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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Space Group = "P 2 3"

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Search Summary

This query matches 107 Structures.

Refinements

Structure Determination Methodology

experimental (107)

Scientific Name of Source Organism

	Homo sapiens (18)
	Pseudo-nitzschia multiseries (11)
	Bacillus sp. KSM-K38 (7)
	Satellite tobacco mosaic virus (6)
	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 (5)
	Mus musculus (5)
	Penaeus japonicus (3)
	Pyrococcus horikoshii (3)
	Deinococcus radiodurans (2)
	Escherichia coli (2)

More...

Taxonomy

	Bacteria (49)
	Eukaryota (40)
	Riboviria (8)
	Archaea (7)
	Varidnaviria (3)
	other sequences (2)

Experimental Method

X-RAY DIFFRACTION (107)

Polymer Entity Type

	Protein (106)
	RNA (6)
	DNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (32)
	2.0 - 2.5 (39)
	2.5 - 3.0 (18)
	3.0 - 3.5 (10)
	3.5 - 4.0 (4)
	4.0 - 4.5 (2)

Release Date

	1995 - 1999 (2)
	2000 - 2004 (10)
	2005 - 2009 (16)
	2010 - 2014 (25)
	2015 - 2019 (25)
	2020 - 2024 (28)
	2025 - 2029 (1)

Enzyme Classification Name

	Oxidoreductases (34)
	Transferases (16)
	Hydrolases (12)
	Lyases (6)

Membrane Protein Annotation

OPM (1)

Symmetry Type

	Asymmetric (37)
	Cyclic (28)
	Octahedral (19)
	Dihedral (14)
	Tetrahedral (14)
	Icosahedral (6)

SCOP Classification

	All alpha proteins (25)
	Alpha and beta proteins (a/b) (16)
	Alpha and beta proteins (a+b) (11)
	All beta proteins (12)
	Artifacts (5)

AllSelected

1 to 25 of 107 Structures

Page 1 of 5

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1A8S \| pdb_00001a8s	Download File View File

CHLOROPEROXIDASE F/PROPIONATE COMPLEX

Hofmann, B., Toelzer, S., Pelletier, I., Altenbuchner, J., Van Pee, K.-H., Hecht, H.-J.

(1998) J Mol Biology 279: 889-900

Released	1998-06-17
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Pseudomonas fluorescens
Macromolecule	CHLOROPEROXIDASE F (protein)
Unique Ligands	PPI, SO4

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1AVV \| pdb_00001avv	Download File View File

HIV-1 NEF PROTEIN, UNLIGANDED CORE DOMAIN

Arold, S., Franken, P., Dumas, C.

(1997) Structure 5: 1361-1372

Released	1998-03-25
Method	X-RAY DIFFRACTION 3 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	NEGATIVE FACTOR (protein)

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1J5Y \| pdb_00001j5y	Download File View File

Crystal structure of transcriptional regulator (TM1602) from Thermotoga maritima at 2.3 A resolution

Joint Center for Structural Genomics (JCSG)

(2007) Proteins 67: 247-252

Released	2002-07-31
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Thermotoga maritima
Macromolecule	TRANSCRIPTIONAL REGULATOR, BIOTIN REPRESSOR FAMILY (protein)
Unique Ligands	K, NI

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1NOG \| pdb_00001nog	Download File View File

Crystal Structure of Conserved Protein 0546 from Thermoplasma Acidophilum

Saridakis, V., Sanishvili, R., Iakounine, A., Xu, X., Pennycooke, M., Gu, J., Joachimiak, A., Arrowsmith, C.H., Edwards, A.M., Christendat, D., Midwest Center for Structural Genomics (MCSG)

(2004) J Biological Chem 279: 23646-23653

Released	2003-07-29
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Thermoplasma acidophilum
Macromolecule	conserved hypothetical protein TA0546 (protein)

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1RLG \| pdb_00001rlg	Download File View File

Molecular basis of Box C/D RNA-protein interaction: co-crystal structure of the Archaeal sRNP intiation complex

Moore, T., Zhang, Y., Fenley, M.O., Li, H.

(2004) Structure 12: 807-818

Released	2004-06-01
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Archaeoglobus fulgidus
Macromolecule	50S ribosomal protein L7Ae (protein) 25-MER (nucleic acid)

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1UD2 \| pdb_00001ud2	Download File View File

Crystal structure of calcium-free alpha-amylase from Bacillus sp. strain KSM-K38 (AmyK38)

Nonaka, T., Fujihashi, M., Kita, A., Hagihara, H., Ozaki, K., Ito, S., Miki, K.

(2003) J Biological Chem 278: 24818-24824

Released	2003-07-22
Method	X-RAY DIFFRACTION 2.13 Å
Organisms	Bacillus sp. KSM-K38
Macromolecule	amylase (protein)
Unique Ligands	GOL, NA

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1UD3 \| pdb_00001ud3	Download File View File

Crystal structure of AmyK38 N289H mutant

Nonaka, T., Fujihashi, M., Kita, A., Hagihara, H., Ozaki, K., Ito, S., Miki, K.

(2003) J Biological Chem 278: 24818-24824

Released	2003-07-22
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Bacillus sp. KSM-K38
Macromolecule	amylase (protein)
Unique Ligands	NA

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1UD4 \| pdb_00001ud4	Download File View File

Crystal structure of calcium free alpha amylase from Bacillus sp. strain KSM-K38 (AmyK38, in calcium containing solution)

Nonaka, T., Fujihashi, M., Kita, A., Hagihara, H., Ozaki, K., Ito, S., Miki, K.

(2003) J Biological Chem 278: 24818-24824

Released	2003-07-22
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Bacillus sp. KSM-K38
Macromolecule	amylase (protein)
Unique Ligands	NA

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1UD5 \| pdb_00001ud5	Download File View File

Crystal structure of AmyK38 with rubidium ion

Nonaka, T., Fujihashi, M., Kita, A., Hagihara, H., Ozaki, K., Ito, S., Miki, K.

(2003) J Biological Chem 278: 24818-24824

Released	2003-07-22
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Bacillus sp. KSM-K38
Macromolecule	amylase (protein)
Unique Ligands	NA, RB

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1UD6 \| pdb_00001ud6	Download File View File

Crystal structure of AmyK38 with potassium ion

Nonaka, T., Fujihashi, M., Kita, A., Hagihara, H., Ozaki, K., Ito, S., Miki, K.

(2003) J Biological Chem 278: 24818-24824

Released	2003-07-22
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Bacillus sp. KSM-K38
Macromolecule	amylase (protein)
Unique Ligands	K

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1UD8 \| pdb_00001ud8	Download File View File

Crystal structure of AmyK38 with lithium ion

Nonaka, T., Fujihashi, M., Kita, A., Hagihara, H., Ozaki, K., Ito, S., Miki, K.

(2003) J Biological Chem 278: 24818-24824

Released	2003-07-22
Method	X-RAY DIFFRACTION 2.88 Å
Organisms	Bacillus sp. KSM-K38
Macromolecule	amylase (protein)
Unique Ligands	NA

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1WPB \| pdb_00001wpb	Download File View File

Structure of Escherichia coli yfbU gene product

Borek, D., Chen, Y., Zheng, M., Skarina, T., Savchenko, A., Edwards, A., Otwinowski, Z., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2004-12-07
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli
Macromolecule	hypothetical protein yfbU (protein)
Unique Ligands	CL, GOL

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1Y0R \| pdb_00001y0r	Download File View File

Crystal structure of the tetrahedral aminopeptidase from P. horikoshii

Groll, M., Borissenko, L.

(2005) J Mol Biology 346: 1207-1219

Released	2005-03-01
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Pyrococcus horikoshii
Macromolecule	Frv operon protein FrvX (protein)
Unique Ligands	ARS, ZN

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1Y0Y \| pdb_00001y0y	Download File View File

Crystal structure of tetrahedral aminopeptidase from P. horikoshii in complex with amastatin

Groll, M., Borissenko, L.

(2005) J Mol Biology 346: 1207-1219

Released	2005-03-01
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Pyrococcus horikoshii
Macromolecule	AMASTATIN (protein) Frv operon protein FrvX (protein)
Unique Ligands	ZN

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2AEX \| pdb_00002aex	Download File View File

The 1.58A Crystal Structure of Human Coproporphyrinogen Oxidase Reveals the Structural Basis of Hereditary Coproporphyria

Lee, D.S., Flachsova, E., Bodnarova, M., Demeler, B., Martasek, P., Raman, C.S.

(2005) Proc Natl Acad Sci U S A 102: 14232-14237

Released	2005-08-02
Method	X-RAY DIFFRACTION 1.58 Å
Organisms	Homo sapiens
Macromolecule	Coproporphyrinogen III oxidase, mitochondrial (protein)
Unique Ligands	CIT

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2C2F \| pdb_00002c2f	Download File View File

Dps from Deinococcus radiodurans

Romao, C.V., Mitchell, E., McSweeney, S.

(2006) J Biol Inorg Chem 11: 891

Released	2006-07-26
Method	X-RAY DIFFRACTION 1.61 Å
Organisms	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539
Macromolecule	DNA-BINDING STRESS RESPONSE PROTEIN (protein)
Unique Ligands	FE, GOL, SO4, ZN

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2C2J \| pdb_00002c2j	Download File View File

Crystal Structure Of The Dps92 From Deinococcus Radiodurans

Cuypers, M.G., Romao, C.V., Mitchell, E., McSweeney, S.

(2007) J Mol Biology 371: 787

Released	2007-02-20
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539
Macromolecule	DNA-BINDING STRESS RESPONSE PROTEIN (protein)
Unique Ligands	FE, MG

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2C2U \| pdb_00002c2u	Download File View File

Dps from Deinococcus radiodurans

Romao, C.V., Mitchell, E., McSweeney, S.

(2006) J Biol Inorg Chem 11: 891

Released	2006-07-26
Method	X-RAY DIFFRACTION 1.1 Å
Organisms	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539
Macromolecule	DNA-BINDING STRESS RESPONSE PROTEIN (protein)
Unique Ligands	FE, SO4, ZN

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2C6R \| pdb_00002c6r	Download File View File

FE-SOAKED CRYSTAL STRUCTURE OF THE DPS92 FROM DEINOCOCCUS RADIODURANS

Cuypers, M.G., Romao, C.V., Mitchell, E., Mcsweeney, S.

(2007) J Mol Biology 371: 787

Released	2007-02-20
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539
Macromolecule	DNA-BINDING STRESS RESPONSE PROTEIN, DPS FAMILY (protein)
Unique Ligands	CL, FE

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2F7N \| pdb_00002f7n	Download File View File

Structure of D. radiodurans Dps-1

Lee, Y.H., Kim, S.G., Bhattacharyya, G., Grove, A.

(2006) J Mol Biology 361: 105-114

Released	2006-11-14
Method	X-RAY DIFFRACTION 2 Å
Organisms	Deinococcus radiodurans
Macromolecule	DNA-binding stress response protein, Dps family (protein)
Unique Ligands	CO, SO4

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2GNC \| pdb_00002gnc	Download File View File

Crystal structure of srGAP1 SH3 domain in the slit-robo signaling pathway

Li, X., Liu, Y., Gao, F., Bartlam, M., Wu, J.Y., Rao, Z.

(2006) J Biological Chem 281: 28430-28437

Released	2006-07-18
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Mus musculus
Macromolecule	SLIT-ROBO Rho GTPase-activating protein 1 (protein)

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2GSH \| pdb_00002gsh	Download File View File

Crystal structure of L-rhamnonate dehydratase from Salmonella typhimurium

Patskovsky, Y., Malashkevich, V.N., Sauder, J.M., Dickey, M., Adams, J.M., Wasserman, S.R., Gerlt, J., Almo, S.C., Burley, S.K., New York SGX Research Center for Structural Genomics (NYSGXRC)

To be published

Released	2006-05-09
Method	X-RAY DIFFRACTION 2.393 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Macromolecule	L-RHAMNONATE DEHYDRATASE (protein)
Unique Ligands	GOL, MG

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2QSD \| pdb_00002qsd	Download File View File

Crystal structure of a protein Il1583 from Idiomarina loihiensis

Patskovsky, Y., Bonanno, J., Sauder, J.M., Romero, R., Rutter, M., Koss, J., Mckenzie, C., Gheyi, T., Bain, K., Wasserman, S.R., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

To be published

Released	2007-08-14
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Idiomarina loihiensis
Macromolecule	Uncharacterized conserved protein (protein)
Unique Ligands	GOL