1ZSO | pdb_00001zso

Hypothetical protein from plasmodium falciparum

• PDB DOI: https://doi.org/10.2210/pdb1ZSO/pdb

• Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
• Organism(s): Plasmodium falciparum
• Expression System: Escherichia coli
• Mutation(s): Yes 


• Deposited: 2005-05-24 Released: 2005-06-07 
• Deposition Author(s): Holmes, M.A., Merritt, E.A., Structural Genomics of Pathogenic Protozoa Consortium (SGPP)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.17 Å
• R-Value Free: 
  0.233 (Depositor), 0.218 (DCC) 
• R-Value Work: 
  0.183 (Depositor) 
• R-Value Observed: 
  0.186 (Depositor) 

Literature

Structure of the conserved hypothetical protein MAL13P1.257 from Plasmodium falciparum.

Holmes, M.A., Buckner, F.S., Van Voorhis, W.C., Mehlin, C., Boni, E., Earnest, T.N., DeTitta, G., Luft, J., Lauricella, A., Anderson, L., Kalyuzhniy, O., Zucker, F., Schoenfeld, L.W., Hol, W.G., Merritt, E.A.

(2006) Acta Crystallogr Sect F Struct Biol Cryst Commun 62: 180-185

• PubMed: 16511296 
• DOI: https://doi.org/10.1107/S1744309106005847
• Primary Citation Related Structures: 
  1ZSO


• PubMed Abstract: 
  

  The structure of a conserved hypothetical protein, PlasmoDB sequence MAL13P1.257 from Plasmodium falciparum, Pfam sequence family PF05907, has been determined as part of the structural genomics effort of the Structural Genomics of Pathogenic Protozoa consortium. The structure was determined by multiple-wavelength anomalous dispersion at 2.17 A resolution. The structure is almost entirely beta-sheet; it consists of 15 beta-strands and one short 3(10)-helix and represents a new protein fold. The packing of the two monomers in the asymmetric unit indicates that the biological unit may be a dimer.

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Organizational Affiliation: 
• Structural Genomics of Pathogenic Protozoa Consortium, USA.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 39.86 kDa 
• Atom Count: 2,809 
• Modeled Residue Count: 315 
• Deposited Residue Count: 328 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
hypothetical protein	A, B	164	Plasmodium falciparum	Mutation(s): 3  Gene Names: MAL13P1.257
UniProt
Find proteins for Q8IDI8 (Plasmodium falciparum (isolate 3D7)) Explore Q8IDI8  Go to UniProtKB:  Q8IDI8

Small Molecules

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE	A, B	L-PEPTIDE LINKING	C5 H11 N O2 Se		MET

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.17 Å
• R-Value Free:  0.233 (Depositor), 0.218 (DCC) 
• R-Value Work:  0.183 (Depositor) 
• R-Value Observed: 0.186 (Depositor) 

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 62.247	α = 90
b = 71.104	β = 90
c = 78.616	γ = 90

Software Package:

Software Name	Purpose
SOLVE	phasing
PDB_EXTRACT	data extraction
RESOLVE	phasing
DENZO	data reduction
SCALEPACK	data scaling
REFMAC	refinement

Structure Validation

Entry History 

Deposition Data

• Released Date: 2005-06-07 
Deposition Author(s): Holmes, M.A., Merritt, E.A., Structural Genomics of Pathogenic Protozoa Consortium (SGPP)

Revision History  

• Version 1.0: 2005-06-07
  Type: Initial release
  
• Version 1.1: 2008-04-30
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Advisory, Version format compliance
• Version 1.3: 2012-10-24
  Changes: Database references
• Version 1.4: 2017-10-11
  Changes: Refinement description
• Version 1.5: 2024-10-30
  Changes: Data collection, Database references, Derived calculations, Structure summary