2BTO | pdb_00002bto

Structure of BtubA from Prosthecobacter dejongeii


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.50 Å
  • R-Value Free: 
    0.235 (Depositor), 0.233 (DCC) 
  • R-Value Work: 
    0.200 (Depositor), 0.198 (DCC) 
  • R-Value Observed: 
    0.202 (Depositor) 

wwPDB Validation 3D Report Full Report

Validation slider image for 2BTO

Ligand Structure Quality Assessment 


This is version 1.2 of the entry. See complete history

Literature

Structure of Bacterial Tubulin Btuba/B: Evidence for Horizontal Gene Transfer.

Schlieper, D.Oliva, M.A.Andreu, J.M.Lowe, J.

(2005) Proc Natl Acad Sci U S A 102: 9170

  • DOI: https://doi.org/10.1073/pnas.0502859102
  • Primary Citation Related Structures: 
    2BTO, 2BTQ

  • PubMed Abstract: 

    alphabeta-Tubulin heterodimers, from which the microtubules of the cytoskeleton are built, have a complex chaperone-dependent folding pathway. They are thought to be unique to eukaryotes, whereas the homologue FtsZ can be found in bacteria. The exceptions are BtubA and BtubB from Prosthecobacter, which have higher sequence homology to eukaryotic tubulin than to FtsZ. Here we show that some of their properties are different from tubulin, such as weak dimerization and chaperone-independent folding. However, their structure is strikingly similar to tubulin including surface loops, and BtubA/B form tubulin-like protofilaments. Presumably, BtubA/B were transferred from a eukaryotic cell by horizontal gene transfer because their high degree of similarity to eukaryotic genes is unique within the Prosthecobacter genome.


  • Organizational Affiliation
    • Laboratory of Molecular Biology, Medical Research Council, Hills Road, Cambridge CB2 2QH, United Kingdom.

Macromolecule Content 

  • Total Structure Weight: 115.33 kDa 
  • Atom Count: 7,451 
  • Modeled Residue Count: 939 
  • Deposited Residue Count: 1,054 
  • Unique protein chains: 2

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
TUBULIN BTUBA
A, B
473Prosthecobacter dejongeiiMutation(s): 0 
UniProt
Find proteins for Q8GCC5 (Prosthecobacter dejongeii)
Explore Q8GCC5 
Go to UniProtKB:  Q8GCC5
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8GCC5
Sequence Annotations
Expand
Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
THIOREDOXIN 1C [auth T]108Escherichia coliMutation(s): 0 
UniProt
Find proteins for P0AA25 (Escherichia coli (strain K12))
Explore P0AA25 
Go to UniProtKB:  P0AA25
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP0AA25
Sequence Annotations
Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.50 Å
  • R-Value Free:  0.235 (Depositor), 0.233 (DCC) 
  • R-Value Work:  0.200 (Depositor), 0.198 (DCC) 
  • R-Value Observed: 0.202 (Depositor) 
Space Group: P 3 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 180.539α = 90
b = 180.539β = 90
c = 84.229γ = 120
Software Package:
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling

Structure Validation

View Full Validation Report



Ligand Structure Quality Assessment 


Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2005-06-23
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Advisory, Version format compliance
  • Version 1.2: 2024-10-16
    Changes: Data collection, Database references, Other, Refinement description, Structure summary