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Tetrameric complex of the Borna disease virus 1 nucleoprotein (mutant Arg341Ala)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 9JZJ
Refinement RMS Deviations Key Refinement Restraint Deviation r_long_range_B_refined 72.022 r_long_range_B_other 72.021 r_scangle_other 48.632 r_mcangle_it 39.836 r_mcangle_other 39.83 r_scbond_it 29.25 r_scbond_other 29.239 r_mcbond_it 25.036 r_mcbond_other 25.026 r_dihedral_angle_3_deg 11.807
RMS Deviations Key Refinement Restraint Deviation r_long_range_B_refined 72.022 r_long_range_B_other 72.021 r_scangle_other 48.632 r_mcangle_it 39.836 r_mcangle_other 39.83 r_scbond_it 29.25 r_scbond_other 29.239 r_mcbond_it 25.036 r_mcbond_other 25.026 r_dihedral_angle_3_deg 11.807 r_dihedral_angle_1_deg 7.488 r_dihedral_angle_2_deg 4.567 r_angle_refined_deg 1.804 r_angle_other_deg 0.753 r_chiral_restr 0.098 r_bond_refined_d 0.008 r_gen_planes_refined 0.007 r_gen_planes_other 0.004 r_bond_other_d r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Sample Purified Borna disease virus 1 nucleoprotein (mutant Arg341Ala)
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 47159 Reported Resolution (Å) 3.57 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C4
Map-Model Fitting and Refinement Id 1 (9JZJ) Refinement Space RECIPROCAL Refinement Protocol AB INITIO MODEL Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type FEI FALCON IV (4k x 4k) Electron Dose (electrons/Å**2) 50
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model TFS GLACIOS Minimum Defocus (nm) 800 Maximum Defocus (nm) 1800 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 200 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION cryoSPARC IMAGE ACQUISITION EPU CTF CORRECTION cryoSPARC MODEL FITTING UCSF ChimeraX MODEL FITTING Coot INITIAL EULER ASSIGNMENT cryoSPARC FINAL EULER ASSIGNMENT cryoSPARC CLASSIFICATION cryoSPARC RECONSTRUCTION cryoSPARC MODEL REFINEMENT Servalcat
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION