2YXZ | pdb_00002yxz

Crystal structure of tt0281 from Thermus thermophilus HB8

PDB DOI: https://doi.org/10.2210/pdb2YXZ/pdb

Classification: TRANSFERASE
Organism(s): Thermus thermophilus HB8
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2007-04-27 Released: 2008-04-29
Deposition Author(s): Goto, M.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.90 Å
R-Value Free:
0.264 (Depositor), 0.263 (DCC)
R-Value Work:
0.225 (Depositor), 0.225 (DCC)
R-Value Observed:
0.225 (Depositor)

wwPDB Validation 3D Report Full Report

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This is version 1.2 of the entry. See complete history.

Literature

Crystal structure of tt0281 from Thermus thermophilus HB8

Matsushita, T., Kan, M., Goto, M., Miyahara, I., Kamiya, N.

To be published.

Macromolecule Content

Total Structure Weight: 131.86 kDa
Atom Count: 9,254
Modeled Residue Count: 1,219
Deposited Residue Count: 1,244
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Thiamin-monophosphate kinase	A, B, C, D	311	Thermus thermophilus HB8	Mutation(s): 0 EC: 2.7.4.16
UniProt
Find proteins for Q5SL69 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SL69 Go to UniProtKB: Q5SL69
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q5SL69
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.90 Å
R-Value Free: 0.264 (Depositor), 0.263 (DCC)
R-Value Work: 0.225 (Depositor), 0.225 (DCC)
R-Value Observed: 0.225 (Depositor)

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 141.564	α = 90
b = 52.19	β = 108.33
c = 181.124	γ = 90

Software Package:

Software Name	Purpose
CNS	refinement
HKL-2000	data collection
HKL-2000	data reduction
HKL-2000	data scaling
SHARP	phasing

Structure Validation

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View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2008-04-29

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2008-04-29
Type: Initial release
Version 1.1: 2011-07-13
Changes: Source and taxonomy, Version format compliance
Version 1.2: 2024-03-13
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.