11HD | pdb_000011hd

Deposited: 2026-02-23 Released: 2026-08-26
Deposition Author(s): Pittman, C., Xu, C., Catchpole, R., Garrett, S., Fuchs, R., Makarova, K., Koonin, E., Zhao, P., Wells, L., Graveley, B., Chu, X., Ke, A., Terns, M.
Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)

Experimental Data Snapshot

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Macromolecule Content

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Cas7c	A [auth B] C [auth E] D [auth G] M [auth C] N [auth F] A [auth B], C [auth E], D [auth G], M [auth C], N [auth F], O [auth H], P [auth I]	330	Pyrococcus abyssi	Mutation(s): 0
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
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Reference Sequence

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| 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Cas5c	B [auth D]	306	Pyrococcus abyssi	Mutation(s): 0
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
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Reference Sequence

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| 3D Structure

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
Cas11c	E [auth K] F [auth L] G [auth M] H [auth N] I [auth O] E [auth K], F [auth L], G [auth M], H [auth N], I [auth O], Q [auth J]	124	Pyrococcus abyssi	Mutation(s): 0
Entity Groups
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Reference Sequence

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| 3D Structure

Entity ID: 6
Molecule	Chains	Sequence Length	Organism	Details	Image
Cas10IVc	L [auth A]	608	Pyrococcus abyssi	Mutation(s): 0
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Reference Sequence

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Molecule	Chains	Length	Organism
Entity ID: 4
Target Strand DNA	J [auth P]	37	Pyrococcus abyssi
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Reference Sequence

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Molecule	Chains	Length	Organism
Entity ID: 5
crRNA (47-MER)	K [auth Q]	47	Pyrococcus abyssi
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Reference Sequence

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ZN Query on ZN Download:Ideal Coordinates CCD File SDF format, chain R [auth A] MOL2 format, chain R [auth A] mmCIF format, chain R [auth A]	R [auth A]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N		Interactions Focus chain R [auth A] Interactions & Density Focus chain R [auth A]
MG (Subject of Investigation/LOI) Query on MG Download:Ideal Coordinates CCD File SDF format, chain T [auth A] SDF format, chain S [auth A] MOL2 format, chain T [auth A] MOL2 format, chain S [auth A] mmCIF format, chain T [auth A] mmCIF format, chain S [auth A]	S [auth A], T [auth A]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N		Interactions Focus chain S [auth A] Focus chain T [auth A] Interactions & Density Focus chain S [auth A] Focus chain T [auth A]