28NT | pdb_000028nt

Cryo-EM structure of the 70S ribosome from Francisella tularensis


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.95 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

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This is version 1.0 of the entry. See complete history

Literature

Cryo-EM structure of the 70S ribosome from Francisella tularensis

Klima, M.Silhan, J.Boura, E.

To be published.

Macromolecule Content 

  • Total Structure Weight: 2,079.98 kDa 
  • Atom Count: 132,144 
  • Modeled Residue Count: 9,438 
  • Deposited Residue Count: 9,965 
  • Unique protein chains: 46
  • Unique nucleic acid chains: 3

Macromolecules


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Entity ID: 3
MoleculeChains  Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL2274Francisella tularensisMutation(s): 0 
UniProt
Find proteins for A7N9S9 (Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA))
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Entity ID: 4
MoleculeChains  Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL3210Francisella tularensisMutation(s): 0 
UniProt
Find proteins for Q14JC0 (Francisella tularensis subsp. tularensis (strain FSC 198))
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Entity ID: 5
MoleculeChains  Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL4207Francisella tularensisMutation(s): 0 
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Find proteins for Q14JB9 (Francisella tularensis subsp. tularensis (strain FSC 198))
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Entity ID: 6
MoleculeChains  Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL5179Francisella tularensisMutation(s): 0 
UniProt
Find proteins for A7N9T7 (Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA))
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Entity ID: 7
MoleculeChains  Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL6178Francisella tularensisMutation(s): 0 
UniProt
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Entity ID: 8
MoleculeChains  Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein bL9151Francisella tularensisMutation(s): 0 
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Find proteins for A7NC56 (Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA))
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Entity ID: 9
MoleculeChains  Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL13142Francisella tularensisMutation(s): 0 
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Entity ID: 10
MoleculeChains  Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL14122Francisella tularensisMutation(s): 0 
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Entity ID: 11
MoleculeChains  Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL15143Francisella tularensisMutation(s): 0 
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Entity ID: 12
MoleculeChains  Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL16137Francisella tularensisMutation(s): 0 
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Find proteins for A0A0B3VDL9 (Francisella tularensis subsp. holarctica)
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Entity ID: 13
MoleculeChains  Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein bL17145Francisella tularensisMutation(s): 0 
UniProt
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Entity ID: 14
MoleculeChains  Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL18117Francisella tularensisMutation(s): 0 
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Entity ID: 15
MoleculeChains  Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein bL19115Francisella tularensisMutation(s): 0 
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Entity ID: 16
MoleculeChains  Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein bL20118Francisella tularensisMutation(s): 0 
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Entity ID: 17
MoleculeChains  Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein bL21104Francisella tularensisMutation(s): 0 
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Entity ID: 18
MoleculeChains  Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL22111Francisella tularensisMutation(s): 0 
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Entity ID: 19
MoleculeChains  Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL2399Francisella tularensisMutation(s): 0 
UniProt
Find proteins for A7N9S8 (Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA))
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Entity ID: 20
MoleculeChains  Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL24105Francisella tularensisMutation(s): 0 
UniProt
Find proteins for A7N9T6 (Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA))
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Entity ID: 21
MoleculeChains  Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein bL2596Francisella tularensisMutation(s): 0 
UniProt
Find proteins for A7NBX3 (Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA))
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Entity ID: 22
MoleculeChains  Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein bL2784Francisella tularensisMutation(s): 0 
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Entity ID: 23
MoleculeChains  Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein bL2878Francisella tularensisMutation(s): 0 
UniProt
Find proteins for Q14G26 (Francisella tularensis subsp. tularensis (strain FSC 198))
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Entity ID: 24
MoleculeChains  Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL2966Francisella tularensisMutation(s): 0 
UniProt
Find proteins for Q2A5G2 (Francisella tularensis subsp. holarctica (strain LVS))
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Entity ID: 25
MoleculeChains  Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein uL3061Francisella tularensisMutation(s): 0 
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Find proteins for Q14JA2 (Francisella tularensis subsp. tularensis (strain FSC 198))
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Entity ID: 26
MoleculeChains  Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein bL3172Francisella tularensisMutation(s): 0 
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Find proteins for Q2A2S8 (Francisella tularensis subsp. holarctica (strain LVS))
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Entity ID: 27
MoleculeChains  Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein bL32AA [auth 0]60Francisella tularensisMutation(s): 0 
UniProt
Find proteins for A7NCH9 (Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA))
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Entity ID: 28
MoleculeChains  Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein bL33BA [auth 1]51Francisella tularensisMutation(s): 0 
UniProt
Find proteins for Q14G25 (Francisella tularensis subsp. tularensis (strain FSC 198))
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Entity ID: 29
MoleculeChains  Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein bL34CA [auth 2]44Francisella tularensisMutation(s): 0 
UniProt
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Entity ID: 30
MoleculeChains  Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein bL35DA [auth 3]65Francisella tularensisMutation(s): 0 
UniProt
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Entity ID: 31
MoleculeChains  Sequence LengthOrganismDetailsImage
Large ribosomal subunit protein bL36EA [auth 4]37Francisella tularensisMutation(s): 0 
UniProt
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Entity ID: 33
MoleculeChains  Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS2GA [auth b]222Francisella tularensisMutation(s): 0 
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Entity ID: 34
MoleculeChains  Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS4HA [auth d]205Francisella tularensisMutation(s): 0 
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Entity ID: 35
MoleculeChains  Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS5IA [auth e]166Francisella tularensisMutation(s): 0 
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Entity ID: 36
MoleculeChains  Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein bS6JA [auth f]111Francisella tularensisMutation(s): 0 
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Entity ID: 37
MoleculeChains  Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS7KA [auth g]157Francisella tularensisMutation(s): 0 
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Entity ID: 38
MoleculeChains  Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS8LA [auth h]132Francisella tularensisMutation(s): 0 
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Entity ID: 39
MoleculeChains  Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS9MA [auth i]129Francisella tularensisMutation(s): 0 
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Entity ID: 40
MoleculeChains  Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS11NA [auth k]129Francisella tularensisMutation(s): 0 
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Entity ID: 41
MoleculeChains  Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS12OA [auth l]124Francisella tularensisMutation(s): 0 
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Entity ID: 42
MoleculeChains  Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS13PA [auth m]118Francisella tularensisMutation(s): 0 
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Entity ID: 43
MoleculeChains  Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS15QA [auth o]88Francisella tularensisMutation(s): 0 
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Entity ID: 44
MoleculeChains  Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein bS16RA [auth p]82Francisella tularensisMutation(s): 0 
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Entity ID: 45
MoleculeChains  Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS17SA [auth q]83Francisella tularensisMutation(s): 0 
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Entity ID: 46
MoleculeChains  Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein bS18TA [auth r]72Francisella tularensisMutation(s): 0 
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Entity ID: 47
MoleculeChains  Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein uS19UA [auth s]92Francisella tularensisMutation(s): 0 
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Entity ID: 48
MoleculeChains  Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein bS20VA [auth t]90Francisella tularensisMutation(s): 0 
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Entity ID: 49
MoleculeChains  Sequence LengthOrganismDetailsImage
Small ribosomal subunit protein bS21BWA [auth u]65Francisella tularensisMutation(s): 0 
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Reference Sequence
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Entity ID: 1
MoleculeChains LengthOrganismImage
23S ribosomal RNA2,886Francisella tularensis
Sequence Annotations
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Reference Sequence
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Entity ID: 2
MoleculeChains LengthOrganismImage
5S ribosomal RNA115Francisella tularensis
Sequence Annotations
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Reference Sequence
Find similar nucleic acids by:  (by identity cutoff) 
Entity ID: 32
MoleculeChains LengthOrganismImage
16S ribosomal RNAFA [auth a]1,528Francisella tularensis
Sequence Annotations
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Reference Sequence

Small Molecules

Ligands 2 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
ZN

Query on ZN



Download:Ideal Coordinates CCD File
FG [auth 4]ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
MG

Query on MG



Download:Ideal Coordinates CCD File
AB [auth A]
AC [auth A]
AD [auth A]
AE [auth A]
AF [auth A]
AB [auth A],
AC [auth A],
AD [auth A],
AE [auth A],
AF [auth A],
AG [auth B],
BB [auth A],
BC [auth A],
BD [auth A],
BE [auth A],
BF [auth A],
BG [auth B],
CB [auth A],
CC [auth A],
CD [auth A],
CE [auth A],
CF [auth A],
CG [auth B],
DB [auth A],
DC [auth A],
DD [auth A],
DE [auth A],
DF [auth A],
DG [auth C],
EB [auth A],
EC [auth A],
ED [auth A],
EE [auth A],
EF [auth A],
EG [auth 0],
FB [auth A],
FC [auth A],
FD [auth A],
FE [auth A],
FF [auth A],
GB [auth A],
GC [auth A],
GD [auth A],
GE [auth A],
GF [auth A],
GG [auth a],
HB [auth A],
HC [auth A],
HD [auth A],
HE [auth A],
HF [auth A],
HG [auth a],
IB [auth A],
IC [auth A],
ID [auth A],
IE [auth A],
IF [auth A],
IG [auth a],
JB [auth A],
JC [auth A],
JD [auth A],
JE [auth A],
JF [auth A],
JG [auth a],
KB [auth A],
KC [auth A],
KD [auth A],
KE [auth A],
KF [auth A],
KG [auth a],
LB [auth A],
LC [auth A],
LD [auth A],
LE [auth A],
LF [auth A],
LG [auth a],
MB [auth A],
MC [auth A],
MD [auth A],
ME [auth A],
MF [auth A],
MG [auth a],
NB [auth A],
NC [auth A],
ND [auth A],
NE [auth A],
NF [auth A],
NG [auth a],
OB [auth A],
OC [auth A],
OD [auth A],
OE [auth A],
OF [auth A],
OG [auth a],
PB [auth A],
PC [auth A],
PD [auth A],
PE [auth A],
PF [auth A],
PG [auth a],
QB [auth A],
QC [auth A],
QD [auth A],
QE [auth A],
QF [auth A],
QG [auth a],
RB [auth A],
RC [auth A],
RD [auth A],
RE [auth A],
RF [auth A],
RG [auth a],
SB [auth A],
SC [auth A],
SD [auth A],
SE [auth A],
SF [auth A],
SG [auth a],
TB [auth A],
TC [auth A],
TD [auth A],
TE [auth A],
TF [auth A],
TG [auth a],
UB [auth A],
UC [auth A],
UD [auth A],
UE [auth A],
UF [auth A],
UG [auth a],
VB [auth A],
VC [auth A],
VD [auth A],
VE [auth A],
VF [auth A],
WB [auth A],
WC [auth A],
WD [auth A],
WE [auth A],
WF [auth A],
XA [auth A],
XB [auth A],
XC [auth A],
XD [auth A],
XE [auth A],
XF [auth A],
YA [auth A],
YB [auth A],
YC [auth A],
YD [auth A],
YE [auth A],
YF [auth A],
ZA [auth A],
ZB [auth A],
ZC [auth A],
ZD [auth A],
ZE [auth A],
ZF [auth A]
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.95 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONcryoSPARCv4.6.2

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Not funded--

Revision History  (Full details and data files)

  • Version 1.0: 2026-05-06
    Type: Initial release