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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: PubMed ID = 25961323

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Search Summary

This query matches 21 Structures.

Refinements

Structure Determination Methodology

experimental (21)

Scientific Name of Source Organism

	Escherichia coli (4)
	Mycobacterium tuberculosis str. Erdman = ATCC 35801 (3)
	Bacillus anthracis (2)
	Candida albicans (2)
	Pseudomonas aeruginosa PAO1 (2)
	Pyricularia oryzae 70-15 (2)
	Salmonella enterica subsp. enterica serovar Typhimurium (2)
	Aspergillus nidulans (1)
	Burkholderia pseudomallei 1655 (1)
	Fusarium graminearum PH-1 (1)

More...

Taxonomy

	Bacteria (14)
	Eukaryota (7)

Experimental Method

	X-RAY DIFFRACTION (20)
	ELECTRON MICROSCOPY (1)

Polymer Entity Type

Protein (21)

Refinement Resolution (Å)

	1.5 - 2.0 (8)
	2.0 - 2.5 (7)
	2.5 - 3.0 (6)

Release Date

	2000 - 2004 (5)
	2005 - 2009 (3)
	2010 - 2014 (2)
	2015 - 2019 (6)
	2020 - 2024 (5)

Enzyme Classification Name

Lyases (21)

Symmetry Type

	Dihedral (20)
	Cyclic (3)

SCOP Classification

	Alpha and beta proteins (a/b) (20)
	Artifacts (2)

AllSelected

1 to 21 of 21 Structures

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1DQU \| pdb_00001dqu	Download File View File

CRYSTAL STRUCTURE OF THE ISOCITRATE LYASE FROM ASPERGILLUS NIDULANS

Britton, K.L., Langridge, S.J., Baker, P.J., Weeradechapon, K., Sedelnikova, S.E., De Lucas, J.R., Rice, D.W., Turner, G.

(2000) Structure 8: 349-362

Released	2000-05-10
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Aspergillus nidulans
Macromolecule	ISOCITRATE LYASE (protein)

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1MUM \| pdb_00001mum	Download File View File

Structure of the 2-Methylisocitrate Lyase (PrpB) from Escherichia coli

Grimm, C., Reuter, K.

(2003) J Mol Biology 328: 609-621

Released	2003-04-29
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Escherichia coli
Macromolecule	2-methylisocitrate lyase (protein)
Unique Ligands	MG

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1O5Q \| pdb_00001o5q	Download File View File

Crystal Structure of Pyruvate and Mg2+ bound 2-methylisocitrate lyase (PrpB) from Salmonella typhimurium

Simanshu, D.K., Murthy, M.R.N.

(2003) Biochem Biophys Res Commun 311: 193-201

Released	2003-11-25
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	Probable methylisocitrate lyase (protein)
Unique Ligands	MG, PYR

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1OQF \| pdb_00001oqf	Download File View File

Crystal structure of the 2-methylisocitrate lyase

Liu, S., Lu, Z., Dunaway-Mariano, D., Herzberg, O., Structure 2 Function Project (S2F)

(2005) Biochemistry 44: 2949-2962

Released	2004-04-27
Method	X-RAY DIFFRACTION 1.93 Å
Organisms	Escherichia coli
Macromolecule	2-methylisocitrate lyase (protein)

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1UJQ \| pdb_00001ujq	Download File View File

Crystal structure of 2-methylisocitrate lyase (PrpB) from Salmonella enterica serovar typhimurium

Simanshu, D.K., Murthy, M.R.N.

(2003) Biochem Biophys Res Commun 311: 193-201

Released	2003-09-02
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	Probable methylisocitrate lyase (protein)

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1XG3 \| pdb_00001xg3	Download File View File

Crystal structure of the C123S 2-methylisocitrate lyase mutant from Escherichia coli in complex with the reaction product, Mg(II)-pyruvate and succinate

Liu, S., Lu, Z., Han, Y., Melamud, E., Dunaway-Mariano, D., Herzberg, O.

(2005) Biochemistry 44: 2949-2962

Released	2005-03-01
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Escherichia coli
Macromolecule	Probable methylisocitrate lyase (protein)
Unique Ligands	MG, PYR, SIN

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1XG4 \| pdb_00001xg4	Download File View File

Crystal Structure of the C123S 2-Methylisocitrate Lyase Mutant from Escherichia coli in complex with the inhibitor isocitrate

Liu, S., Lu, Z., Han, Y., Melamud, E., Dunaway-Mariano, D., Herzberg, O.

(2005) Biochemistry 44: 2949-2962

Released	2005-03-01
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Escherichia coli
Macromolecule	Probable methylisocitrate lyase (protein)
Unique Ligands	ICT, MG

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3EOO \| pdb_00003eoo	Download File View File

2.9A crystal structure of methyl-isocitrate lyase from Burkholderia pseudomallei

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

To be published

Released	2008-10-21
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Burkholderia pseudomallei 1655
Macromolecule	Methylisocitrate lyase (protein)

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4IQD \| pdb_00004iqd	Download File View File

Crystal Structure of Carboxyvinyl-Carboxyphosphonate Phosphorylmutase from Bacillus anthracis

Kim, Y., Maltseva, N., Kwon, K., Anderson, W.F., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)

To be published

Released	2013-01-23
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bacillus anthracis
Macromolecule	Carboxyvinyl-carboxyphosphonate phosphorylmutase (protein)
Unique Ligands	PYR

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4IQE \| pdb_00004iqe	Download File View File

Crystal Structure of Carboxyvinyl-Carboxyphosphonate Phosphorylmutase from Bacillus anthracis str. Ames Ancestor

Kim, Y., Maltseva, N., Kwon, K., Anderson, W.F., Joachimiak, A., CSGID, Center for Structural Genomics of Infectious Diseases (CSGID)

To be published

Released	2013-01-23
Method	X-RAY DIFFRACTION 2.501 Å
Organisms	Bacillus anthracis
Macromolecule	Carboxyvinyl-carboxyphosphonate phosphorylmutase (protein)

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5DQL \| pdb_00005dql	Download File View File

Crystal Structure of 2-vinyl glyoxylate modified isocitrate lyase from Mycobacterium tuberculosis

Huang, H.-L., Meek, T.D.

(2017) Proc Natl Acad Sci U S A 114: 7617-7622

Released	2016-09-14
Method	X-RAY DIFFRACTION 1.782 Å
Organisms	Mycobacterium tuberculosis str. Erdman = ATCC 35801
Macromolecule	Isocitrate lyase 1 (protein)
Unique Ligands	MG, VGX

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5E9F \| pdb_00005e9f	Download File View File

Structural insights of isocitrate lyases from Magnaporthe oryzae

Park, Y., Cho, Y., Lee, Y.-H., Lee, Y.-W., Rhee, S.

(2016) J Struct Biol 194: 395-403

Released	2016-04-27
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Pyricularia oryzae 70-15
Macromolecule	Isocitrate lyase (protein)
Unique Ligands	MG

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5E9G \| pdb_00005e9g	Download File View File

Structural insights of isocitrate lyases from Magnaporthe oryzae

Park, Y., Cho, Y., Lee, Y.-H., Lee, Y.-W., Rhee, S.

(2016) J Struct Biol 194: 395-403

Released	2016-04-27
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Pyricularia oryzae 70-15
Macromolecule	Isocitrate lyase (protein)
Unique Ligands	GLV, GOL, MG

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5E9H \| pdb_00005e9h	Download File View File

Structural insights of isocitrate lyases from Fusarium graminearum

Park, Y., Cho, Y., Lee, Y.-H., Lee, Y.-W., Rhee, S.

(2016) J Struct Biol 194: 395-403

Released	2016-04-27
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Fusarium graminearum PH-1
Macromolecule	Isocitrate lyase (protein)
Unique Ligands	MLI, MN

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6C4A \| pdb_00006c4a	Download File View File

Crystal structure of 3-nitropropionate modified isocitrate lyase from Mycobacterium tuberculosis with pyruvate

Kreitler, D.F., Ray, S., Murkin, A.S., Gulick, A.M.

(2018) ACS Chem Biol 13: 1470-1473

Released	2018-06-06
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Mycobacterium tuberculosis str. Erdman = ATCC 35801
Macromolecule	Isocitrate lyase 1 (protein)
Unique Ligands	3NP, EPE, MG, PEG, PYR

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6C4C \| pdb_00006c4c	Download File View File

Crystal structure of 3-nitropropionate modified isocitrate lyase from Mycobacterium tuberculosis with glyoxylate and pyruvate

Kreitler, D.F., Ray, S., Murkin, A.S., Gulick, A.M.

(2018) ACS Chem Biol 13: 1470-1473

Released	2018-06-06
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Mycobacterium tuberculosis str. Erdman = ATCC 35801
Macromolecule	Isocitrate lyase 1 (protein)
Unique Ligands	3NP, GLV, MG, PYR

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6T4V \| pdb_00006t4v	Download File View File

Crystal structure of 2-methylisocitrate lyase (PrpB) from Pseudomonas aeruginosa in apo form.

Wijaya, A.J., Brear, P., Dolan, S.K., Welch, M.

To be published

Released	2020-09-30
Method	X-RAY DIFFRACTION 1.807 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	2-methylisocitrate lyase (protein)
Unique Ligands	PYR

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6T5M \| pdb_00006t5m	Download File View File

Crystal structure of 2-methylisocitrate lyase (PrpB) from Pseudomonas aeruginosa in complex with Mg(II)-pyruvate.

Wijaya, A.J., Brear, P., Dolan, S.K., Welch, M.

To be published

Released	2020-09-30
Method	X-RAY DIFFRACTION 1.76 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	2-methylisocitrate lyase (protein)
Unique Ligands	MG, PYR