4IQE | pdb_00004iqe

Crystal Structure of Carboxyvinyl-Carboxyphosphonate Phosphorylmutase from Bacillus anthracis str. Ames Ancestor

PDB DOI: https://doi.org/10.2210/pdb4IQE/pdb
Entry: 4IQE supersedes: 3KZ2

Classification: LYASE
Organism(s): Bacillus anthracis
Expression System: Escherichia coli BL21
Mutation(s): No

Deposited: 2013-01-11 Released: 2013-01-23
Deposition Author(s): Kim, Y., Maltseva, N., Kwon, K., Anderson, W.F., Joachimiak, A., CSGID, Center for Structural Genomics of Infectious Diseases (CSGID)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free:
0.178 (Depositor), 0.173 (DCC)
R-Value Work:
0.159 (Depositor), 0.156 (DCC)
R-Value Observed:
0.163 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.5 of the entry. See complete history.

Literature

Crystal Structure of Carboxyvinyl-Carboxyphosphonate Phosphorylmutase from Bacillus anthracis str. Ames Ancestor

Kim, Y., Maltseva, N., Kwon, K., Anderson, W.F., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)

To be published.

Macromolecule Content

Total Structure Weight: 67.3 kDa
Atom Count: 4,576
Modeled Residue Count: 577
Deposited Residue Count: 610
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Carboxyvinyl-carboxyphosphonate phosphorylmutase	A, B	305	Bacillus anthracis	Mutation(s): 0 Gene Names: prpB, yqiQ EC: 4.1.3.30
UniProt
Find proteins for A0A6L7HJ56 (Bacillus anthracis) Explore A0A6L7HJ56 Go to UniProtKB: A0A6L7HJ56
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A6L7HJ56
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A, B	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free: 0.178 (Depositor), 0.173 (DCC)
R-Value Work: 0.159 (Depositor), 0.156 (DCC)
R-Value Observed: 0.163 (Depositor)

Diffraction Data:

Space Group: P 3₂ 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 106.166	α = 90
b = 106.166	β = 90
c = 113.449	γ = 120

Software Package:

Software Name	Purpose
SBC-Collect	data collection
HKL-3000	data collection
HKL-3000	phasing
MOLREP	phasing
PHENIX	refinement
HKL-3000	data reduction
HKL-3000	data scaling

Structure Validation

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Entry History

Deposition Data

Released Date: 2013-01-23

Deposition Author(s):

Center for Structural Genomics of Infectious Diseases (CSGID)

This entry supersedes: 3KZ2

Revision History (Full details and data files)

Version 1.0: 2013-01-23
Type: Initial release
Version 1.1: 2014-12-03
Changes: Structure summary
Version 1.2: 2018-01-24
Changes: Advisory, Structure summary
Version 1.3: 2023-09-20
Changes: Advisory, Data collection, Database references, Derived calculations, Refinement description
Version 1.4: 2023-12-06
Changes: Data collection
Version 1.5: 2024-11-20
Changes: Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.