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Initial Structural Analysis of Plasmodium falciparum thioredoxin
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4 293 Ammonium sulfate, sodium citrate, pH 4, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.5 65
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 108.189 α = 90 b = 201.308 β = 90 c = 200.504 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2003-11-11 M SINGLE WAVELENGTH 2 1 x-ray M MAD 1,2 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.2 1.0781 ALS 5.0.2 2 SYNCHROTRON ALS BEAMLINE 5.0.2 0.9795, 0.9638, 0.9797 ALS 5.0.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 2.95 70 99.5 0.115 18.1 13.6 46212 46209 -3 89.787
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.95 30 43723 43723 2330 99.34 0.1988 0.1988 0.19677 0.1909 0.23616 0.2254 RANDOM 42.271
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.52 0.52
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 5.247 r_dihedral_angle_1_deg 5.175 r_scbond_it 3.205 r_mcangle_it 2.46 r_mcbond_it 1.26 r_angle_refined_deg 1.132 r_symmetry_vdw_refined 0.227 r_nbd_refined 0.212 r_symmetry_hbond_refined 0.119 r_xyhbond_nbd_refined 0.093
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 5.247 r_dihedral_angle_1_deg 5.175 r_scbond_it 3.205 r_mcangle_it 2.46 r_mcbond_it 1.26 r_angle_refined_deg 1.132 r_symmetry_vdw_refined 0.227 r_nbd_refined 0.212 r_symmetry_hbond_refined 0.119 r_xyhbond_nbd_refined 0.093 r_chiral_restr 0.089 r_bond_refined_d 0.009 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9662 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling SHARP phasing