a Conserved Hypothetical Protein from a Vibrio Cholerae Pathogenicity Island, Reveals Homology to Human P32.

Sheikh, M.A., Potter, J.A., Johnson, K.A., Sim, R.B., Boyd, E.F., Taylor, G.L.

(2008) Proteins 71: 1563

PubMed: 18300248 Search on PubMed
DOI: https://doi.org/10.1002/prot.21993
Primary Citation Related Structures:
2V1L

Organizational Affiliation

Centre for Biomolecular Sciences, University of St Andrews, St Andrews, Fife, KY16 9ST, United Kingdom.

Macromolecule Content

Total Structure Weight: 16.85 kDa
Atom Count: 1,089
Modeled Residue Count: 129
Deposited Residue Count: 148
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
HYPOTHETICAL PROTEIN	A	148	Vibrio cholerae O1	Mutation(s): 0
UniProt
Find proteins for Q9KR41 (Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)) Explore Q9KR41 Go to UniProtKB: Q9KR41
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9KR41
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.13 Å
R-Value Free: 0.316 (Depositor), 0.304 (DCC)
R-Value Work: 0.235 (Depositor), 0.232 (DCC)
R-Value Observed: 0.239 (Depositor)

Space Group: P 3₁ 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 78.312	α = 90
b = 78.312	β = 90
c = 42.288	γ = 120

Software Package:

Software Name	Purpose
REFMAC	refinement
MOSFLM	data reduction
SCALA	data scaling
SOLVE/RESOLVE	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2007-07-24

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2007-07-24
Type: Initial release
Version 1.1: 2011-05-08
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2024-05-08
Changes: Data collection, Database references, Other

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.