RCSB PDB: Search

1KGQ \| pdb_00001kgq	Download File View File

Crystal Structure of Tetrahydrodipicolinate N-Succinyltransferase in Complex with L-2-aminopimelate and Succinamide-CoA

Beaman, T.W., Vogel, K.W., Drueckhammer, D.G., Blanchard, J.S., Roderick, S.L.

(2002) Protein Sci 11: 974-979

Released	2002-04-03
Method	X-RAY DIFFRACTION 2 Å
Organisms	Mycobacterium tuberculosis variant bovis
Macromolecule	2,3,4,5-TETRAHYDROPYRIDINE-2-CARBOXYLATE N-SUCCINYLTRANSFERASE (protein)
Unique Ligands	NPI, SCO

Explore in 3D

1KGT \| pdb_00001kgt	Download File View File

Crystal Structure of Tetrahydrodipicolinate N-Succinyltransferase in Complex with Pimelate and Succinyl-CoA

Beaman, T.W., Vogel, K.W., Drueckhammer, D.G., Blanchard, J.S., Roderick, S.L.

(2002) Protein Sci 11: 974-979

Released	2002-04-03
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Mycobacterium tuberculosis variant bovis
Macromolecule	2,3,4,5-TETRAHYDROPYRIDINE-2-CARBOXYLATE N-SUCCINYLTRANSFERASE (protein)
Unique Ligands	PML, SCA

Explore in 3D

1TDT \| pdb_00001tdt	Download File View File

THREE-DIMENSIONAL STRUCTURE OF TETRAHYDRODIPICOLINATE-N-SUCCINYLTRANSFERASE

Beaman, T.W., Binder, D.W., Blanchard, J.S., Roderick, S.L.

(1997) Biochemistry 36: 489-494

Released	1997-06-05
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Mycobacterium tuberculosis variant bovis
Macromolecule	TETRAHYDRODIPICOLINATE-N-SUCCINYLTRANSFERASE (protein)

Explore in 3D

2RIJ \| pdb_00002rij	Download File View File

Crystal structure of a putative 2,3,4,5-tetrahydropyridine-2-carboxylate n-succinyltransferase (cj1605c, dapd) from campylobacter jejuni at 1.90 A resolution

Joint Center for Structural Genomics (JCSG)

To be published

Released	2007-10-23
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Campylobacter jejuni
Macromolecule	Putative 2,3,4,5-tetrahydropyridine-2-carboxylate N- succinyltransferase (protein)
Unique Ligands	CIT, CL, GOL

Explore in 3D

2TDT \| pdb_00002tdt	Download File View File

COMPLEX OF TETRAHYDRODIPICOLINATE N-SUCCINYLTRANSFERASE WITH 2-AMINOPIMELATE AND COENZYME A

Beaman, T.W., Blanchard, J.S., Roderick, S.L.

(1998) Biochemistry 37: 10363-10369

Released	1998-10-14
Method	X-RAY DIFFRACTION 2 Å
Organisms	Mycobacterium tuberculosis variant bovis
Macromolecule	TETRAHYDRODIPICOLINATE N-SUCCINYLTRANSFERASE (protein)
Unique Ligands	COA, NPI

Explore in 3D

3BXY \| pdb_00003bxy	Download File View File

Crystal structure of tetrahydrodipicolinate N-succinyltransferase from E. coli

Kozlov, G., Gehring, K., Montreal-Kingston Bacterial Structural Genomics Initiative (BSGI)

(2008) FEBS Lett 582: 623-626

Released	2008-01-29
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli O157:H7
Macromolecule	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (protein)

Explore in 3D

3EG4 \| pdb_00003eg4	Download File View File

Crystal structure of 2,3,4,5-Tetrahydropyridine-2-carboxylate N-Succinyltransferase from Brucella melitensis biovar abortus 2308

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

To be published

Released	2008-09-23
Method	X-RAY DIFFRACTION 1.87 Å
Organisms	Brucella suis
Macromolecule	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (protein)

Explore in 3D

3FSX \| pdb_00003fsx	Download File View File

Structure of tetrahydrodipicolinate N-succinyltransferase (Rv1201c; DapD) from Mycobacterium tuberculosis

Schuldt, L., Weyand, S., Kefala, G., Weiss, M.S.

(2009) J Mol Biology 389: 863-879

Released	2009-06-23
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Tetrahydrodipicolinate N-succinyltransferase (protein)
Unique Ligands	ACY, MG, MPD, NA

Explore in 3D

3FSY \| pdb_00003fsy	Download File View File

Structure of tetrahydrodipicolinate N-succinyltransferase (Rv1201c;DapD) in complex with succinyl-CoA from Mycobacterium tuberculosis

Schuldt, L., Weyand, S., Kefala, G., Weiss, M.S.

(2009) J Mol Biology 389: 863-879

Released	2009-06-23
Method	X-RAY DIFFRACTION 1.97 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Tetrahydrodipicolinate N-succinyltransferase (protein)
Unique Ligands	ACY, MG, MPD, NA, SCA

Explore in 3D

3GOS \| pdb_00003gos	Download File View File

The crystal structure of 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase from Yersinia pestis CO92

Zhang, R., Maltseva, N., Kwon, K., Anderson, W., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)

To be published

Released	2009-05-12
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Yersinia pestis
Macromolecule	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (protein)
Unique Ligands	MG

Explore in 3D

3R5A \| pdb_00003r5a	Download File View File

Pseudomonas aeruginosa DapD (PA3666) in complex with D-2-aminopimelate

Sandalova, T., Schnell, R., Schneider, G.

(2012) PLoS One 7: e31133-e31133

Released	2012-01-25
Method	X-RAY DIFFRACTION 1.89 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	Tetrahydrodipicolinate N-succinyletransferase (protein)
Unique Ligands	GOL, P0A

Explore in 3D

3R5B \| pdb_00003r5b	Download File View File

Pseudomonas aeruginosa DapD (PA3666) in complex with L-2-aminopimelate

Sandalova, T., Schnell, R., Schneider, G.

(2012) PLoS One 7: e31133-e31133

Released	2012-01-25
Method	X-RAY DIFFRACTION 2.51 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	Tetrahydrodipicolinate N-succinyletransferase (protein)
Unique Ligands	NPI

Explore in 3D

3R5C \| pdb_00003r5c	Download File View File

Pseudomonas aeruginosa DapD (PA3666) in complex with CoA and succinate

Sandalova, T., Schnell, R., Schneider, G.

(2012) PLoS One 7: e31133-e31133

Released	2012-01-25
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	Tetrahydrodipicolinate N-succinyletransferase (protein)
Unique Ligands	COA, SIN

Explore in 3D

3R5D \| pdb_00003r5d	Download File View File

Pseudomonas aeruginosa DapD (PA3666) apoprotein

Sandalova, T., Schnell, R., Schneider, G.

(2012) PLoS One 7: e31133-e31133

Released	2012-01-25
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	Tetrahydrodipicolinate N-succinyletransferase (protein)
Unique Ligands	GOL

Explore in 3D

3TDT \| pdb_00003tdt	Download File View File

COMPLEX OF TETRAHYDRODIPICOLINATE N-SUCCINYLTRANSFERASE WITH 2-AMINO-6-OXOPIMELATE AND COENZYME A

Beaman, T.W., Blanchard, J.S., Roderick, S.L.

(1998) Biochemistry 37: 10363-10369

Released	1998-10-14
Method	X-RAY DIFFRACTION 2 Å
Organisms	Mycobacterium tuberculosis variant bovis
Macromolecule	TETRAHYDRODIPICOLINATE N-SUCCINYLTRANSFERASE (protein)
Unique Ligands	26P, COA

Explore in 3D

3TK8 \| pdb_00003tk8	Download File View File

Structure of a 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase from Burkholderia pseudomallei

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

To be published

Released	2011-10-12
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Burkholderia pseudomallei 1710b
Macromolecule	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (protein)
Unique Ligands	EDO, SO4, UNL

Explore in 3D

5E3P \| pdb_00005e3p	Download File View File

Crystal structure of DapD from Corynebacterium glutamicum

Sagong, H.-Y., Kim, K.-J.

(2015) J Agric Food Chem 63: 10641-10646

Released	2015-11-04
Method	X-RAY DIFFRACTION 2.01 Å
Organisms	Corynebacterium glutamicum ATCC 13032
Macromolecule	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (protein)
Unique Ligands	PG4, SO4

Explore in 3D

5E3Q \| pdb_00005e3q	Download File View File

Crystal structure of DapD in complex with succinyl-CoA from Corynebacterium glutamicum

Sagong, H.-Y., Kim, K.-J.

(2015) J Agric Food Chem 63: 10641-10646

Released	2015-11-04
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Corynebacterium glutamicum ATCC 13032
Macromolecule	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (protein)
Unique Ligands	SCA

Explore in 3D

5E3R \| pdb_00005e3r	Download File View File

Crystal structure of DapD in complex with 2-aminopimelate from Corynebacterium glutamicum

Sagong, H.-Y., Kim, K.-J.

(2015) J Agric Food Chem 63: 10641-10646

Released	2015-11-04
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Corynebacterium glutamicum ATCC 13032
Macromolecule	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (protein)
Unique Ligands	NPI

Explore in 3D

6AMY \| pdb_00006amy	Download File View File

Crystal structure of a 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase from Acinetobacter baumannii

Seattle Structural Genomics Center for Infectious Disease, Edwards, T.E., Seattle Structural Genomics Center for Infectious Disease (SSGCID)

To be published

Released	2017-09-06
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Acinetobacter baumannii
Macromolecule	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (protein)

Explore in 3D

6AMZ \| pdb_00006amz	Download File View File

Crystal structure of a domain swapped 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase from Acinetobacter baumannii

Edwards, T.E., Seattle Structural Genomics Center for Infectious Disease (SSGCID)

To be published

Released	2017-08-23
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Acinetobacter baumannii
Macromolecule	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (protein)
Unique Ligands	CA, MRD

Explore in 3D

6CKT \| pdb_00006ckt	Download File View File

Crystal structure of 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase from Legionella pneumophila Philadelphia 1

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

To be published

Released	2018-03-21
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Legionella pneumophila subsp. pneumophila str. Philadelphia 1
Macromolecule	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (protein)
Unique Ligands	EDO

Explore in 3D

6WQM \| pdb_00006wqm	Download File View File

Crystal structure of 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase from Bartonella henselae

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

To be published

Released	2020-05-13
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Bartonella henselae str. Houston-1
Macromolecule	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (protein)
Unique Ligands	CL

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1KGQ | pdb_00001kgq

1KGT | pdb_00001kgt

1TDT | pdb_00001tdt

2RIJ | pdb_00002rij

2TDT | pdb_00002tdt

3BXY | pdb_00003bxy

3EG4 | pdb_00003eg4

3FSX | pdb_00003fsx

3FSY | pdb_00003fsy

3GOS | pdb_00003gos

3R5A | pdb_00003r5a

3R5B | pdb_00003r5b

3R5C | pdb_00003r5c

3R5D | pdb_00003r5d

3TDT | pdb_00003tdt

3TK8 | pdb_00003tk8

5E3P | pdb_00005e3p

5E3Q | pdb_00005e3q

5E3R | pdb_00005e3r

6AMY | pdb_00006amy

6AMZ | pdb_00006amz

6CKT | pdb_00006ckt

6WQM | pdb_00006wqm