☰ Navigation Tabs
Structure of the conserved hypothetical protein VC1805 from pathogenicity island VPI-2 of Vibrio cholerae O1 biovar eltor str. N16961 shares structural homology with the human P32 protein
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 pH 7.5
Crystal Properties Matthews coefficient Solvent content 2.46 44
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 78.312 α = 90 b = 78.312 β = 90 c = 42.288 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.13 39.16 99 0.06 23 8.8 8131 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.13 2.25 99 0.38 6.4 9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIRAS THROUGHOUT NONE 2.13 39.16 8131 409 99.3 0.239 0.235 0.2318 0.316 0.3042 RANDOM 39.21
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.25 -0.13 -0.25 0.38
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.612 r_dihedral_angle_3_deg 15.765 r_dihedral_angle_4_deg 15.619 r_dihedral_angle_1_deg 7.303 r_scangle_it 2.924 r_scbond_it 1.998 r_mcangle_it 1.987 r_angle_refined_deg 1.386 r_mcbond_it 1.135 r_symmetry_vdw_refined 0.354
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.612 r_dihedral_angle_3_deg 15.765 r_dihedral_angle_4_deg 15.619 r_dihedral_angle_1_deg 7.303 r_scangle_it 2.924 r_scbond_it 1.998 r_mcangle_it 1.987 r_angle_refined_deg 1.386 r_mcbond_it 1.135 r_symmetry_vdw_refined 0.354 r_nbtor_refined 0.311 r_nbd_refined 0.229 r_symmetry_hbond_refined 0.214 r_xyhbond_nbd_refined 0.178 r_chiral_restr 0.099 r_bond_refined_d 0.013 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1054 Nucleic Acid Atoms Solvent Atoms 35 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling SOLVE/RESOLVE phasing