1SYR | pdb_00001syr

Initial Structural Analysis of Plasmodium falciparum thioredoxin

PDB DOI: https://doi.org/10.2210/pdb1SYR/pdb

Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Organism(s): Plasmodium falciparum 3D7
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2004-04-01 Released: 2004-04-13
Deposition Author(s): Robien, M.A., Hol, W.G.J., Structural Genomics of Pathogenic Protozoa Consortium (SGPP)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.95 Å
R-Value Free:
0.236 (Depositor), 0.225 (DCC)
R-Value Work:
0.197 (Depositor), 0.191 (DCC)
R-Value Observed:
0.199 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 1SYR

This is version 1.4 of the entry. See complete history.

Literature

Initial Structural Analysis of Plasmodium falciparum thioredoxin

Robien, M.A., Hol, W.G.J., Structural Genomics of Pathogenic Protozoa Consortium

To be published.

Macromolecule Content

Total Structure Weight: 153.1 kDa
Atom Count: 9,662
Modeled Residue Count: 1,222
Deposited Residue Count: 1,344
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
thioredoxin	A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	112	Plasmodium falciparum 3D7	Mutation(s): 0 Gene Names: PF14_0545
UniProt
Find proteins for Q7KQL8 (Plasmodium falciparum (isolate 3D7)) Explore Q7KQL8 Go to UniProtKB: Q7KQL8
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q7KQL8
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.95 Å
R-Value Free: 0.236 (Depositor), 0.225 (DCC)
R-Value Work: 0.197 (Depositor), 0.191 (DCC)
R-Value Observed: 0.199 (Depositor)

Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 108.189	α = 90
b = 201.308	β = 90
c = 200.504	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
MOSFLM	data reduction
CCP4	data scaling
SHARP	phasing

Structure Validation

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View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2004-04-13

Deposition Author(s):

Structural Genomics of Pathogenic Protozoa Consortium (SGPP)

Revision History (Full details and data files)

Version 1.0: 2004-04-13
Type: Initial release
Version 1.1: 2008-04-30
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Advisory, Source and taxonomy, Version format compliance
Version 1.3: 2018-01-31
Changes: Database references
Version 1.4: 2024-10-16
Changes: Data collection, Database references, Refinement description, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.