X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP82980.4 ul protein 12.4 mg/ml, 0.4 ul crystallization buffer, 1.0M LiCl, 25% PEG 6000, 0.025M Mg nitrate, 0.1M Tris, pH 8.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
2.1843.64

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 62.247α = 90
b = 71.104β = 90
c = 78.616γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 3152004-10-13MMAD
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 8.2.20.9795, 0.9797, 0.9537ALS8.2.2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.155092.818151
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.152.230.3651.636

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUT2.17201715092694.440.185850.183250.23262RANDOM30.798
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
4.02-1.42-2.61
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.014
r_dihedral_angle_4_deg22.588
r_dihedral_angle_3_deg16.849
r_dihedral_angle_1_deg7.343
r_scangle_it4.874
r_scbond_it3.249
r_mcangle_it2.163
r_angle_refined_deg1.584
r_mcbond_it1.576
r_angle_other_deg0.757
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.014
r_dihedral_angle_4_deg22.588
r_dihedral_angle_3_deg16.849
r_dihedral_angle_1_deg7.343
r_scangle_it4.874
r_scbond_it3.249
r_mcangle_it2.163
r_angle_refined_deg1.584
r_mcbond_it1.576
r_angle_other_deg0.757
r_mcbond_other0.336
r_symmetry_hbond_refined0.307
r_nbd_other0.211
r_nbd_refined0.202
r_symmetry_vdw_other0.198
r_nbtor_refined0.196
r_xyhbond_nbd_refined0.193
r_symmetry_vdw_refined0.15
r_chiral_restr0.101
r_nbtor_other0.095
r_bond_refined_d0.017
r_gen_planes_refined0.006
r_bond_other_d0.001
r_gen_planes_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2647
Nucleic Acid Atoms
Solvent Atoms162
Heterogen Atoms

Software

Software
Software NamePurpose
SOLVEphasing
PDB_EXTRACTdata extraction
RESOLVEphasing
DENZOdata reduction
SCALEPACKdata scaling
REFMACrefinement