2LO7 | pdb_00002lo7

Ts16 NMR solution structure


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 200 
  • Conformers Submitted: 20 
  • Selection Criteria: 20 structures for lowest energy and no violations 

wwPDB Validation 3D Report Full Report

Validation slider image for 2LO7

This is version 1.3 of the entry. See complete history

Literature

New Tricks of an Old Pattern: STRUCTURAL VERSATILITY OF SCORPION TOXINS WITH COMMON CYSTEINE SPACING.

Saucedo, A.L.Flores-Solis, D.Rodriguez de la Vega, R.C.Ramirez-Cordero, B.Hernandez-Lopez, R.Cano-Sanchez, P.Navarro, R.N.Garcia-Valdes, J.Coronas-Valderrama, F.de Roodt, A.Brieba, L.G.Possani, L.D.Del Rio-Portilla, F.

(2012) J Biological Chem 287: 12321-12330

  • DOI: https://doi.org/10.1074/jbc.M111.329607
  • Primary Citation Related Structures: 
    2LI3, 2LO7

  • PubMed Abstract: 

    Scorpion venoms are a rich source of K(+) channel-blocking peptides. For the most part, they are structurally related small disulfide-rich proteins containing a conserved pattern of six cysteines that is assumed to dictate their common three-dimensional folding. In the conventional pattern, two disulfide bridges connect an α-helical segment to the C-terminal strand of a double- or triple-stranded β-sheet, conforming a cystine-stabilized α/β scaffold (CSα/β). Here we show that two K(+) channel-blocking peptides from Tityus scorpions conserve the cysteine spacing of common scorpion venom peptides but display an unconventional disulfide pattern, accompanied by a complete rearrangement of the secondary structure topology into a CS helix-loop-helix fold. Sequence and structural comparisons of the peptides adopting this novel fold suggest that it would be a new elaboration of the widespread CSα/β scaffold, thus revealing an unexpected structural versatility of these small disulfide-rich proteins. Acknowledgment of such versatility is important to understand how venom structural complexity emerged on a limited number of molecular scaffolds.


  • Organizational Affiliation
    • Instituto de Química, Universidad Nacional Autónoma de México, Ciudad Universitaria, México, D.F., 04510, México.

Macromolecule Content 

  • Total Structure Weight: 3.46 kDa 
  • Atom Count: 235 
  • Modeled Residue Count: 31 
  • Deposited Residue Count: 31 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Toxin Ts1631Tityus serrulatusMutation(s): 0 
UniProt
Find proteins for P86271 (Tityus serrulatus)
Explore P86271 
Go to UniProtKB:  P86271
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP86271
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 200 
  • Conformers Submitted: 20 
  • Selection Criteria: 20 structures for lowest energy and no violations 

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2012-03-14
    Type: Initial release
  • Version 1.1: 2012-05-09
    Changes: Database references
  • Version 1.2: 2014-01-15
    Changes: Other
  • Version 1.3: 2024-11-20
    Changes: Data collection, Database references, Structure summary