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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Enzyme Classification Number = 5.1.1.8

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Search Summary

This query matches 94 Structures.

Refinements

Structure Determination Methodology

experimental (94)

Scientific Name of Source Organism

	Homo sapiens (30)
	Vibrio cholerae (8)
	Mycobacterium tuberculosis CDC1551 (4)
	Brucella abortus 2308 (3)
	Mycolicibacterium smegmatis MC2 155 (3)
	Pseudomonas aeruginosa (3)
	Burkholderia pseudomallei 1710b (2)
	Enterobacter cloacae (2)
	Hepatitis B virus subtype adyw (2)
	Mycobacteroides abscessus ATCC 19977 (2)

More...

Taxonomy

	Bacteria (51)
	Eukaryota (37)
	Riboviria (3)
	Duplodnaviria (2)
	unclassified sequences (2)

Experimental Method

X-RAY DIFFRACTION (94)

Polymer Entity Type

Protein (94)

Refinement Resolution (Å)

	1.0 - 1.5 (3)
	1.5 - 2.0 (37)
	2.0 - 2.5 (29)
	2.5 - 3.0 (23)
	3.0 - 3.5 (2)

Release Date

	2000 - 2004 (6)
	2005 - 2009 (10)
	2010 - 2014 (32)
	2015 - 2019 (23)
	2020 - 2024 (22)
	2025 - 2029 (1)

Enzyme Classification Name

	Transferases (28)
	Hydrolases (16)
	Oxidoreductases (10)
	Ligases (4)
	Isomerases (3)
	Lyases (2)
	Translocases (1)

Symmetry Type

	Asymmetric (58)
	Cyclic (30)
	Dihedral (16)

SCOP Classification

	Alpha and beta proteins (a/b) (24)
	All beta proteins (11)
	Alpha and beta proteins (a+b) (20)
	Artifacts (13)
	All alpha proteins (2)
	Multi-domain proteins (alpha and beta) (4)
	Membrane and cell surface proteins and peptides (1)

AllSelected

1 to 25 of 94 Structures

Page 1 of 4

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1GKP \| pdb_00001gkp	Download File View File

D-Hydantoinase (Dihydropyrimidinase) from Thermus sp. in space group C2221

Abendroth, J., Niefind, K., Schomburg, D.

(2002) J Mol Biology 320: 143

Released	2002-06-27
Method	X-RAY DIFFRACTION 1.295 Å
Organisms	Thermus sp.
Macromolecule	HYDANTOINASE (protein)
Unique Ligands	EPE, SO4, ZN

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1GKQ \| pdb_00001gkq	Download File View File

D-Hydantoinase (Dihydropyrimidinase) from Thermus sp. in space group P212121

Abendroth, J., Niefind, K., Schomburg, D.

(2002) J Mol Biology 320: 143

Released	2002-06-27
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Thermus sp.
Macromolecule	HYDANTOINASE (protein)
Unique Ligands	ZN

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1GKR \| pdb_00001gkr	Download File View File

L-Hydantoinase (Dihydropyrimidinase) from Arthrobacter aurescens

Abendroth, J., Niefind, K., Schomburg, D.

(2002) Biochemistry 41: 8589-8597

Released	2002-07-25
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Paenarthrobacter aurescens
Macromolecule	NON-ATP DEPENDENT L-SELECTIVE HYDANTOINASE (protein)
Unique Ligands	ZN

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1K1D \| pdb_00001k1d	Download File View File

Crystal structure of D-hydantoinase

Cheon, Y.H., Kim, H.S., Han, K.H., Abendroth, J., Niefind, K., Schomburg, D., Wang, J., Kim, Y.

(2002) Biochemistry 41: 9410-9417

Released	2002-08-14
Method	X-RAY DIFFRACTION 3.01 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	D-hydantoinase (protein)
Unique Ligands	ZN

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1UV7 \| pdb_00001uv7	Download File View File

periplasmic domain of EpsM from Vibrio cholerae

Abendroth, J., Hol, W.G.J.

(2004) J Mol Biology 338: 585

Released	2004-04-23
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Vibrio cholerae
Macromolecule	GENERAL SECRETION PATHWAY PROTEIN M (protein)

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1W97 \| pdb_00001w97	Download File View File

cyto-EpsL: the cytoplasmic domain of EpsL, an inner membrane component of the type II secretion system of Vibrio cholerae

Abendroth, J., Bagdasarian, M., Sansdkvist, M., Hol, W.G.J.

(2004) J Mol Biology 344: 619

Released	2004-11-30
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Vibrio cholerae
Macromolecule	TYPE II SECRETION SYSTEM PROTEIN L (protein)

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1YF5 \| pdb_00001yf5	Download File View File

Cyto-Epsl: The Cytoplasmic Domain Of Epsl, An Inner Membrane Component Of The Type II Secretion System Of Vibrio Cholerae

Abendroth, J., Murphy, P., Mushtaq, A., Sandkvist, M., Bagdasarian, M., Hol, W.G.

(2005) J Mol Biology 348: 845-855

Released	2005-05-03
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Vibrio cholerae
Macromolecule	General secretion pathway protein L (protein)

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2BH1 \| pdb_00002bh1	Download File View File

X-ray structure of the general secretion pathway complex of the N- terminal domain of EpsE and the cytosolic domain of EpsL of Vibrio cholerae

Abendroth, J., Murphy, P.M., Mushtaq, A., Bagdasarian, M., Sandkvist, M., Hol, W.G.J.

(2005) J Mol Biology 348: 845

Released	2005-05-13
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Vibrio cholerae
Macromolecule	GENERAL SECRETION PATHWAY PROTEIN E, (protein) GENERAL SECRETION PATHWAY PROTEIN L (protein)
Unique Ligands	CA

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2QV8 \| pdb_00002qv8	Download File View File

Structure of the minor pseudopilin EpsH from the Type 2 Secretion System of Vibrio cholerae

Yanez, M.E., Korotkov, K.V., Abendroth, J., Hol, W.G.J.

(2008) J Mol Biology 377: 91-103

Released	2008-02-26
Method	X-RAY DIFFRACTION 2 Å
Organisms	Vibrio cholerae
Macromolecule	General secretion pathway protein H (protein)

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2RET \| pdb_00002ret	Download File View File

The crystal structure of a binary complex of two pseudopilins: EpsI and EpsJ from the Type 2 Secretion System of Vibrio vulnificus

Yanez, M.E., Korotkov, K.V., Abendroth, J., Hol, W.G.J.

(2008) J Mol Biology 375: 471-486

Released	2008-02-05
Method	X-RAY DIFFRACTION 2.21 Å
Organisms	Vibrio vulnificus
Macromolecule	EpsJ (protein) Pseudopilin EpsI (protein)
Unique Ligands	CL, NA

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2VMA \| pdb_00002vma	Download File View File

The three-dimensional structure of the cytoplasmic domains of EpsF from the Type 2 Secretion System of Vibrio cholerae

Abendroth, J., Korotkov, K.V., Mitchell, D.D., Kreger, A., Hol, W.G.J.

(2009) J Struct Biol 166: 303

Released	2009-02-10
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Vibrio cholerae
Macromolecule	GENERAL SECRETION PATHWAY PROTEIN F (protein)
Unique Ligands	CA, IOD

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2VMB \| pdb_00002vmb	Download File View File

The three-dimensional structure of the cytoplasmic domains of EpsF from the Type 2 Secretion System of Vibrio cholerae

Abendroth, J., Korotkov, K.V., Mitchell, D.D., Kreger, A., Hol, W.G.J.

(2009) J Struct Biol 166: 303

Released	2009-02-10
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Vibrio cholerae
Macromolecule	GENERAL SECRETION PATHWAY PROTEIN F (protein)
Unique Ligands	CA

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2W7V \| pdb_00002w7v	Download File View File

periplasmic domain of EpsL from Vibrio parahaemolyticus

Abendroth, J., Kreger, A.C., Abendroth, H., Sandkvist, M., Hol, W.G.J.

(2009) J Struct Biol 168: 313

Released	2010-03-31
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Vibrio parahaemolyticus
Macromolecule	GENERAL SECRETION PATHWAY PROTEIN L (protein)
Unique Ligands	EDO, PO4

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3C1Q \| pdb_00003c1q	Download File View File

The three-dimensional structure of the cytoplasmic domains of EpsF from the Type 2 Secretion System of Vibrio cholerae

Abendroth, J., Mitchell, D.D., Korotkov, K.V., Kreeger, A., Hol, W.G.J.

(2009) J Struct Biol 166: 303-315

Released	2009-02-03
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Vibrio cholerae
Macromolecule	General secretion pathway protein F (protein)
Unique Ligands	CA, CL, NA, PE5

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3GMT \| pdb_00003gmt	Download File View File

Crystal structure of adenylate kinase from burkholderia pseudomallei

Abendroth, J., Staker, B.L., Robinson, H., Buchko, G.W., Hewitt, S.N., Napuli, A.J., Van Voorhis, W., Stacy, R., Myler, P.J., Stewart, L., Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2010) Biochem Biophys Res Commun 394: 1012-1017

Released	2009-06-02
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Burkholderia pseudomallei 1710b
Macromolecule	Adenylate kinase (protein)
Unique Ligands	SO4

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3IFT \| pdb_00003ift	Download File View File

Crystal structure of glycine cleavage system protein H from Mycobacterium tuberculosis, using X-rays from the Compact Light Source.

Edwards, T.E., Abendroth, J., Staker, B., Mayer, C., Phan, I., Kelley, A., Analau, E., Leibly, D., Rifkin, J., Loewen, R., Ruth, R.D., Stewart, L.J., Accelerated Technologies Center for Gene to 3D Structure (ATCG3D)

(2010) J Struct Funct Genomics 11: 91-100

Released	2009-08-11
Method	X-RAY DIFFRACTION 2 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Glycine cleavage system H protein (protein)

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3K2E \| pdb_00003k2e	Download File View File

Crystal structure of enoyl-(acyl-carrier-protein) reductase from Anaplasma phagocytophilum at 1.9A resolution

Abendroth, J., Staker, B., Seattle Structural Genomics Center for Infectious Disease (SSGCID)

To be published

Released	2009-10-13
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Anaplasma phagocytophilum
Macromolecule	Enoyl-(Acyl-carrier-protein) reductase (protein)
Unique Ligands	EDO, GOL

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3LRF \| pdb_00003lrf	Download File View File

Crystal structure of beta-ketoacyl synthase from brucella melitensis

Abendroth, J., Edwards, T., Staker, B., Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2020) Proteins 88: 47-56

Released	2010-03-31
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Brucella abortus 2308
Macromolecule	Beta-ketoacyl synthase (protein)
Unique Ligands	NA

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3NNU \| pdb_00003nnu	Download File View File

Crystal structure of P38 alpha in complex with DP1376

Abendroth, J.

(2010) Bioorg Med Chem Lett 20: 5793-5798

Released	2010-09-15
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Mitogen-activated protein kinase 14 (protein)
Unique Ligands	EDB

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3NNV \| pdb_00003nnv	Download File View File

Crystal structure of P38 alpha in complex with DP437

Abendroth, J.

(2010) Bioorg Med Chem Lett 20: 5793-5798

Released	2010-09-15
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Mitogen-activated protein kinase 14 (protein)
Unique Ligands	437

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3NNW \| pdb_00003nnw	Download File View File

Crystal structure of P38 alpha in complex with DP802

Abendroth, J.

(2010) Bioorg Med Chem Lett 20: 5793-5798

Released	2010-09-15
Method	X-RAY DIFFRACTION 1.89 Å
Organisms	Homo sapiens
Macromolecule	Mitogen-activated protein kinase 14 (protein)
Unique Ligands	EDD

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3NNX \| pdb_00003nnx	Download File View File

Crystal structure of phosphorylated P38 alpha in complex with DP802

Abendroth, J.

(2010) Bioorg Med Chem Lett 20: 5793-5798

Released	2010-09-15
Method	X-RAY DIFFRACTION 2.28 Å
Organisms	Homo sapiens
Macromolecule	Mitogen-activated protein kinase 14 (protein)
Unique Ligands	EDD

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3RJM \| pdb_00003rjm	Download File View File

CASPASE2 IN COMPLEX WITH CHDI LIGAND 33c

Abendroth, J., Lorimer, D., Stewart, L., Maillard, M., Kiselyov, A.S.

(2011) Bioorg Med Chem 19: 5833-5851

Released	2011-09-21
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Homo sapiens
Macromolecule	Caspase-2 (protein) Peptide inhibitor (ACE)VDV(3PX)D-CHO (protein)

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3SDS \| pdb_00003sds	Download File View File

Crystal structure of a mitochondrial ornithine carbamoyltransferase from Coccidioides immitis

Edwards, T.E., Abendroth, J., Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2011) Acta Crystallogr Sect F Struct Biol Cryst Commun 67: 1006-1009

Released	2011-06-22
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Coccidioides immitis RS
Macromolecule	Ornithine carbamoyltransferase, mitochondrial (protein)
Unique Ligands	CL