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235,183 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy Name (Full Lineage) = "Amycolatopsis sp. ATCC 39116"

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Search Summary

This query matches 27 Structures.

Refinements

Structure Determination Methodology

experimental (27)

Scientific Name of Source Organism

Amycolatopsis sp. ATCC 39116 (27)

Taxonomy

Bacteria (27)

Experimental Method

X-RAY DIFFRACTION (27)

Polymer Entity Type

Protein (27)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (21)
	2.0 - 2.5 (4)

Release Date

	2010 - 2014 (3)
	2015 - 2019 (14)
	2020 - 2024 (10)

Enzyme Classification Name

Oxidoreductases (23)

Symmetry Type

	Asymmetric (25)
	Cyclic (2)

SCOP Classification

All alpha proteins (24)

AllSelected

1 to 25 of 27 Structures

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Explore in 3D

3T9W \| pdb_00003t9w	Download File View File

Small laccase from Amycolatopsis sp. ATCC 39116

Lukk, T., Majumdar, S., Gerlt, J.A., Nair, S.K.

(2014) Biochemistry 53: 4047-4058

Released	2012-08-29
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Amycolatopsis sp. ATCC 39116
Macromolecule	small laccase, multi-copper oxidase (protein)
Unique Ligands	CU, NI, PEO

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3TA4 \| pdb_00003ta4	Download File View File

Small laccase from Amycolatopsis sp. ATCC 39116 complexed with 1-(3,4-dimethoxyphenyl)-2-(2-methoxyphenoxy)-1,3-dihydroxypropane

Lukk, T., Majumdar, S., Gerlt, J.A., Nair, S.K.

(2014) Biochemistry 53: 4047-4058

Released	2012-09-12
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Amycolatopsis sp. ATCC 39116
Macromolecule	small laccase, multi-copper oxidase (protein)
Unique Ligands	CU, TO2

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4G2C \| pdb_00004g2c	Download File View File

DyP2 from Amycolatopsis sp. ATCC 39116

Brown, M.E., Barros, T., Chang, M.C.Y.

(2012) ACS Chem Biol 7: 2074-2081

Released	2012-10-24
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Amycolatopsis sp. ATCC 39116
Macromolecule	DyP2 (protein)
Unique Ligands	ACT, HEM, MN

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5NCB \| pdb_00005ncb	Download File View File

Crystal structure of Amycolatopsis cytochrome P450 GcoA in complex with guaiacol.

Mallinson, S.J.B., Johnson, C.W., Neidle, E.L., Beckham, G.T., McGeehan, J.E.

(2018) Nat Commun 9: 2487-2487

Released	2018-07-04
Method	X-RAY DIFFRACTION 1.44 Å
Organisms	Amycolatopsis sp. ATCC 39116
Macromolecule	Cytochrome P450 (protein)
Unique Ligands	HEM, JZ3

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5OMR \| pdb_00005omr	Download File View File

Crystal structure of Amycolatopsis cytochrome P450 GcoA in complex with vanillin.

Mallinson, S.J.B., Johnson, C.W., Neidle, E.L., Beckham, G.T., McGeehan, J.E.

(2018) Nat Commun 9: 2487-2487

Released	2018-07-04
Method	X-RAY DIFFRACTION 1.68 Å
Organisms	Amycolatopsis sp. ATCC 39116
Macromolecule	GcoA (protein)
Unique Ligands	HEM, V55

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5OMS \| pdb_00005oms	Download File View File

Crystal structure of Amycolatopsis cytochrome P450 GcoA in complex with guaethol.

Mallinson, S.J.B., Johnson, C.W., Neidle, E.L., Beckham, G.T., McGeehan, J.E.

(2018) Nat Commun 9: 2487-2487

Released	2018-07-04
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Amycolatopsis sp. ATCC 39116
Macromolecule	Cytochrome P450 (protein)
Unique Ligands	261, HEM

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5OMU \| pdb_00005omu	Download File View File

Crystal structure of Amycolatopsis cytochrome P450 GcoA in complex with syringol

Mallinson, S.J.B., Johnson, C.W., Neidle, E.L., Beckham, G.T., McGeehan, J.E.

(2018) Nat Commun 9: 2487-2487

Released	2018-07-04
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Amycolatopsis sp. ATCC 39116
Macromolecule	Cytochrome P450 (protein)
Unique Ligands	3DM, HEM

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6HQK \| pdb_00006hqk	Download File View File

Crystal structure of GcoA F169A bound to guaiacol

Mallinson, S.J.B., Hinchen, D.J., Allen, M.D., Johnson, C.W., Beckham, G.T., McGeehan, J.E.

(2019) Proc Natl Acad Sci U S A 116: 13970-13976

Released	2019-07-03
Method	X-RAY DIFFRACTION 1.57 Å
Organisms	Amycolatopsis sp. ATCC 39116
Macromolecule	Cytochrome P450 (protein)
Unique Ligands	HEM, JZ3

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6HQL \| pdb_00006hql	Download File View File

Crystal structure of GcoA F169H bound to guaiacol

Mallinson, S.J.B., Hinchen, D.J., Allen, M.D., Johnson, C.W., Beckham, G.T., McGeehan, J.E.

(2019) Proc Natl Acad Sci U S A 116: 13970-13976

Released	2019-07-03
Method	X-RAY DIFFRACTION 1.49 Å
Organisms	Amycolatopsis sp. ATCC 39116
Macromolecule	Cytochrome P450 (protein)
Unique Ligands	HEM, JZ3

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6HQM \| pdb_00006hqm	Download File View File

Crystal structure of GcoA F169I bound to guaiacol

Mallinson, S.J.B., Hinchen, D.J., Allen, M.D., Johnson, C.W., Beckham, G.T., McGeehan, J.E.

(2019) Proc Natl Acad Sci U S A 116: 13970-13976

Released	2019-07-03
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Amycolatopsis sp. ATCC 39116
Macromolecule	Cytochrome P450 (protein)
Unique Ligands	HEM, JZ3

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6HQN \| pdb_00006hqn	Download File View File

Crystal structure of GcoA F169L bound to guaiacol

Mallinson, S.J.B., Hinchen, D.J., Allen, M.D., Johnson, C.W., Beckham, G.T., McGeehan, J.E.

(2019) Proc Natl Acad Sci U S A 116: 13970-13976

Released	2019-07-03
Method	X-RAY DIFFRACTION 1.87 Å
Organisms	Amycolatopsis sp. ATCC 39116
Macromolecule	Cytochrome P450 (protein)
Unique Ligands	HEM, JZ3

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6HQO \| pdb_00006hqo	Download File View File

Crystal structure of GcoA F169S bound to guaiacol

Mallinson, S.J.B., Hinchen, D.J., Allen, M.D., Johnson, C.W., Beckham, G.T., McGeehan, J.E.

(2019) Proc Natl Acad Sci U S A 116: 13970-13976

Released	2019-07-03
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Amycolatopsis sp. ATCC 39116
Macromolecule	Cytochrome P450 (protein)
Unique Ligands	HEM, JZ3

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6HQP \| pdb_00006hqp	Download File View File

Crystal structure of GcoA F169V bound to guaiacol

Mallinson, S.J.B., Hinchen, D.J., Allen, M.D., Johnson, C.W., Beckham, G.T., McGeehan, J.E.

(2019) Proc Natl Acad Sci U S A 116: 13970-13976

Released	2019-07-03
Method	X-RAY DIFFRACTION 1.62 Å
Organisms	Amycolatopsis sp. ATCC 39116
Macromolecule	Cytochrome P450 (protein)
Unique Ligands	HEM, JZ3

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6HQQ \| pdb_00006hqq	Download File View File

Crystal structure of GcoA F169A bound to syringol

Mallinson, S.J.B., Hinchen, D.J., Allen, M.D., Johnson, C.W., Beckham, G.T., McGeehan, J.E.

(2019) Proc Natl Acad Sci U S A 116: 13970-13976

Released	2019-07-03
Method	X-RAY DIFFRACTION 1.66 Å
Organisms	Amycolatopsis sp. ATCC 39116
Macromolecule	Cytochrome P450 (protein)
Unique Ligands	3DM, HEM

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6HQR \| pdb_00006hqr	Download File View File

Crystal structure of GcoA F169H bound to syringol

Mallinson, S.J.B., Hinchen, D.J., Allen, M.D., Johnson, C.W., Beckham, G.T., McGeehan, J.E.

(2019) Proc Natl Acad Sci U S A 116: 13970-13976

Released	2019-07-03
Method	X-RAY DIFFRACTION 1.79 Å
Organisms	Amycolatopsis sp. ATCC 39116
Macromolecule	Cytochrome P450 (protein)
Unique Ligands	3DM, HEM

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6HQS \| pdb_00006hqs	Download File View File

Crystal structure of GcoA F169S bound to syringol

Mallinson, S.J.B., Hinchen, D.J., Allen, M.D., Johnson, C.W., Beckham, G.T., McGeehan, J.E.

(2019) Proc Natl Acad Sci U S A 116: 13970-13976

Released	2019-07-03
Method	X-RAY DIFFRACTION 2.17 Å
Organisms	Amycolatopsis sp. ATCC 39116
Macromolecule	Cytochrome P450 (protein)
Unique Ligands	3DM, HEM

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6HQT \| pdb_00006hqt	Download File View File

Crystal structure of GcoA F169V bound to syringol

Mallinson, S.J.B., Hinchen, D.J., Allen, M.D., Johnson, C.W., Beckham, G.T., McGeehan, J.E.

(2019) Proc Natl Acad Sci U S A 116: 13970-13976

Released	2019-07-03
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Amycolatopsis sp. ATCC 39116
Macromolecule	Cytochrome P450 (protein)
Unique Ligands	3DM, HEM

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6YCH \| pdb_00006ych	Download File View File

Crystal structure of GcoA T296A bound to guaiacol

Mallinson, S.J.B., Hinchen, D.J., Ellis, E.S., DuBois, J.L., Beckham, G.T., McGeehan, J.E.

(2021) JACS Au 1: 252-261

Released	2021-02-17
Method	X-RAY DIFFRACTION 1.88 Å
Organisms	Amycolatopsis sp. ATCC 39116
Macromolecule	Aromatic O-demethylase, cytochrome P450 subunit (protein)
Unique Ligands	EPE, HEM, JZ3

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6YCI \| pdb_00006yci	Download File View File

Crystal structure of GcoA T296G bound to guaiacol

Hinchen, D.J., Mallinson, S.J.B., Allen, M.D., Ellis, E.S., Beckham, G.T., DuBois, J.L., McGeehan, J.E.

(2021) JACS Au 1: 252-261

Released	2021-02-17
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Amycolatopsis sp. ATCC 39116
Macromolecule	Aromatic O-demethylase, cytochrome P450 subunit (protein)
Unique Ligands	HEM, JZ3

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6YCJ \| pdb_00006ycj	Download File View File

Crystal structure of GcoA T296S bound to guaiacol

Mallinson, S.J.B., Hinchen, D.J., Ellis, E.S., Beckham, G.T., DuBois, J.L., McGeehan, J.E.

(2021) JACS Au 1: 252-261

Released	2021-02-17
Method	X-RAY DIFFRACTION 1.64 Å
Organisms	Amycolatopsis sp. ATCC 39116
Macromolecule	Aromatic O-demethylase, cytochrome P450 subunit (protein)
Unique Ligands	HEM, JZ3

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6YCK \| pdb_00006yck	Download File View File

Crystal structure of GcoA T296A bound to p-vanillin

Hinchen, D.J., Mallinson, S.J.B., Allen, M.D., Ellis, E.S., Beckham, G.T., DuBois, J.L., McGeehan, J.E.

(2021) JACS Au 1: 252-261

Released	2021-02-17
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Amycolatopsis sp. ATCC 39116
Macromolecule	Aromatic O-demethylase, cytochrome P450 subunit (protein)
Unique Ligands	EPE, HEM, V55

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6YCL \| pdb_00006ycl	Download File View File

Crystal structure of GcoA T296G bound to p-vanillin

Hinchen, D.J., Mallinson, S.J.B., Allen, M.D., Ellis, E.S., Beckham, G.T., DuBois, J.L., McGeehan, J.E.

(2021) JACS Au 1: 252-261

Released	2021-02-17
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Amycolatopsis sp. ATCC 39116
Macromolecule	Aromatic O-demethylase, cytochrome P450 subunit (protein)
Unique Ligands	HEM, V55

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6YCM \| pdb_00006ycm	Download File View File

Crystal structure of GcoA T296S bound to p-vanillin

Mallinson, S.J.B., Hinchen, D.J., Ellis, E.S., Beckham, G.T., DuBois, J.L., McGeehan, J.E.

(2021) JACS Au 1: 252-261

Released	2021-02-17
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Amycolatopsis sp. ATCC 39116
Macromolecule	Aromatic O-demethylase, cytochrome P450 subunit (protein)
Unique Ligands	HEM, V55

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6YCN \| pdb_00006ycn	Download File View File

Crystal structure of GcoA F169A bound to o-vanillin

Hinchen, D.J., Mallinson, S.J.B., Allen, M.D., Ellis, E.S., Beckham, G.T., DuBois, J.L., McGeehan, J.E.

(2021) JACS Au 1: 252-261

Released	2021-02-17
Method	X-RAY DIFFRACTION 1.83 Å
Organisms	Amycolatopsis sp. ATCC 39116
Macromolecule	Aromatic O-demethylase, cytochrome P450 subunit (protein)
Unique Ligands	HEM, OKE

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6YCO \| pdb_00006yco	Download File View File

Crystal structure of GcoA F169S bound to o-vanillin

Hinchen, D.J., Mallinson, S.J.B., Allen, M.D., Ellis, E.S., Beckham, G.T., DuBois, J.L., McGeehan, J.E.

(2021) JACS Au 1: 252-261

Released	2021-02-17
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Amycolatopsis sp. ATCC 39116
Macromolecule	Aromatic O-demethylase, cytochrome P450 subunit (protein)
Unique Ligands	HEM, OKE

1 to 25 of 27 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

3T9W | pdb_00003t9w

3TA4 | pdb_00003ta4

4G2C | pdb_00004g2c

5NCB | pdb_00005ncb

5OMR | pdb_00005omr

5OMS | pdb_00005oms

5OMU | pdb_00005omu

6HQK | pdb_00006hqk

6HQL | pdb_00006hql

6HQM | pdb_00006hqm

6HQN | pdb_00006hqn

6HQO | pdb_00006hqo

6HQP | pdb_00006hqp

6HQQ | pdb_00006hqq

6HQR | pdb_00006hqr

6HQS | pdb_00006hqs

6HQT | pdb_00006hqt

6YCH | pdb_00006ych

6YCI | pdb_00006yci

6YCJ | pdb_00006ycj

6YCK | pdb_00006yck

6YCL | pdb_00006ycl

6YCM | pdb_00006ycm

6YCN | pdb_00006ycn

6YCO | pdb_00006yco