2JK6 | pdb_00002jk6

Structure of Trypanothione Reductase from Leishmania infantum


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.95 Å
  • R-Value Free: 
    0.264 (Depositor), 0.254 (DCC) 
  • R-Value Work: 
    0.235 (Depositor), 0.225 (DCC) 
  • R-Value Observed: 
    0.237 (Depositor) 

Starting Model: experimental
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This is version 1.4 of the entry. See complete history

Literature

Molecular Basis of Antimony Treatment in Leishmaniasis.

Baiocco, P.Colotti, G.Franceschini, S.Ilari, A.

(2009) J Med Chem 52: 2603

  • DOI: https://doi.org/10.1021/jm900185q
  • Primary Citation Related Structures: 
    2JK6, 2W0H

  • PubMed Abstract: 

    Leishmaniasis is a disease that affects 2 million people and kills 70000 persons every year. It is caused by Leishmania species, which are human protozoan parasites of the trypanosomatidae family. Trypanosomatidae differ from the other eukaryotes in their specific redox metabolism because the glutathione/glutathione reductase system is replaced by the unique trypanothione/trypanothione reductase system. The current treatment of leishmaniasis relies mainly on antimonial drugs. The crystal structures of oxidized trypanothione reductase (TR) from Leishmania infantum and of the complex of reduced TR with NADPH and Sb(III), reported in this paper, disclose for the first time the molecular mechanism of action of antimonial drugs against the parasite. Sb(III), which is coordinated by the two redox-active catalytic cysteine residues (Cys52 and Cys57), one threonine residue (Thr335), and His461' of the 2-fold symmetry related subunit in the dimer, strongly inhibits TR activity. Because TR is essential for the parasite survival and virulence and it is absent in mammalian cells, these findings provide insights toward the design of new more affordable and less toxic drugs against Leishmaniasis.


  • Organizational Affiliation
    • Istituto di Biologia e Patologia MolecolariCNR and Department of Biochemical Sciences, Sapienza University of Roma, P.le A. Moro 5, 00185 Roma, Italy.

Macromolecule Content 

  • Total Structure Weight: 112.57 kDa 
  • Atom Count: 7,555 
  • Modeled Residue Count: 978 
  • Deposited Residue Count: 1,022 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
TRYPANOTHIONE REDUCTASE
A, B
511Leishmania infantumMutation(s): 0 
EC: 1.8.1.12
UniProt
Find proteins for A4HSF7 (Leishmania infantum)
Explore A4HSF7 
Go to UniProtKB:  A4HSF7
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA4HSF7
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.95 Å
  • R-Value Free:  0.264 (Depositor), 0.254 (DCC) 
  • R-Value Work:  0.235 (Depositor), 0.225 (DCC) 
  • R-Value Observed: 0.237 (Depositor) 
Space Group: P 41
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 103.451α = 90
b = 103.451β = 90
c = 192.621γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling
MOLREPphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2009-04-28
    Type: Initial release
  • Version 1.1: 2011-05-07
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2023-12-13
    Changes: Data collection, Database references, Derived calculations, Other, Refinement description
  • Version 1.4: 2024-10-23
    Changes: Structure summary