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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Gene Name = "BM922_001344"

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Search Summary

This query matches 52 Structures.

Refinements

Structure Determination Methodology

experimental (52)

Scientific Name of Source Organism

	Severe acute respiratory syndrome coronavirus 2 (16)
	Homo sapiens (13)
	Severe acute respiratory syndrome coronavirus (6)
	Tequatrovirus T4 (4)
	Pipistrellus bat coronavirus HKU5 (2)
	Severe acute respiratory syndrome-related coronavirus (2)
	Aedes aegypti (1)
	Bat SARS-like coronavirus WIV1 (1)
	Bat coronavirus BM48-31/BGR/2008 (1)
	Bos taurus (1)

More...

Taxonomy

	Riboviria (33)
	Eukaryota (19)
	Duplodnaviria (4)
	Bacteria (2)

Experimental Method

	ELECTRON MICROSCOPY (40)
	X-RAY DIFFRACTION (12)

Polymer Entity Type

Protein (52)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (2)
	1.5 - 2.0 (4)
	2.0 - 2.5 (13)
	2.5 - 3.0 (20)
	3.0 - 3.5 (11)
	3.5 - 4.0 (1)

Release Date

	2000 - 2004 (1)
	2005 - 2009 (2)
	2010 - 2014 (4)
	2015 - 2019 (4)
	2020 - 2024 (30)
	2025 - 2029 (11)

Enzyme Classification Name

	Hydrolases (1)
	Oxidoreductases (1)

Membrane Protein Annotation

	PDBTM (7)
	MemProtMD (6)
	mpstruc (2)
	OPM (1)

Symmetry Type

	Cyclic (43)
	Asymmetric (9)
	Helical (1)

SCOP Classification

	All beta proteins (4)
	All alpha proteins (3)
	Artifacts (1)
	Alpha and beta proteins (a/b) (1)
	Small proteins (1)

AllSelected

1 to 25 of 52 Structures

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1IGZ \| pdb_00001igz	Download File View File

Crystal Structure of Linoleic acid Bound in the Cyclooxygenase Channel of Prostaglandin Endoperoxide H Synthase-1.

Malkowski, M.G., Thuresson, E.D., Smith, W.L., Garavito, R.M.

(2001) J Biological Chem 276: 37547-37555

Released	2001-12-12
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Ovis aries
Macromolecule	Prostaglandin Endoperoxide H Synthase-1 (protein)
Unique Ligands	BGC, BOG, COH, EIC
Unique branched monosaccharides	BMA, MAN, NAG, NDG

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2EVL \| pdb_00002evl	Download File View File

Crystal structure of human Glycolipid Transfer Protein complexed with 18:2 Galactosylceramide

Malinina, L., Malakhova, M.L., Kanack, A.T., Abagyan, R., Brown, R.E., Patel, D.J.

(2006) PLoS Biol 4: e362-e362

Released	2006-11-14
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Glycolipid transfer protein (protein)
Unique Ligands	EIC, GAL, LNK, OCT, SPH

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2Q9S \| pdb_00002q9s	Download File View File

Linoleic Acid Bound to Fatty Acid Binding Protein 4

Gillilan, R.E., Ayers, S.D., Noy, N.

(2007) J Mol Biology 372: 1246-1260

Released	2007-11-06
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Mus musculus
Macromolecule	Fatty acid-binding protein (protein)
Unique Ligands	EIC, SO4

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4DQ4 \| pdb_00004dq4	Download File View File

Bovine beta-lactoglobulin complex with linoleic acid

Loch, J.I., Lewinski, K.

(2013) Int J Biol Macromol 57: 226-231

Released	2012-02-29
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Bos taurus
Macromolecule	Beta-lactoglobulin (protein)
Unique Ligands	EIC, EOH, GOL

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4IA6 \| pdb_00004ia6	Download File View File

Hydratase from lactobacillus acidophilus in a ligand bound form (LA LAH)

Khoshnevis, S., Neumann, P., Ficner, R.

(2013) Acta Crystallogr D Biol Crystallogr 69: 648-657

Released	2013-03-27
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Lactobacillus acidophilus NCFM
Macromolecule	Myosin-crossreactive antigen (protein)
Unique Ligands	EIC, GOL, K, MES, MPD, MRD, NA, NO3, PO4, TRS

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4LKT \| pdb_00004lkt	Download File View File

Crystal Structure of Human Epidermal Fatty Acid Binding Protein (FABP5) in Complex with Linoleic Acid

Armstrong, E.H., Ortlund, E.A.

(2014) J Biological Chem 289: 14941-14954

Released	2014-03-26
Method	X-RAY DIFFRACTION 2.57 Å
Organisms	Homo sapiens
Macromolecule	Fatty acid-binding protein, epidermal (protein)
Unique Ligands	CIT, CL, EIC, GOL, NH4, SO4, TAR

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4NYQ \| pdb_00004nyq	Download File View File

In-vivo crystallisation (midguts of a viviparous cockroach) and structure at 1.2 A resolution of a glycosylated, lipid-binding, lipocalin-like protein

Coussens, N.P., Gallat, F.-X., Ramaswamy, S., Yagi, K., Tobe, S.S., Stay, B., Chavas, L.M.G.

(2016) IUCrJ 3: 282-293

Released	2014-01-01
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Diploptera punctata
Macromolecule	Milk protein (protein)
Unique Ligands	EIC, GOL, NAG, OLA
Unique branched monosaccharides	BMA, NAG

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5BVS \| pdb_00005bvs	Download File View File

Linoleate-bound pFABP4

Lee, J.H., Lee, C.W., Do, H.

(2015) Biochem Biophys Res Commun 465: 12-18

Released	2015-08-05
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Pygoscelis papua
Macromolecule	Fatty acid-binding protein (protein)
Unique Ligands	EIC

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5Z0B \| pdb_00005z0b	Download File View File

Crystal structure of plasma-derived human serum albumin

Park, J., Kim, M.-S., Shin, D.H.

To be published

Released	2018-12-19
Method	X-RAY DIFFRACTION 2.17 Å
Organisms	Homo sapiens
Macromolecule	Serum albumin (protein)
Unique Ligands	1PE, EIC, OCA, PEG, PG4, PGE, PLM, SO4, TRP

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6CNG \| pdb_00006cng	Download File View File

The X-ray crystal structure of the Streptococcus pneumoniae Fatty Acid Kinase (Fak) B3 protein loaded with linoleic acid to 1.47 Angstrom resolution

Cuypers, M.G., Subramanian, C., White, S.W., Rock, C.O.

To be published

Released	2019-07-03
Method	X-RAY DIFFRACTION 1.47 Å
Organisms	Streptococcus pneumoniae R6
Macromolecule	Fatty Acid Kinase (Fak) B3 protein (protein)
Unique Ligands	ACT, EIC, GOL, NA

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6OGH \| pdb_00006ogh	Download File View File

Structure of Aedes aegypti OBP22 in the complex with linoleic acid

Jones, D.N., Wang, J.

(2020) Sci Rep 10: 3300-3300

Released	2019-04-24
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Aedes aegypti
Macromolecule	AAEL005772-PA (protein)
Unique Ligands	CD, CO, EIC, EPE

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6ZB4 \| pdb_00006zb4	Download File View File

SARS CoV-2 Spike protein, Closed conformation, C1 symmetry

Toelzer, C., Gupta, K., Yadav, S.K.N., Burucu, U., Schaffitzel, C., Berger, I.

(2020) Science 370: 725-730

Released	2020-09-30
Method	ELECTRON MICROSCOPY 3.03 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Spike glycoprotein (protein)
Unique Ligands	EIC, NAG
Unique branched monosaccharides	NAG

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6ZB5 \| pdb_00006zb5	Download File View File

SARS CoV-2 Spike protein, Closed conformation, C3 symmetry

Toelzer, C., Gupta, K., Yadav, S.K.N., Burucu, U., Schaffitzel, C., Berger, I.

(2020) Science 370: 725-730

Released	2020-09-30
Method	ELECTRON MICROSCOPY 2.85 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Spike glycoprotein (protein)
Unique Ligands	EIC, NAG
Unique branched monosaccharides	NAG

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6ZP2 \| pdb_00006zp2	Download File View File

Structure of SARS-CoV-2 Spike Protein Trimer (K986P, V987P, single Arg S1/S2 cleavage site) in Locked State

Xiong, X., Qu, K., Scheres, S.H.W., Briggs, J.A.G.

(2020) Nat Struct Mol Biol 27: 934-941

Released	2020-07-22
Method	ELECTRON MICROSCOPY 3.1 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Spike glycoprotein (protein)
Unique Ligands	BLA, EIC, NAG
Unique branched monosaccharides	NAG

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7CN8 \| pdb_00007cn8	Download File View File

Cryo-EM structure of PCoV_GX spike glycoprotein

Wang, X., Yu, J., Zhang, S., Qiao, S., Zeng, J., Tian, L.

(2021) Nat Commun 12: 1607-1607

Released	2021-03-03
Method	ELECTRON MICROSCOPY 2.5 Å
Organisms	Pangolin coronavirus
Macromolecule	Glycoprotein (protein)
Unique Ligands	EIC, NAG
Unique branched monosaccharides	NAG

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7DWY \| pdb_00007dwy	Download File View File

S protein of SARS-CoV-2 in the locked conformation

Yan, R.H., Zhang, Y.Y., Li, Y.N., Ye, F.F., Guo, Y.Y., Xia, L., Zhong, X.Y., Chi, X.M., Zhou, Q.

(2021) Cell Res 31: 717-719

Released	2021-03-31
Method	ELECTRON MICROSCOPY 2.7 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Spike glycoprotein (protein)
Unique Ligands	EIC, NAG
Unique branched monosaccharides	NAG

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7JJI \| pdb_00007jji	Download File View File

Structure of SARS-CoV-2 3Q-2P full-length prefusion spike trimer (C3 symmetry)

Bangaru, S., Turner, H.L., Ozorowski, G., Antanasijevic, A., Ward, A.B.

(2020) Science 370: 1089-1094

Released	2020-08-26
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Spike glycoprotein (protein)
Unique Ligands	EIC, NAG, VCG
Unique branched monosaccharides	NAG

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7OD3 \| pdb_00007od3	Download File View File

SARS CoV-2 Spike protein, Bristol UK Deletion variant, Closed conformation, C3 symmetry

Toelzer, C., Gupta, K., Yadav, S.K.N., Borucu, U., Schaffitzel, C., Berger, I.

(2022) Nat Commun 13: 222-222

Released	2022-01-26
Method	ELECTRON MICROSCOPY 2.8 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Spike glycoprotein (protein)
Unique Ligands	EIC, NAG

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7ODL \| pdb_00007odl	Download File View File

SARS CoV-2 Spike protein, Bristol UK Deletion variant, Closed conformation, C1 symmetry

Toelzer, C., Gupta, K., Yadav, S.K.N., Borucu, U., Schaffitzel, C., Berger, I.

(2022) Nat Commun 13: 222-222

Released	2022-01-26
Method	ELECTRON MICROSCOPY 3.03 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Spike glycoprotein (protein)
Unique Ligands	EIC, NAG

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7QUR \| pdb_00007qur	Download File View File

SARS-CoV-2 Spike with ethylbenzamide-tri-iodo Siallyllactose, C3 symmetry

Naismith, J.H., Yang, Y., Liu, J.W.

(2022) Science 377: eabm3125-eabm3125

Released	2022-06-01
Method	ELECTRON MICROSCOPY 2.27 Å
Organisms	Severe acute respiratory syndrome coronavirus 2 Tequatrovirus T4
Macromolecule	Spike glycoprotein,Fibritin (protein)
Unique Ligands	EIC, GE9, NAG, SIA
Unique branched monosaccharides	FUC, NAG

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7QUS \| pdb_00007qus	Download File View File

SARS-CoV-2 Spike, C3 symmetry

Naismith, J.H., Yang, Y., Liu, J.W.

(2022) Science 377: eabm3125-eabm3125

Released	2022-06-08
Method	ELECTRON MICROSCOPY 2.39 Å
Organisms	Severe acute respiratory syndrome coronavirus 2 Tequatrovirus T4
Macromolecule	Spike glycoprotein,Fibritin (protein)
Unique Ligands	EIC, NAG
Unique branched monosaccharides	FUC, NAG

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7WDJ \| pdb_00007wdj	Download File View File

The 0.90 angstrom X-ray structure of the human heart fatty acid-binding protein complexed with linoleic acid

Sugiyama, S., Matsuoka, S., Tsuchikawa, H., Sonoyama, M., Inoue, Y., Hayashi, F., Murata, M.

To be published

Released	2022-12-21
Method	X-RAY DIFFRACTION 0.9 Å
Organisms	Homo sapiens
Macromolecule	Fatty acid-binding protein, heart (protein)
Unique Ligands	EIC, P6G

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7WGV \| pdb_00007wgv	Download File View File

SARS-CoV-2 spike glycoprotein trimer in closed state

Zhu, Y., Tai, L., Yin, G., Sun, F.

(2022) Cell Discov 8: 53

Released	2023-01-04
Method	ELECTRON MICROSCOPY 3.2 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Spike glycoprotein (protein)
Unique Ligands	BLR, EIC, NAG
Unique branched monosaccharides	NAG

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7X08 \| pdb_00007x08	Download File View File

S protein of SARS-CoV-2 in complex with 2G1

Guo, Y.Y., Zhang, Y.Y., Zhou, Q.

(2022) Cell Discov 8: 16-16

Released	2022-03-09
Method	ELECTRON MICROSCOPY 2.7 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus
Macromolecule	Spike glycoprotein (protein) heavy chain of 2G1 (protein) light chain of 2G1 (protein)
Unique Ligands	EIC, NAG
Unique branched monosaccharides	NAG

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7XTZ \| pdb_00007xtz	Download File View File

Structure of SARS-CoV-2 Spike Protein with Engineered x3 Disulfide (x3(D427C, V987C) and single Arg S1/S2 cleavage site), Locked-1 Conformation

Qu, K., Chen, Q., Ciazynska, K.A., Liu, B., Zhang, X., Wang, J., He, Y., Guan, J., He, J., Liu, T., Zhang, X., Carter, A.P., Xiong, X., Briggs, J.A.G.

(2022) PLoS Pathog 18: e1010583-e1010583

Released	2022-07-20
Method	ELECTRON MICROSCOPY 2.8 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Spike glycoprotein (protein)
Unique Ligands	BLA, EIC, NAG
Unique branched monosaccharides	NAG

1 to 25 of 52 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1IGZ | pdb_00001igz

2EVL | pdb_00002evl

2Q9S | pdb_00002q9s

4DQ4 | pdb_00004dq4

4IA6 | pdb_00004ia6

4LKT | pdb_00004lkt

4NYQ | pdb_00004nyq

5BVS | pdb_00005bvs

5Z0B | pdb_00005z0b

6CNG | pdb_00006cng

6OGH | pdb_00006ogh

6ZB4 | pdb_00006zb4

6ZB5 | pdb_00006zb5

6ZP2 | pdb_00006zp2

7CN8 | pdb_00007cn8

7DWY | pdb_00007dwy

7JJI | pdb_00007jji

7OD3 | pdb_00007od3

7ODL | pdb_00007odl

7QUR | pdb_00007qur

7QUS | pdb_00007qus

7WDJ | pdb_00007wdj

7WGV | pdb_00007wgv

7X08 | pdb_00007x08

7XTZ | pdb_00007xtz