21AL | pdb_000021al

Tetrameric complex of the Borna disease virus 1 nucleoprotein (mutant Arg341Ala)


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.57 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.1 of the entry. See complete history

Literature

Structure and assembly of Borna disease virus 1 nucleoprotein-RNA complexes.

Sugita, Y.Hirai, Y.Goto, S.H.Fujiwara, T.Tomonaga, K.Noda, T.Horie, M.

(2026) Sci Adv 12: eaeb0835-eaeb0835

  • DOI: https://doi.org/10.1126/sciadv.aeb0835
  • Primary Citation Related Structures: 
    21AL

  • PubMed Abstract: 

    Structures of nucleoprotein (N)-RNA complexes of the Bornaviridae , a virus family in the order Mononegavirales , have not been reported. Here, using cryo-electron microscopy (cryo-EM), we report high-resolution structures of Borna disease virus 1 (BoDV-1) N-RNA complex assemblies, including a dominant hexameric ring-like complex and less populated heptameric and octameric forms, the first RNA-bound N structures reported from this family. These structures reveal key features of N-RNA engagement and a BoDV-1-specific stoichiometry of eight nucleotides per N, providing a framework for comparison with related negative-strand RNA viruses. In addition to these RNA-bound complexes, we identified multiple RNA-free oligomers, indicating substantial conformational flexibility of N. Mutational analyses identified residues essential for nucleocapsid formation and RNA synthesis. Cryo-EM of mutant complexes captured RNA-free assemblies, suggesting that initial N oligomerization precedes RNA binding. These findings clarify the structural organization of the N-RNA complex and suggest how oligomeric plasticity contributes to nucleocapsid assembly.


  • Organizational Affiliation
    • Hakubi Center for Advanced Research, Kyoto University, Kyoto, Japan.

Macromolecule Content 

  • Total Structure Weight: 43.49 kDa 
  • Atom Count: 2,591 
  • Modeled Residue Count: 334 
  • Deposited Residue Count: 393 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Nucleoprotein393Borna disease virus 1Mutation(s): 1 
UniProt
Find proteins for P0C796 (Borna disease virus 1)
Explore P0C796 
Go to UniProtKB:  P0C796
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP0C796
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.57 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONcryoSPARC
MODEL REFINEMENTServalcat

Structure Validation

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Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Japan Science and TechnologyJapan21460759
Ministry of Education, Culture, Sports, Science and Technology (Japan)Japan24K02284

Revision History  (Full details and data files)

  • Version 1.0: 2026-03-11
    Type: Initial release
  • Version 1.1: 2026-04-29
    Changes: Data collection, Database references