RCSB PDB: Search

6BO8 \| pdb_00006bo8	Download File View File

Cryo-EM structure of human TRPV6 in nanodiscs

McGoldrick, L.L., Singh, A.K., Saotome, K., Yelshanskaya, M.V., Twomey, E.C., Grassucci, R.A., Sobolevsky, A.I.

(2018) Nature 553: 233-237

Released	2017-12-20
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Homo sapiens
Macromolecule	Transient receptor potential cation channel subfamily V member 6 (protein)

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6BO9 \| pdb_00006bo9	Download File View File

Cryo-EM structure of human TRPV6 in amphipols

McGoldrick, L.L., Singh, A.K., Saotome, K., Yelshanskaya, M.V., Twomey, E.C., Grassucci, R.A., Sobolevsky, A.I.

(2018) Nature 553: 233-237

Released	2017-12-20
Method	ELECTRON MICROSCOPY 4 Å
Organisms	Homo sapiens
Macromolecule	Transient receptor potential cation channel subfamily V member 6 (protein)

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6BOA \| pdb_00006boa	Download File View File

Cryo-EM structure of human TRPV6-R470E in amphipols

McGoldrick, L.L., Singh, A.K., Saotome, K., Yelshanskaya, M.V., Twomey, E.C., Grassucci, R.A., Sobolevsky, A.I.

(2018) Nature 553: 233-237

Released	2017-12-20
Method	ELECTRON MICROSCOPY 4.2 Å
Organisms	Homo sapiens
Macromolecule	Transient receptor potential cation channel subfamily V member 6 (protein)

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6D7S \| pdb_00006d7s	Download File View File

Cryo-EM structure of human TRPV6-Y467A in amphipols

Singh, A.K., Saotome, K., McGoldrick, L.L., Sobolevsky, A.I.

(2018) Nat Commun 9: 2465-2465

Released	2018-07-18
Method	ELECTRON MICROSCOPY 4.34 Å
Organisms	Homo sapiens
Macromolecule	Transient receptor potential cation channel subfamily V member 6 (protein)

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6D7T \| pdb_00006d7t	Download File View File

Cryo-EM structure of human TRPV6-Y467A in complex with 2-Aminoethoxydiphenyl borate (2-APB)

Singh, A.K., Saotome, K., McGoldrick, L.L., Sobolevsky, A.I.

(2018) Nat Commun 9: 2465-2465

Released	2018-07-18
Method	ELECTRON MICROSCOPY 4.44 Å
Organisms	Homo sapiens
Macromolecule	Transient receptor potential cation channel subfamily V member 6 (protein)
Unique Ligands	CA, FZ4

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6E2F \| pdb_00006e2f	Download File View File

Cryo-EM structure of human TRPV6 in complex with Calmodulin

Singh, A.K., McGoldrick, L.L., Sobolevsky, A.I.

(2018) Sci Adv 4: eaau6088-eaau6088

Released	2018-08-22
Method	ELECTRON MICROSCOPY 3.9 Å
Organisms	Homo sapiens
Macromolecule	Calmodulin-1 (protein) Transient receptor potential cation channel subfamily V member 6 (protein)
Unique Ligands	CA

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7K4A \| pdb_00007k4a	Download File View File

Cryo-EM structure of human TRPV6 in the open state

Neuberger, A., Nadezhdin, K.D., Singh, A.K., Sobolevsky, A.I.

(2020) Sci Adv 6:

Released	2020-12-09
Method	ELECTRON MICROSCOPY 3.26 Å
Organisms	Homo sapiens
Macromolecule	Transient receptor potential cation channel subfamily V member 6 (protein)
Unique Ligands	CA, PCW, Y01

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7K4B \| pdb_00007k4b	Download File View File

Cryo-EM structure of human TRPV6 in complex with (4- phenylcyclohexyl)piperazine inhibitor cis-22a

Neuberger, A., Nadezhdin, K.D., Singh, A.K., Sobolevsky, A.I.

(2020) Sci Adv 6:

Released	2020-12-09
Method	ELECTRON MICROSCOPY 3.1 Å
Organisms	Homo sapiens
Macromolecule	Transient receptor potential cation channel subfamily V member 6 (protein)
Unique Ligands	CA, PCW, VUG, Y01

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7K4C \| pdb_00007k4c	Download File View File

Cryo-EM structure of human TRPV6 in complex with (4- phenylcyclohexyl)piperazine inhibitor Br-cis-22a

Neuberger, A., Nadezhdin, K.D., Singh, A.K., Sobolevsky, A.I.

(2020) Sci Adv 6:

Released	2020-12-09
Method	ELECTRON MICROSCOPY 3.78 Å
Organisms	Homo sapiens
Macromolecule	Transient receptor potential cation channel subfamily V member 6 (protein)
Unique Ligands	81F, CA

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7K4D \| pdb_00007k4d	Download File View File

Cryo-EM structure of human TRPV6 in complex with (4- phenylcyclohexyl)piperazine inhibitor 3OG

Neuberger, A., Nadezhdin, K.D., Singh, A.K., Sobolevsky, A.I.

(2020) Sci Adv 6:

Released	2020-12-09
Method	ELECTRON MICROSCOPY 3.66 Å
Organisms	Homo sapiens
Macromolecule	Transient receptor potential cation channel subfamily V member 6 (protein)
Unique Ligands	CA, VUM

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7K4E \| pdb_00007k4e	Download File View File

Cryo-EM structure of human TRPV6 in complex with (4- phenylcyclohexyl)piperazine inhibitor 30

Neuberger, A., Nadezhdin, K.D., Singh, A.K., Sobolevsky, A.I.

(2020) Sci Adv 6:

Released	2020-12-09
Method	ELECTRON MICROSCOPY 4.34 Å
Organisms	Homo sapiens
Macromolecule	Transient receptor potential cation channel subfamily V member 6 (protein)
Unique Ligands	VUJ

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7K4F \| pdb_00007k4f	Download File View File

Cryo-EM structure of human TRPV6 in complex with (4- phenylcyclohexyl)piperazine inhibitor 31

Neuberger, A., Nadezhdin, K.D., Singh, A.K., Sobolevsky, A.I.

(2020) Sci Adv 6:

Released	2020-12-09
Method	ELECTRON MICROSCOPY 3.75 Å
Organisms	Homo sapiens
Macromolecule	Transient receptor potential cation channel subfamily V member 6 (protein)
Unique Ligands	5GK, CA

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7S88 \| pdb_00007s88	Download File View File

Open apo-state cryo-EM structure of human TRPV6 in glyco-diosgenin detergent

Neuberger, A., Nadezhdin, K.D., Sobolevsky, A.I.

(2021) Nat Commun 12: 6284-6284

Released	2021-11-17
Method	ELECTRON MICROSCOPY 2.69 Å
Organisms	Homo sapiens
Macromolecule	Transient receptor potential cation channel subfamily V member 6 (protein)
Unique Ligands	CA, PCW, POV, Y01

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7S89 \| pdb_00007s89	Download File View File

Open apo-state cryo-EM structure of human TRPV6 in cNW11 nanodiscs

Neuberger, A., Nadezhdin, K.D., Sobolevsky, A.I.

(2021) Nat Commun 12: 6284-6284

Released	2021-11-17
Method	ELECTRON MICROSCOPY 2.54 Å
Organisms	Homo sapiens
Macromolecule	Transient receptor potential cation channel subfamily V member 6 (protein)
Unique Ligands	CA, PCW, POV, Y01

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7S8B \| pdb_00007s8b	Download File View File

Cryo-EM structure of human TRPV6 in complex with channel blocker ruthenium red

Nadezhdin, K.D., Neuberger, A., Sobolevsky, A.I.

(2021) Nat Commun 12: 6284-6284

Released	2021-11-17
Method	ELECTRON MICROSCOPY 2.43 Å
Organisms	Homo sapiens
Macromolecule	Transient receptor potential cation channel subfamily V member 6 (protein)
Unique Ligands	CA, PCW, POV, R2R, Y01

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7S8C \| pdb_00007s8c	Download File View File

Cryo-EM structure of human TRPV6 in complex with inhibitor econazole

Neuberger, A., Nadezhdin, K.D., Sobolevsky, A.I.

(2021) Nat Commun 12: 6284-6284

Released	2021-11-17
Method	ELECTRON MICROSCOPY 2.85 Å
Organisms	Homo sapiens
Macromolecule	Transient receptor potential cation channel subfamily V member 6 (protein)
Unique Ligands	CA, CL, ECL, POV, Y01

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8FOA \| pdb_00008foa	Download File View File

Cryo-EM structure of human TRPV6 in complex with the natural phytoestrogen genistein

Neuberger, A., Yelshanskaya, M.V., Nadezhdin, K.D., Sobolevsky, A.I.

(2023) Nat Commun 14: 2659-2659

Released	2023-05-24
Method	ELECTRON MICROSCOPY 2.66 Å
Organisms	Homo sapiens
Macromolecule	Transient receptor potential cation channel subfamily V member 6 (protein)
Unique Ligands	CA, GEN, POV, Y01, ZN

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8FOB \| pdb_00008fob	Download File View File

Cryo-EM structure of human TRPV6 in the open state

Neuberger, A., Yelshanskaya, M.V., Nadezhdin, K.D., Sobolevsky, A.I.

(2023) Nat Commun 14: 2659-2659

Released	2023-05-24
Method	ELECTRON MICROSCOPY 2.71 Å
Organisms	Homo sapiens
Macromolecule	Transient receptor potential cation channel subfamily V member 6 (protein)
Unique Ligands	CA, PCW, POV, Y01

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8SP8 \| pdb_00008sp8	Download File View File

Human TRP channel TRPV6 in cNW30 nanodiscs inhibited by tetrahydrocannabivarin (THCV)

Neuberger, A., Yelshanskaya, M.V., Nadezhdin, K.D., Sobolevsky, A.I.

(2023) Nat Commun 14: 4630-4630

Released	2023-08-23
Method	ELECTRON MICROSCOPY 2.79 Å
Organisms	Homo sapiens
Macromolecule	Transient receptor potential cation channel subfamily V member 6 (protein)
Unique Ligands	CA, CL, I8E, POV, Y01

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9CUH \| pdb_00009cuh	Download File View File

Structure of human full-length ancestral TRPV6 channel in apo open state

Neuberger, A., Nadezhdin, K.D., Sobolevsky, A.I.

(2025) Structure 33: 91-103.e5

Released	2024-11-13
Method	ELECTRON MICROSCOPY 3.03 Å
Organisms	Homo sapiens
Macromolecule	Transient receptor potential cation channel subfamily V member 6 (protein)
Unique Ligands	CA, PCW, POV, Y01

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9CUI \| pdb_00009cui	Download File View File

Structure of human full-length ancestral TRPV6 channel in Calmodulin-bound state

Neuberger, A., Nadezhdin, K.D., Sobolevsky, A.I.

(2025) Structure 33: 91-103.e5

Released	2024-11-13
Method	ELECTRON MICROSCOPY 3.42 Å
Organisms	Homo sapiens
Macromolecule	Calmodulin-1 (protein) Transient receptor potential cation channel subfamily V member 6 (protein)
Unique Ligands	CA, CLR, PCW, Y01

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9CUJ \| pdb_00009cuj	Download File View File

Structure of human full-length derived TRPV6 channel in apo open state

Neuberger, A., Nadezhdin, K.D., Sobolevsky, A.I.

(2025) Structure 33: 91-103.e5

Released	2024-11-13
Method	ELECTRON MICROSCOPY 2.78 Å
Organisms	Homo sapiens
Macromolecule	Transient receptor potential cation channel subfamily V member 6 (protein)
Unique Ligands	CA, PCW, POV, Y01

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9CUK \| pdb_00009cuk	Download File View File

Structure of human full-length derived TRPV6 channel in Calmodulin-bound state

Neuberger, A., Nadezhdin, K.D., Sobolevsky, A.I.

(2025) Structure 33: 91-103.e5

Released	2024-11-13
Method	ELECTRON MICROSCOPY 3.26 Å
Organisms	Homo sapiens
Macromolecule	Calmodulin-1 (protein) Transient receptor potential cation channel subfamily V member 6 (protein)
Unique Ligands	CA, CLR, PCW, Y01

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Membrane Protein Annotation

Symmetry Type

6BO8 | pdb_00006bo8

6BO9 | pdb_00006bo9

6BOA | pdb_00006boa

6D7S | pdb_00006d7s

6D7T | pdb_00006d7t

6E2F | pdb_00006e2f

7K4A | pdb_00007k4a

7K4B | pdb_00007k4b

7K4C | pdb_00007k4c

7K4D | pdb_00007k4d

7K4E | pdb_00007k4e

7K4F | pdb_00007k4f

7S88 | pdb_00007s88

7S89 | pdb_00007s89

7S8B | pdb_00007s8b

7S8C | pdb_00007s8c

8FOA | pdb_00008foa

8FOB | pdb_00008fob

8SP8 | pdb_00008sp8

9CUH | pdb_00009cuh

9CUI | pdb_00009cui

9CUJ | pdb_00009cuj

9CUK | pdb_00009cuk