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Structure of BtubA from Prosthecobacter dejongeii
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 1.6M NA K PHOSPHATE, PH 6.0
Crystal Properties Matthews coefficient Solvent content 3.8 67.37
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 180.539 α = 90 b = 180.539 β = 90 c = 84.229 γ = 120
Symmetry Space Group P 3 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2003-04-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 31.6 99.9 0.08 12.5 4.9 54524 3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.64 100 0.45 3 5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.5 50 52031 2732 99.9 0.202 0.2 0.1977 0.235 0.2328 RANDOM 54.62
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.23 1.12 2.23 -3.35
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.289 r_dihedral_angle_4_deg 21.221 r_dihedral_angle_3_deg 18.607 r_dihedral_angle_1_deg 5.675 r_scangle_it 1.472 r_angle_refined_deg 1.352 r_mcangle_it 0.972 r_scbond_it 0.945 r_mcbond_it 0.592 r_nbtor_refined 0.306
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.289 r_dihedral_angle_4_deg 21.221 r_dihedral_angle_3_deg 18.607 r_dihedral_angle_1_deg 5.675 r_scangle_it 1.472 r_angle_refined_deg 1.352 r_mcangle_it 0.972 r_scbond_it 0.945 r_mcbond_it 0.592 r_nbtor_refined 0.306 r_symmetry_vdw_refined 0.25 r_nbd_refined 0.207 r_xyhbond_nbd_refined 0.164 r_chiral_restr 0.093 r_symmetry_hbond_refined 0.079 r_bond_refined_d 0.014 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7171 Nucleic Acid Atoms Solvent Atoms 216 Heterogen Atoms 64
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling