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Crystal structure of protein AF1782 from Archaeoglobus fulgidus, Pfam DUF357
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7.5 294 100mM Tris-HCl pH 7.5, 3.2M 1,6-hexanediol, 200mM Magnesium chloride, VAPOR DIFFUSION, temperature 294K
Crystal Properties Matthews coefficient Solvent content 2.16 42.97
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.631 α = 90 b = 46.452 β = 90 c = 43.177 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2007-01-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A 0.97958 NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.795 43.193 98.5 0.08 0.08 20.6 8.9 8822 8690 28
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.795 1.89 91.8 0.549 0.549 2.4 6.4 1147
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.8 20 8682 415 98.52 0.242 0.24 0.2382 0.289 0.2907 RANDOM 39.037
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.8 -3.21 5.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.743 r_dihedral_angle_3_deg 17.276 r_dihedral_angle_4_deg 15.836 r_scangle_it 5.875 r_dihedral_angle_1_deg 5.689 r_scbond_it 3.88 r_mcangle_it 2.266 r_angle_refined_deg 1.954 r_mcbond_it 1.621 r_nbtor_refined 0.295
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.743 r_dihedral_angle_3_deg 17.276 r_dihedral_angle_4_deg 15.836 r_scangle_it 5.875 r_dihedral_angle_1_deg 5.689 r_scbond_it 3.88 r_mcangle_it 2.266 r_angle_refined_deg 1.954 r_mcbond_it 1.621 r_nbtor_refined 0.295 r_symmetry_hbond_refined 0.282 r_nbd_refined 0.211 r_symmetry_vdw_refined 0.211 r_xyhbond_nbd_refined 0.141 r_chiral_restr 0.132 r_bond_refined_d 0.029 r_gen_planes_refined 0.011
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 645 Nucleic Acid Atoms Solvent Atoms 23 Heterogen Atoms
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction CBASS data collection HKL-2000 data reduction HKL-2000 data scaling SHELXD phasing