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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Enzyme Classification Number = 1.4.1.2

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Search Summary

This query matches 19 Structures.

Refinements

Structure Determination Methodology

experimental (19)

Scientific Name of Source Organism

	Bos taurus (6)
	[Clostridium] symbiosum (5)
	Bacillus subtilis (2)
	Mycolicibacterium smegmatis MC2 155 (2)
	Bacillus subtilis subsp. subtilis NCIB 3610 = ATCC 6051 = DSM 10 (1)
	Escherichia coli (1)
	Peptoniphilus asaccharolyticus (1)
	Pyrobaculum islandicum (1)
	Thermococcus profundus (1)

Taxonomy

	Bacteria (11)
	Eukaryota (6)
	Archaea (2)

Experimental Method

	X-RAY DIFFRACTION (17)
	ELECTRON MICROSCOPY (2)

Polymer Entity Type

Protein (19)

Refinement Resolution (Å)

	1.5 - 2.0 (2)
	2.0 - 2.5 (5)
	2.5 - 3.0 (5)
	3.0 - 3.5 (2)
	3.5 - 4.0 (3)
	4.0 - 4.5 (1)
	> 4.5 (1)

Release Date

	1995 - 1999 (4)
	2000 - 2004 (2)
	2010 - 2014 (4)
	2015 - 2019 (6)
	2020 - 2024 (3)

Enzyme Classification Name

Oxidoreductases (19)

Symmetry Type

Dihedral (19)

SCOP Classification

Alpha and beta proteins (a/b) (13)

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1 to 19 of 19 Structures

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1AUP \| pdb_00001aup	Download File View File

GLUTAMATE DEHYDROGENASE

Baker, P.J., Waugh, M.L., Stillman, T.J., Turnbull, A.P., Rice, D.W.

(1997) Biochemistry 36: 16109-16115

Released	1998-03-18
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	[Clostridium] symbiosum
Macromolecule	NAD-SPECIFIC GLUTAMATE DEHYDROGENASE (protein)

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1BGV \| pdb_00001bgv	Download File View File

GLUTAMATE DEHYDROGENASE

Stillman, T.J., Baker, P.J., Britton, K.L., Rice, D.W.

(1993) J Mol Biology 234: 1131-1139

Released	1998-10-14
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	[Clostridium] symbiosum
Macromolecule	GLUTAMATE DEHYDROGENASE (protein)
Unique Ligands	GLU

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1EUZ \| pdb_00001euz	Download File View File

GLUTAMATE DEHYDROGENASE FROM THERMOCOCCUS PROFUNDUS IN THE UNLIGATED STATE

Nakasako, M.

(2001) Biochemistry 40: 3069-3079

Released	2001-04-25
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Thermococcus profundus
Macromolecule	GLUTAMATE DEHYDROGENASE (protein)
Unique Ligands	SO4

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1HRD \| pdb_00001hrd	Download File View File

GLUTAMATE DEHYDROGENASE

Britton, K.L., Baker, P.J., Stillman, T.J., Rice, D.W.

(1995) Structure 3: 1147-1158

Released	1997-03-12
Method	X-RAY DIFFRACTION 1.96 Å
Organisms	[Clostridium] symbiosum
Macromolecule	GLUTAMATE DEHYDROGENASE (protein)

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1K89 \| pdb_00001k89	Download File View File

K89L MUTANT OF GLUTAMATE DEHYDROGENASE

Stillman, T.J., Migueis, A.M.B., Wang, X.G., Baker, P.J., Britton, K.L., Engel, P.C., Rice, D.W.

(1999) J Mol Biology 285: 875-885

Released	1999-01-27
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	[Clostridium] symbiosum
Macromolecule	GLUTAMATE DEHYDROGENASE (protein)

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1V9L \| pdb_00001v9l	Download File View File

L-glutamate dehydrogenase from Pyrobaculum islandicum complexed with NAD

Bhuiya, M.W., Sakuraba, H., Ohshima, T., Imagawa, T., Katunuma, N., Tsuge, H.

(2005) J Mol Biology 345: 325-337

Released	2004-12-14
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Pyrobaculum islandicum
Macromolecule	glutamate dehydrogenase (protein)
Unique Ligands	NAD

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2YFH \| pdb_00002yfh	Download File View File

Structure of a Chimeric Glutamate Dehydrogenase

Oliveira, T., Panjikar, S., Sharkey, M.A., Carrigan, J.B., Hamza, M., Engel, P.C., Khan, A.R.

(2016) Acta Crystallogr F Struct Biol Commun 72: 462

Released	2012-04-04
Method	X-RAY DIFFRACTION 2.695 Å
Organisms	Escherichia coli [Clostridium] symbiosum
Macromolecule	GLUTAMATE DEHYDROGENASE, NAD-SPECIFIC GLUTAMATE DEHYDROGENASE, GLUTAMATE DEHYDROGENASE (protein)

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2YFQ \| pdb_00002yfq	Download File View File

Crystal structure of Glutamate dehydrogenase from Peptoniphilus asaccharolyticus

Oliveira, T., Panjikar, S., Carrigan, J.B., Sharkey, M.A., Hamza, M., Engel, P.C., Khan, A.R.

(2012) J Struct Biol 177: 543

Released	2011-11-23
Method	X-RAY DIFFRACTION 2.94 Å
Organisms	Peptoniphilus asaccharolyticus
Macromolecule	NAD-SPECIFIC GLUTAMATE DEHYDROGENASE (protein)
Unique Ligands	SO4

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3K8Z \| pdb_00003k8z	Download File View File

Crystal Structure of Gudb1 a decryptified secondary glutamate dehydrogenase from B. subtilis

Gunka, K., Newman, J.A., Commichau, F.M., Herzberg, C., Rodrigues, C., Hewitt, L., Lewis, R.J., Stulke, J.

(2010) J Mol Biology 400: 815-827

Released	2010-06-02
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Bacillus subtilis
Macromolecule	NAD-specific glutamate dehydrogenase (protein)

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3K92 \| pdb_00003k92	Download File View File

Crystal structure of a E93K mutant of the majour Bacillus subtilis glutamate dehydrogenase RocG

Gunka, K., Newman, J.A., Commichau, F.M., Herzberg, C., Rodrigues, C., Hewitt, L., Lewis, R.J., Stulke, J.

(2010) J Mol Biology 400: 815-827

Released	2010-06-02
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Bacillus subtilis
Macromolecule	NAD-specific glutamate dehydrogenase (protein)
Unique Ligands	PEG

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6DHD \| pdb_00006dhd	Download File View File

Bovine glutamate dehydrogenase complexed with NADH, GTP, glutamate

Smith, T.J.

(2001) J Mol Biology 307: 707-720

Released	2018-07-25
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Bos taurus
Macromolecule	Glutamate dehydrogenase 1, mitochondrial (protein)
Unique Ligands	GLU, GTP, NAI

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6DHK \| pdb_00006dhk	Download File View File

Bovine glutamate dehydrogenase complexed with ADP

Smith, T.J.

(2003) Biochemistry 42: 3446-3456

Released	2018-07-25
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Bos taurus
Macromolecule	Glutamate dehydrogenase 1, mitochondrial (protein)
Unique Ligands	ADP

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6DHL \| pdb_00006dhl	Download File View File

Bovine glutamate dehydrogenase complexed with epicatechin-3-gallate (ECG)

Smith, T.J.

(2011) J Biological Chem 286: 34164-34174

Released	2018-07-25
Method	X-RAY DIFFRACTION 3.624 Å
Organisms	Bos taurus
Macromolecule	Glutamate dehydrogenase 1, mitochondrial (protein)
Unique Ligands	XEG

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6DHM \| pdb_00006dhm	Download File View File

Bovine glutamate dehydrogenase complexed with zinc

Smith, T.J.

(2011) FEBS J 278: 3140-3151

Released	2018-07-25
Method	X-RAY DIFFRACTION 3 Å
Organisms	Bos taurus
Macromolecule	Glutamate dehydrogenase 1, mitochondrial (protein)
Unique Ligands	GLU, GTP, NDP, ZN

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6DHN \| pdb_00006dhn	Download File View File

Bovine glutamate dehydrogenase complexed with Eu3+

Smith, T.J.

(2011) FEBS J 278: 3140-3151

Released	2018-07-25
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Bos taurus
Macromolecule	Glutamate dehydrogenase 1, mitochondrial (protein)
Unique Ligands	GLU, GTP, NAI

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6DHQ \| pdb_00006dhq	Download File View File

Bovine glutamate dehydrogenase complexed with NADPH, glutamate, and GTP

Smith, T.J.

(2001) J Mol Biology 307: 707-720

Released	2018-07-25
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Bos taurus
Macromolecule	Glutamate dehydrogenase 1, mitochondrial (protein)
Unique Ligands	GLU, GTP, NDP

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7A1D \| pdb_00007a1d	Download File View File

Cryo-EM map of the large glutamate dehydrogenase composed of 180 kDa subunits from Mycobacterium smegmatis (open conformation)

Lazaro, M., Melero, R., Huet, C., Lopez-Alonso, J.P., Delgado, S., Dodu, A., Bruch, E.M., Abriata, L.A., Alzari, P.M., Valle, M., Lisa, M.N.

(2021) Commun Biol 4: 684-684

Released	2021-06-09
Method	ELECTRON MICROSCOPY 4.19 Å
Organisms	Mycolicibacterium smegmatis MC2 155
Macromolecule	NAD-specific glutamate dehydrogenase (protein)

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7JSR \| pdb_00007jsr	Download File View File

Crystal structure of the large glutamate dehydrogenase composed of 180 kDa subunits from Mycobacterium smegmatis

Lazaro, M., Melero, R., Huet, C., Lopez-Alonso, J.P., Delgado, S., Dodu, A., Bruch, E.M., Abriata, L.A., Alzari, P.M., Valle, M., Lisa, M.N.

(2021) Commun Biol 4: 684-684

Released	2021-06-09
Method	X-RAY DIFFRACTION 6.27 Å
Organisms	Mycolicibacterium smegmatis MC2 155
Macromolecule	NAD-specific glutamate dehydrogenase (protein)

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7MFT \| pdb_00007mft	Download File View File

Glutamate synthase, glutamate dehydrogenase counter-enzyme complex (GudB6-GltA6-GltB6)

Jayaraman, V., Lee, D.J., Elad, N., Fraser, J.S., Tawfik, D.S.

(2022) Nat Chem Biol 18: 161-170

Released	2022-01-05
Method	ELECTRON MICROSCOPY 3.9 Å
Organisms	Bacillus subtilis subsp. subtilis NCIB 3610 = ATCC 6051 = DSM 10
Macromolecule	Glutamate dehydrogenase (protein) Glutamate synthase (NADPH) large chain (protein) Glutamate synthase (NADPH) small chain (protein)
Unique Ligands	F3S, FAD, FMN, SF4

1 to 19 of 19 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1AUP | pdb_00001aup

GLUTAMATE DEHYDROGENASE

1BGV | pdb_00001bgv

GLUTAMATE DEHYDROGENASE

1EUZ | pdb_00001euz

GLUTAMATE DEHYDROGENASE FROM THERMOCOCCUS PROFUNDUS IN THE UNLIGATED STATE

1HRD | pdb_00001hrd

GLUTAMATE DEHYDROGENASE

1K89 | pdb_00001k89

K89L MUTANT OF GLUTAMATE DEHYDROGENASE

1V9L | pdb_00001v9l

L-glutamate dehydrogenase from Pyrobaculum islandicum complexed with NAD

2YFH | pdb_00002yfh

Structure of a Chimeric Glutamate Dehydrogenase

2YFQ | pdb_00002yfq

Crystal structure of Glutamate dehydrogenase from Peptoniphilus asaccharolyticus

3K8Z | pdb_00003k8z

Crystal Structure of Gudb1 a decryptified secondary glutamate dehydrogenase from B. subtilis

3K92 | pdb_00003k92

Crystal structure of a E93K mutant of the majour Bacillus subtilis glutamate dehydrogenase RocG

6DHD | pdb_00006dhd

Bovine glutamate dehydrogenase complexed with NADH, GTP, glutamate

6DHK | pdb_00006dhk

Bovine glutamate dehydrogenase complexed with ADP

6DHL | pdb_00006dhl

Bovine glutamate dehydrogenase complexed with epicatechin-3-gallate (ECG)

6DHM | pdb_00006dhm

Bovine glutamate dehydrogenase complexed with zinc

6DHN | pdb_00006dhn

Bovine glutamate dehydrogenase complexed with Eu3+

6DHQ | pdb_00006dhq

Bovine glutamate dehydrogenase complexed with NADPH, glutamate, and GTP

7A1D | pdb_00007a1d

Cryo-EM map of the large glutamate dehydrogenase composed of 180 kDa subunits from Mycobacterium smegmatis (open conformation)

7JSR | pdb_00007jsr

Crystal structure of the large glutamate dehydrogenase composed of 180 kDa subunits from Mycobacterium smegmatis

7MFT | pdb_00007mft

Glutamate synthase, glutamate dehydrogenase counter-enzyme complex (GudB6-GltA6-GltB6)

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1AUP | pdb_00001aup

1BGV | pdb_00001bgv

1EUZ | pdb_00001euz

1HRD | pdb_00001hrd

1K89 | pdb_00001k89

1V9L | pdb_00001v9l

2YFH | pdb_00002yfh

2YFQ | pdb_00002yfq

3K8Z | pdb_00003k8z

3K92 | pdb_00003k92

6DHD | pdb_00006dhd

6DHK | pdb_00006dhk

6DHL | pdb_00006dhl

6DHM | pdb_00006dhm

6DHN | pdb_00006dhn

6DHQ | pdb_00006dhq

7A1D | pdb_00007a1d

7JSR | pdb_00007jsr

7MFT | pdb_00007mft