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Structure of Trypanothione Reductase from Leishmania infantum
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1FEA PDB ENTRY 1FEA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 2.2 M AMMONIUM SULPHATE, 0.1 M TRIS PH 7.5
Crystal Properties Matthews coefficient Solvent content 4.67 74
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 103.451 α = 90 b = 103.451 β = 90 c = 192.621 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2008-04-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.2 BESSY 14.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.95 103 99 0.06 23 4.8 41850 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.95 3 84 0.3 3.8 3.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1FEA 2.95 103.69 39182 2057 97.3 0.237 0.235 0.2248 0.264 0.2537 RANDOM 54.78
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.94 3.94 -7.89
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.86 r_dihedral_angle_4_deg 17.867 r_dihedral_angle_3_deg 16.065 r_dihedral_angle_1_deg 4.698 r_angle_refined_deg 0.944 r_scangle_it 0.823 r_mcangle_it 0.619 r_scbond_it 0.465 r_mcbond_it 0.343 r_nbtor_refined 0.297
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.86 r_dihedral_angle_4_deg 17.867 r_dihedral_angle_3_deg 16.065 r_dihedral_angle_1_deg 4.698 r_angle_refined_deg 0.944 r_scangle_it 0.823 r_mcangle_it 0.619 r_scbond_it 0.465 r_mcbond_it 0.343 r_nbtor_refined 0.297 r_nbd_refined 0.175 r_symmetry_vdw_refined 0.15 r_xyhbond_nbd_refined 0.11 r_chiral_restr 0.065 r_symmetry_hbond_refined 0.038 r_bond_refined_d 0.006 r_gen_planes_refined 0.002 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7400 Nucleic Acid Atoms Solvent Atoms 24 Heterogen Atoms 131
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling MOLREP phasing