1T98 | pdb_00001t98

Crystal Structure of MukF(1-287)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.90 Å
  • R-Value Free: 
    0.273 (Depositor), 0.239 (DCC) 
  • R-Value Work: 
    0.233 (Depositor), 0.202 (DCC) 
  • R-Value Observed: 
    0.235 (Depositor) 

wwPDB Validation 3D Report Full Report

Validation slider image for 1T98

This is version 1.5 of the entry. See complete history

Literature

The MukF subunit of Escherichia coli condensin: architecture and functional relationship to kleisins.

Fennell-Fezzie, R.Gradia, S.D.Akey, D.Berger, J.M.

(2005) EMBO J 24: 1921-1930

  • DOI: https://doi.org/10.1038/sj.emboj.7600680
  • Primary Citation Related Structures: 
    1T98

  • PubMed Abstract: 

    The Escherichia coli MukB, MukE, and MukF proteins form a bacterial condensin (MukBEF) that contributes to chromosome management by compacting DNA. MukB is an ATPase and DNA-binding protein of the SMC superfamily; however, the structure and function of non-SMC components, such as MukF, have been less forthcoming. Here, we report the crystal structure of the N-terminal 287 amino acids of MukF at 2.9 A resolution. This region folds into a winged-helix domain and an extended coiled-coil domain that self-associate to form a stable, doubly domain-swapped dimer. Protein dissection and affinity purification data demonstrate that the region of MukF C-terminal to this fragment binds to MukE and MukB. Our findings, together with sequence analyses, indicate that MukF is a kleisin subunit for E. coli condensin and suggest a means by which it may organize the MukBEF assembly.


  • Organizational Affiliation
    • Department of Molecular and Cell Biology, University of California, Berkeley, CA 94720, USA.

Macromolecule Content 

  • Total Structure Weight: 66.07 kDa 
  • Atom Count: 4,228 
  • Modeled Residue Count: 526 
  • Deposited Residue Count: 574 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Chromosome partition protein mukF
A, B
287Escherichia coliMutation(s): 5 
Gene Names: MUKFKICBB0922
UniProt
Find proteins for P60293 (Escherichia coli (strain K12))
Explore P60293 
Go to UniProtKB:  P60293
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP60293
Sequence Annotations
Expand
Reference Sequence

Small Molecules

Modified Residues  1 Unique
IDChains TypeFormula2D DiagramParent
MSE
Query on MSE
A, B
L-PEPTIDE LINKINGC5 H11 N O2 SeMET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.90 Å
  • R-Value Free:  0.273 (Depositor), 0.239 (DCC) 
  • R-Value Work:  0.233 (Depositor), 0.202 (DCC) 
  • R-Value Observed: 0.235 (Depositor) 
Space Group: P 61
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 58.699α = 90
b = 58.699β = 90
c = 307.414γ = 120
Software Package:
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling
SHARPphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2005-05-24
    Type: Initial release
  • Version 1.1: 2008-04-30
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Advisory, Version format compliance
  • Version 1.3: 2016-11-30
    Changes: Other
  • Version 1.4: 2017-10-11
    Changes: Refinement description
  • Version 1.5: 2024-11-20
    Changes: Data collection, Database references, Derived calculations, Refinement description, Structure summary