2OO2 | pdb_00002oo2

Crystal structure of protein AF1782 from Archaeoglobus fulgidus, Pfam DUF357

• PDB DOI: https://doi.org/10.2210/pdb2OO2/pdb

• Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
• Organism(s): Archaeoglobus fulgidus DSM 4304
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2007-01-25 Released: 2007-02-06 
• Deposition Author(s): Bonanno, J.B., Rutter, M., Bain, K.T., Adams, J., Sridhar, V., Smyth, L., Freeman, J., Atwell, S., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.80 Å
• R-Value Free: 
  0.289 (Depositor), 0.291 (DCC) 
• R-Value Work: 
  0.240 (Depositor), 0.238 (DCC) 
• R-Value Observed: 
  0.242 (Depositor) 

Literature

Crystal structure of the hypothetical AF_1782 protein from Archaeoglobus fulgidus

Bonanno, J.B., Rutter, M., Bain, K.T., Adams, J., Sridhar, V., Smyth, L., Freeman, J., Atwell, S., Sauder, J.M., Burley, S.K., Almo, S.C.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA,PQS (software)

Macromolecule Content 

• Total Structure Weight: 10.38 kDa 
• Atom Count: 668 
• Modeled Residue Count: 76 
• Deposited Residue Count: 86 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Hypothetical protein AF_1782	A	86	Archaeoglobus fulgidus DSM 4304	Mutation(s): 0  Gene Names: AF_1782
UniProt
Find proteins for O28492 (Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)) Explore O28492  Go to UniProtKB:  O28492

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.80 Å
• R-Value Free:  0.289 (Depositor), 0.291 (DCC) 
• R-Value Work:  0.240 (Depositor), 0.238 (DCC) 
• R-Value Observed: 0.242 (Depositor) 

Space Group: P 2₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 44.631	α = 90
b = 46.452	β = 90
c = 43.177	γ = 90

Software Package:

Software Name	Purpose
SCALA	data scaling
REFMAC	refinement
PDB_EXTRACT	data extraction
CBASS	data collection
HKL-2000	data reduction
HKL-2000	data scaling
SHELXD	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2007-02-06 
Deposition Author(s): Bonanno, J.B., Rutter, M., Bain, K.T., Adams, J., Sridhar, V., Smyth, L., Freeman, J., Atwell, S., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

Revision History  

• Version 1.0: 2007-02-06
  Type: Initial release
  
• Version 1.1: 2008-05-01
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Derived calculations, Version format compliance
• Version 1.3: 2012-10-24
  Changes: Structure summary
• Version 1.4: 2018-11-14
  Changes: Data collection, Structure summary
• Version 1.5: 2021-02-03
  Changes: Database references, Structure summary
• Version 1.6: 2023-12-27
  Changes: Data collection, Database references