RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Enzyme Classification Number = 2.7.4.16

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 14 Structures.

Refinements

Structure Determination Methodology

experimental (14)

Scientific Name of Source Organism

	Aquifex aeolicus (5)
	Acinetobacter baumannii (3)
	Pseudomonas aeruginosa (2)
	Acinetobacter baumannii 6013150 (1)
	Methylobacillus flagellatus KT (1)
	Stenotrophomonas maltophilia K279a (1)
	Thermus thermophilus HB8 (1)

Taxonomy

Bacteria (14)

Experimental Method

X-RAY DIFFRACTION (14)

Polymer Entity Type

Protein (14)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (8)
	2.0 - 2.5 (3)
	2.5 - 3.0 (2)

Release Date

	2005 - 2009 (6)
	2010 - 2014 (1)
	2015 - 2019 (4)
	2020 - 2024 (2)
	2025 - 2029 (1)

Enzyme Classification Name

Transferases (14)

Symmetry Type

Cyclic (14)

SCOP Classification

	Alpha and beta proteins (a+b) (11)
	Artifacts (5)

AllSelected

1 to 14 of 14 Structures

Page 1 of 1

Sort by

Explore in 3D

1VQV \| pdb_00001vqv	Download File View File

Crystal Structure of Thiamine Monophosphate Kinase (thil) from Aquifex Aeolicus

Eswaramoorthy, S., Swaminathan, S., Burley, S.K., New York SGX Research Center for Structural Genomics (NYSGXRC)

To be published

Released	2005-01-11
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Aquifex aeolicus
Macromolecule	thiamine monophosphate kinase (protein)
Unique Ligands	PO4

Explore in 3D

2YXZ \| pdb_00002yxz	Download File View File

Crystal structure of tt0281 from Thermus thermophilus HB8

Goto, M.

To be published

Released	2008-04-29
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Thiamin-monophosphate kinase (protein)

Explore in 3D

3C9R \| pdb_00003c9r	Download File View File

AaThiL complexed with ATP

McCulloch, K.M., Kinsland, C., Begley, T.P., Ealick, S.E.

(2008) Biochemistry 47: 3810-3821

Released	2008-03-18
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Aquifex aeolicus
Macromolecule	Thiamine monophosphate kinase (protein)
Unique Ligands	ATP, MG

Explore in 3D

3C9S \| pdb_00003c9s	Download File View File

AaThiL complexed with AMPPCP

McCulloch, K.M., Kinsland, C., Begley, T.P., Ealick, S.E.

(2008) Biochemistry 47: 3810-3821

Released	2008-03-18
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Aquifex aeolicus
Macromolecule	Thiamine monophosphate kinase (protein)
Unique Ligands	ACP, MG

Explore in 3D

3C9T \| pdb_00003c9t	Download File View File

AaThiL complexed with AMPPCP and TMP

McCulloch, K.M., Kinsland, C., Begley, T.P., Ealick, S.E.

(2008) Biochemistry 47: 3810-3821

Released	2008-03-18
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Aquifex aeolicus
Macromolecule	Thiamine monophosphate kinase (protein)
Unique Ligands	ACP, MG, TPS

Explore in 3D

3C9U \| pdb_00003c9u	Download File View File

AaThiL complexed with ADP and TPP

McCulloch, K.M., Kinsland, C., Begley, T.P., Ealick, S.E.

(2008) Biochemistry 47: 3810-3821

Released	2008-03-18
Method	X-RAY DIFFRACTION 1.48 Å
Organisms	Aquifex aeolicus
Macromolecule	Thiamine monophosphate kinase (protein)
Unique Ligands	ADP, MG, TPP

Explore in 3D

3MCQ \| pdb_00003mcq	Download File View File

Crystal structure of Thiamine-monophosphate kinase (Mfla_0573) from METHYLOBACILLUS FLAGELLATUS KT at 1.91 A resolution

Joint Center for Structural Genomics (JCSG)

To be published

Released	2010-05-19
Method	X-RAY DIFFRACTION 1.91 Å
Organisms	Methylobacillus flagellatus KT
Macromolecule	Thiamine-monophosphate kinase (protein)
Unique Ligands	1PE, NA, PEG, PG4, PGE

Explore in 3D

5CC8 \| pdb_00005cc8	Download File View File

Structure of thiamine-monophosphate kinase from Acinetobacter baumannii in complex with AMPPNP

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2019) Sci Rep 9: 4392-4392

Released	2015-09-02
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Acinetobacter baumannii 6013150
Macromolecule	Thiamine-monophosphate kinase (protein)
Unique Ligands	ANP, CL, K, MG

Explore in 3D

5CM7 \| pdb_00005cm7	Download File View File

Structure of thiamine-monophosphate kinase from Acinetobacter baumannii in complex with adenosine diphosphate (ADP) and thiamine diphosphate (TPP)

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2019) Sci Rep 9: 4392-4392

Released	2015-08-26
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Acinetobacter baumannii
Macromolecule	Thiamine-monophosphate kinase (protein)
Unique Ligands	ADP, CA, MG, NA, TPP

Explore in 3D

5DD7 \| pdb_00005dd7	Download File View File

Structure of thiamine-monophosphate kinase from Acinetobacter baumannii in complex with AMPPNP and thiamine-monophosphate

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2019) Sci Rep 9: 4392-4392

Released	2015-09-16
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Acinetobacter baumannii
Macromolecule	Thiamine-monophosphate kinase (protein)
Unique Ligands	ANP, EDO, K, MG, TPS

Explore in 3D

6MFM \| pdb_00006mfm	Download File View File

Structure of thiamine-monophosphate kinase from Acinetobacter baumannii in complex with adenosine diphosphate (ADP) and thiamine diphosphate (TPP), orthorhombic crystal form

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2019) Sci Rep 9: 4392-4392

Released	2018-09-26
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Acinetobacter baumannii
Macromolecule	Thiamine-monophosphate kinase (protein)
Unique Ligands	ADP, MG, NA, TPP

Explore in 3D

6XEP \| pdb_00006xep	Download File View File

Crystal structure of Thiamine-monophosphate kinase from Stenotrophomonas maltophilia K279a

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

To be published

Released	2020-06-24
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Stenotrophomonas maltophilia K279a
Macromolecule	Thiamine-monophosphate kinase (protein)
Unique Ligands	EDO, NA

Explore in 3D

8YKS \| pdb_00008yks	Download File View File

PaThiL in complex with AMP-PNP

Lin, J.Q., Chung, Z., Lescar, J.

To be published

Released	2025-03-12
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	Thiamine-monophosphate kinase (protein)
Unique Ligands	ANP, EDO, GOL, MG, NA, PG4

Explore in 3D

8YKU \| pdb_00008yku	Download File View File

PaThiL in complex with AMP-PNP and TMP

Lin, J.Q., Chung, Z., Lescar, J.

To be published

Released	2024-08-07
Method	X-RAY DIFFRACTION 2.17 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	Thiamine-monophosphate kinase (protein)
Unique Ligands	ACT, ANP, CA, EDO, PEG, PG4, TPS

1 to 14 of 14 Structures

Page 1 of 1

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1VQV | pdb_00001vqv

Crystal Structure of Thiamine Monophosphate Kinase (thil) from Aquifex Aeolicus

2YXZ | pdb_00002yxz

Crystal structure of tt0281 from Thermus thermophilus HB8

3C9R | pdb_00003c9r

AaThiL complexed with ATP

3C9S | pdb_00003c9s

AaThiL complexed with AMPPCP

3C9T | pdb_00003c9t

AaThiL complexed with AMPPCP and TMP

3C9U | pdb_00003c9u

AaThiL complexed with ADP and TPP

3MCQ | pdb_00003mcq

Crystal structure of Thiamine-monophosphate kinase (Mfla_0573) from METHYLOBACILLUS FLAGELLATUS KT at 1.91 A resolution

5CC8 | pdb_00005cc8

Structure of thiamine-monophosphate kinase from Acinetobacter baumannii in complex with AMPPNP

5CM7 | pdb_00005cm7

Structure of thiamine-monophosphate kinase from Acinetobacter baumannii in complex with adenosine diphosphate (ADP) and thiamine diphosphate (TPP)

5DD7 | pdb_00005dd7

Structure of thiamine-monophosphate kinase from Acinetobacter baumannii in complex with AMPPNP and thiamine-monophosphate

6MFM | pdb_00006mfm

Structure of thiamine-monophosphate kinase from Acinetobacter baumannii in complex with adenosine diphosphate (ADP) and thiamine diphosphate (TPP), orthorhombic crystal form

6XEP | pdb_00006xep

Crystal structure of Thiamine-monophosphate kinase from Stenotrophomonas maltophilia K279a

8YKS | pdb_00008yks

PaThiL in complex with AMP-PNP

8YKU | pdb_00008yku

PaThiL in complex with AMP-PNP and TMP

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1VQV | pdb_00001vqv

2YXZ | pdb_00002yxz

3C9R | pdb_00003c9r

3C9S | pdb_00003c9s

3C9T | pdb_00003c9t

3C9U | pdb_00003c9u

3MCQ | pdb_00003mcq

5CC8 | pdb_00005cc8

5CM7 | pdb_00005cm7

5DD7 | pdb_00005dd7

6MFM | pdb_00006mfm

6XEP | pdb_00006xep

8YKS | pdb_00008yks

8YKU | pdb_00008yku