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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy Name (Full Lineage) = "Sinapis alba"

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Search Summary

This query matches 25 Structures.

Refinements

Structure Determination Methodology

experimental (25)

Scientific Name of Source Organism

	Sinapis alba (25)
	DNA molecule (2)
	synthetic construct (2)

Taxonomy

	Eukaryota (25)
	other sequences (2)
	unclassified sequences (2)

Experimental Method

	X-RAY DIFFRACTION (20)
	ELECTRON MICROSCOPY (5)

Polymer Entity Type

	Protein (25)
	DNA (2)
	RNA (2)

Refinement Resolution (Å)

	1.0 - 1.5 (3)
	1.5 - 2.0 (10)
	2.0 - 2.5 (9)
	2.5 - 3.0 (2)
	3.5 - 4.0 (1)

Release Date

	1995 - 1999 (1)
	2000 - 2004 (14)
	2005 - 2009 (4)
	2010 - 2014 (1)
	2020 - 2024 (5)

Enzyme Classification Name

	Transferases (7)
	Hydrolases (18)

Symmetry Type

	Cyclic (18)
	Asymmetric (7)

SCOP Classification

	Alpha and beta proteins (a/b) (18)
	All alpha proteins (1)

AllSelected

1 to 25 of 25 Structures

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1DWA \| pdb_00001dwa	Download File View File

STUDY ON RADIATION DAMAGE ON A CRYOCOOLED CRYSTAL. PART 1: STRUCTURE PRIOR TO IRRADIATION

Burmeister, W.P.

(2000) Acta Crystallogr D Biol Crystallogr 56: 328

Released	2000-03-03
Method	X-RAY DIFFRACTION 2 Å
Organisms	Sinapis alba
Macromolecule	MYROSINASE MA1 (protein)
Unique Ligands	GOL, NAG, SO4, ZN
Unique branched monosaccharides	BMA, FUC, MAN, NAG, XYP

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1DWF \| pdb_00001dwf	Download File View File

Study on radiation damage on a cryocooled crystal. Part 2: Structure after irradiation with 9.1*10e15 photons/mm2

Burmeister, W.P.

(2000) Acta Crystallogr D Biol Crystallogr 56: 328

Released	2000-03-03
Method	X-RAY DIFFRACTION 2 Å
Organisms	Sinapis alba
Macromolecule	MYROSINASE MA1 (protein)
Unique Ligands	GOL, NAG, SO4, ZN
Unique branched monosaccharides	BMA, FUC, MAN, NAG, XYP

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1DWG \| pdb_00001dwg	Download File View File

STUDY ON RADIATION DAMAGE ON A CRYOCOOLED CRYSTAL: PART 3 STRUCTURE AFTER IRRADIATION WITH 18.2*10E15 PHOTONS/MM2.

Burmeister, W.P.

(2000) Acta Crystallogr D Biol Crystallogr 56: 328

Released	2000-03-03
Method	X-RAY DIFFRACTION 2 Å
Organisms	Sinapis alba
Macromolecule	MYROSINASE MA1 (protein)
Unique Ligands	GOL, NAG, SO4, ZN
Unique branched monosaccharides	BMA, FUC, MAN, NAG, XYP

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1DWH \| pdb_00001dwh	Download File View File

Study on radiation damage on a cryocooled crystal. Part 4: Structure after irradiation with 27.2*10e15 photons/mm2

Burmeister, W.P.

(2000) Acta Crystallogr D Biol Crystallogr 56: 328

Released	2000-03-03
Method	X-RAY DIFFRACTION 2 Å
Organisms	Sinapis alba
Macromolecule	MYROSINASE MA1 (protein)
Unique Ligands	GOL, NAG, SO4, ZN
Unique branched monosaccharides	BMA, FUC, MAN, NAG, XYP

Explore in 3D

1DWI \| pdb_00001dwi	Download File View File

Study on radiation damage on a cryocooled crystal. Part 5: Structure after irradiation with 54.0*10e15 photons/mm2

Burmeister, W.P.

(2000) Acta Crystallogr D Biol Crystallogr 56: 328

Released	2000-03-03
Method	X-RAY DIFFRACTION 2 Å
Organisms	Sinapis alba
Macromolecule	MYROSINASE MA1 (protein)
Unique Ligands	GOL, NAG, SO4, ZN
Unique branched monosaccharides	BMA, FUC, MAN, NAG, XYP

Explore in 3D

1DWJ \| pdb_00001dwj	Download File View File

study on radiation damage on a cryocooled crystal. Refined part 6: structure after a radiation dose of 54*10e15 photons/mm2

Burmeister, W.P.

(2000) Acta Crystallogr D Biol Crystallogr 56: 328

Released	2000-03-03
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Sinapis alba
Macromolecule	MYROSINASE MA1 (protein)
Unique Ligands	GOL, NAG, SO4, ZN
Unique branched monosaccharides	BMA, FUC, MAN, NAG, XYP

Explore in 3D

1E4M \| pdb_00001e4m	Download File View File

MYROSINASE FROM SINAPIS ALBA

Burmeister, W.P.

(2000) J Biological Chem 275: 39385

Released	2001-05-25
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Sinapis alba
Macromolecule	MYROSINASE MA1 (protein)
Unique Ligands	GOL, NAG, SO4, ZN
Unique branched monosaccharides	BMA, FUC, MAN, NAG, XYP

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1E6Q \| pdb_00001e6q	Download File View File

MYROSINASE FROM SINAPIS ALBA with the bound transition state analogue gluco-tetrazole

Burmeister, W.P.

(2000) J Biological Chem 275: 39385

Released	2001-01-05
Method	X-RAY DIFFRACTION 1.35 Å
Organisms	Sinapis alba
Macromolecule	MYROSINASE MA1 (protein)
Unique Ligands	GOL, NAG, NTZ, SO4, ZN
Unique branched monosaccharides	BMA, FUC, MAN, NAG, XYP

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1E6S \| pdb_00001e6s	Download File View File

MYROSINASE FROM SINAPIS ALBA with bound gluco-hydroximolactam and sulfate

Burmeister, W.P.

(2000) J Biological Chem 275: 39385

Released	2000-09-06
Method	X-RAY DIFFRACTION 1.35 Å
Organisms	Sinapis alba
Macromolecule	MYROSINASE MA1 (protein)
Unique Ligands	GOL, GOX, NAG, SO4, ZN
Unique branched monosaccharides	BMA, FUC, MAN, NAG, XYP

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1E6X \| pdb_00001e6x	Download File View File

MYROSINASE FROM SINAPIS ALBA with a bound transition state analogue,D-glucono-1,5-lactone

Burmeister, W.P.

(2000) J Biological Chem 275: 39385

Released	2001-01-05
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Sinapis alba
Macromolecule	MYROSINASE MA1 (protein)
Unique Ligands	GOL, LGC, NAG, SO4, ZN
Unique branched monosaccharides	BMA, FUC, MAN, NAG, XYP

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1E70 \| pdb_00001e70	Download File View File

2-F-glucosylated MYROSINASE FROM SINAPIS ALBA

Burmeister, W.P.

(2000) J Biological Chem 275: 39385

Released	2001-01-05
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Sinapis alba
Macromolecule	MYROSINASE MA1 (protein)
Unique Ligands	G2F, GOL, NAG, SO4, ZN
Unique branched monosaccharides	BMA, FUC, MAN, NAG, XYP

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1E71 \| pdb_00001e71	Download File View File

MYROSINASE FROM SINAPIS ALBA with bound ascorbate

Burmeister, W.P.

(2000) J Biological Chem 275: 39385

Released	2001-01-05
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Sinapis alba
Macromolecule	MYROSINASE MA1 (protein)
Unique Ligands	ASC, GOL, NAG, SO4, ZN
Unique branched monosaccharides	BMA, FUC, MAN, NAG, XYP

Explore in 3D

1E72 \| pdb_00001e72	Download File View File

Myrosinase from Sinapis alba with bound gluco-hydroximolactam and sulfate or ascorbate

Burmeister, W.P.

(2000) J Biological Chem 275: 39385-39393

Released	2001-01-05
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Sinapis alba
Macromolecule	MYROSINASE MA1 (protein)
Unique Ligands	ASC, GOL, GOX, NAG, SO4, ZN
Unique branched monosaccharides	BMA, FUC, MAN, NAG, XYP

Explore in 3D

1E73 \| pdb_00001e73	Download File View File

2-F-glucosylated MYROSINASE FROM SINAPIS ALBA with bound L-ascorbate

Burmeister, W.P.

(2000) J Biological Chem 275: 39385

Released	2001-01-05
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Sinapis alba
Macromolecule	MYROSINASE MA1 (protein)
Unique Ligands	ASC, G2F, GOL, NAG, SO4, ZN
Unique branched monosaccharides	BMA, FUC, MAN, NAG, XYP

Explore in 3D

1MYR \| pdb_00001myr	Download File View File

MYROSINASE FROM SINAPIS ALBA

Burmeister, W.P., Iori, R., Palmieri, S., Henrissat, B.

(1997) Structure 5: 663-675

Released	1997-06-16
Method	X-RAY DIFFRACTION 1.64 Å
Organisms	Sinapis alba
Macromolecule	MYROSINASE (protein)
Unique Ligands	GOL, NAG, SO4, ZN
Unique branched monosaccharides	BMA, FUC, MAN, NAG, XYP

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1W9B \| pdb_00001w9b	Download File View File

S. alba myrosinase in complex with carba-glucotropaeolin

Bourderioux, A., Lefoix, M., Gueyrard, D., Tatibouet, A., Cottaz, S., Arzt, S., Burmeister, W.P., Rollin, P.

(2005) Org Biomol Chem 3: 1872-1879

Released	2005-05-19
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Sinapis alba
Macromolecule	GLYCOSIDASE (protein)
Unique Ligands	CGT, GOL, NAG, SO4, ZN
Unique branched monosaccharides	BMA, FUC, MAN, NAG, XYP

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1W9D \| pdb_00001w9d	Download File View File

S. alba myrosinase in complex with S-ethyl phenylacetothiohydroximate- O-sulfate

Bourderioux, A., Lefoix, M., Gueyrard, D., Tatibouet, A., Cottaz, S., Arzt, S., Burmeister, W.P., Rollin, P.

(2005) Org Biomol Chem 3: 1872

Released	2005-05-19
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Sinapis alba
Macromolecule	GLYCOSIDASE (protein)
Unique Ligands	GOL, NAG, SEH, SO4, ZN
Unique branched monosaccharides	BMA, FUC, MAN, NAG, XYP

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2J1O \| pdb_00002j1o	Download File View File

Geranylgeranyl diphosphate synthase from Sinapis alba

Kloer, D.P., Welsch, R., Beyer, P., Schulz, G.E.

(2006) Biochemistry 45: 15197

Released	2007-01-02
Method	X-RAY DIFFRACTION 2 Å
Organisms	Sinapis alba
Macromolecule	GERANYLGERANYL PYROPHOSPHATE SYNTHETASE (protein)
Unique Ligands	GOL

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2J1P \| pdb_00002j1p	Download File View File

Geranylgeranyl diphosphate synthase from Sinapis alba in complex with GGPP

Kloer, D.P., Welsch, R., Beyer, P., Schulz, G.E.

(2006) Biochemistry 45: 15197

Released	2007-01-02
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Sinapis alba
Macromolecule	GERANYLGERANYL PYROPHOSPHATE SYNTHETASE (protein)
Unique Ligands	BME, GRG, PGO

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2WXD \| pdb_00002wxd	Download File View File

A MICROMOLAR O-SULFATED THIOHYDROXIMATE INHIBITOR BOUND TO PLANT MYROSINASE

Besle, A., Burmeister, W.P.

(2010) Acta Crystallogr Sect F Struct Biol Cryst Commun 66: 152

Released	2010-02-09
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Sinapis alba
Macromolecule	MYROSINASE (protein)
Unique Ligands	E18, GOL, NAG, SO4, ZN
Unique branched monosaccharides	BMA, FUC, MAN, NAG, XYP

Explore in 3D

8QMA \| pdb_00008qma	Download File View File

Structure of the plastid-encoded RNA polymerase complex (PEP) from Sinapis alba

do Prado, P.F.V., Ahrens, F.M., Pfannschmidt, T., Hillen, H.S.

(2024) Mol Cell 84: 910

Released	2024-03-06
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	Sinapis alba
Macromolecule	Unique protein chains: 17
Unique Ligands	FE, SAM, ZN

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8R5O \| pdb_00008r5o	Download File View File

Plastid-encoded RNA polymerase

Webster, M.W., Pramanick, I., Vergara-Cruces, A.

(2024) Cell 187: 1145-1159.e21

Released	2024-03-13
Method	ELECTRON MICROSCOPY 2.49 Å
Organisms	Sinapis alba
Macromolecule	Unique protein chains: 18
Unique Ligands	FE, SAH, ZN

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8R6S \| pdb_00008r6s	Download File View File

Plastid-encoded RNA polymerase (Integrated model)

Webster, M.W., Pramanick, I., Vergara-Cruces, A.

(2024) Cell 187: 1145-1159.e21

Released	2024-03-13
Method	ELECTRON MICROSCOPY 2.49 Å
Organisms	Sinapis alba
Macromolecule	Unique protein chains: 19
Unique Ligands	FE, SAH, ZN

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8RAS \| pdb_00008ras	Download File View File

Plastid-encoded RNA polymerase transcription elongation complex

Webster, M.W., Pramanick, I., Vergara-Cruces, A.

(2024) Cell 187: 1145-1159.e21

Released	2024-03-06
Method	ELECTRON MICROSCOPY 2.62 Å
Organisms	DNA molecule Sinapis alba synthetic construct
Macromolecule	Unique protein chains: 18 Unique nucleic acid chains: 3
Unique Ligands	FE, MG, SAH, ZN

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8RDJ \| pdb_00008rdj	Download File View File

Plastid-encoded RNA polymerase transcription elongation complex (Integrated model)

Webster, M.W., Pramanick, I., Vergara-Cruces, A.

(2024) Cell 187: 1145-1159.e21

Released	2024-03-13
Method	ELECTRON MICROSCOPY 2.62 Å
Organisms	DNA molecule Sinapis alba synthetic construct
Macromolecule	Unique protein chains: 19 Unique nucleic acid chains: 3
Unique Ligands	FE, MG, SAH, ZN

1 to 25 of 25 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1DWA | pdb_00001dwa

1DWF | pdb_00001dwf

1DWG | pdb_00001dwg

1DWH | pdb_00001dwh

1DWI | pdb_00001dwi

1DWJ | pdb_00001dwj

1E4M | pdb_00001e4m

1E6Q | pdb_00001e6q

1E6S | pdb_00001e6s

1E6X | pdb_00001e6x

1E70 | pdb_00001e70

1E71 | pdb_00001e71

1E72 | pdb_00001e72

1E73 | pdb_00001e73

1MYR | pdb_00001myr

1W9B | pdb_00001w9b

1W9D | pdb_00001w9d

2J1O | pdb_00002j1o

2J1P | pdb_00002j1p

2WXD | pdb_00002wxd

8QMA | pdb_00008qma

8R5O | pdb_00008r5o

8R6S | pdb_00008r6s

8RAS | pdb_00008ras

8RDJ | pdb_00008rdj