RCSB PDB: Search

1M3U \| pdb_00001m3u	Download File View File

Crystal Structure of Ketopantoate Hydroxymethyltransferase complexed the Product Ketopantoate

von Delft, F., Inoue, T., Saldanha, S.A., Ottenhof, H.H., Dhanaraj, V., Witty, M., Abell, C., Smith, A.G., Blundell, T.L.

(2003) Structure 11: 985-996

Released	2003-07-22
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Escherichia coli
Macromolecule	3-methyl-2-oxobutanoate hydroxymethyltransferase (protein)
Unique Ligands	KPL, MG

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1PPY \| pdb_00001ppy	Download File View File

Native precursor of pyruvoyl dependent Aspartate decarboxylase

Schmitzberger, F., Kilkenny, M.L., Lobley, C.M.C., Webb, M.E., Vinkovic, M., Matak-Vinkovic, D., Witty, M., Chirgadze, D.Y., Smith, A.G., Abell, C., Blundell, T.L.

(2003) EMBO J 22: 6193-6204

Released	2003-11-18
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Escherichia coli
Macromolecule	Aspartate 1-decarboxylase precursor (protein)
Unique Ligands	SO4

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1PQE \| pdb_00001pqe	Download File View File

S25A mutant of pyruvoyl dependent aspartate decarboxylase

Schmitzberger, F., Kilkenny, M.L., Lobley, C.M.C., Webb, M.E., Vinkovic, M., Matak-Vinkovic, D., Witty, M., Chirgadze, D.Y., Smith, A.G., Abell, C., Blundell, T.L.

(2003) EMBO J 22: 6193-6204

Released	2003-11-18
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Escherichia coli
Macromolecule	Aspartate 1-decarboxylase (protein)

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1PQF \| pdb_00001pqf	Download File View File

Glycine 24 to Serine mutation of aspartate decarboxylase

Schmitzberger, F., Kilkenny, M.L., Lobley, C.M.C., Webb, M.E., Vinkovic, M., Matak-Vinkovic, D., Witty, M., Chirgadze, D.Y., Smith, A.G., Abell, C., Blundell, T.L.

(2003) EMBO J 22: 6193-6204

Released	2003-11-18
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli
Macromolecule	Aspartate 1-decarboxylase (protein)
Unique Ligands	SO4

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1PQH \| pdb_00001pqh	Download File View File

Serine 25 to Threonine mutation of aspartate decarboxylase

Schmitzberger, F., Kilkenny, M.L., Lobley, C.M.C., Webb, M.E., Vinkovic, M., Matak-Vinkovic, D., Witty, M., Chirgadze, D.Y., Smith, A.G., Abell, C., Blundell, T.L.

(2003) EMBO J 22: 6193-6204

Released	2003-11-18
Method	X-RAY DIFFRACTION 1.29 Å
Organisms	Escherichia coli
Macromolecule	Aspartate 1-decarboxylase (protein)
Unique Ligands	MLA, NA

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1PT0 \| pdb_00001pt0	Download File View File

Unprocessed Pyruvoyl Dependent Aspartate Decarboxylase with an Alanine insertion at position 26

Schmitzberger, F., Kilkenny, M.L., Lobley, C.M.C., Webb, M.E., Vinkovic, M., Matak-Vinkovic, D., Witty, M., Chirgadze, D.Y., Smith, A.G., Abell, C., Blundell, T.L.

(2003) EMBO J 22: 6193-6204

Released	2003-11-11
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli
Macromolecule	Aspartate 1-decarboxylase (protein)
Unique Ligands	SO4

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1PT1 \| pdb_00001pt1	Download File View File

Unprocessed Pyruvoyl Dependent Aspartate Decarboxylase with Histidine 11 Mutated to Alanine

Schmitzberger, F., Kilkenny, M.L., Lobley, C.M.C., Webb, M.E., Vinkovic, M., Matak-Vinkovic, D., Witty, M., Chirgadze, D.Y., Smith, A.G., Abell, C., Blundell, T.L.

(2003) EMBO J 22: 6193-6204

Released	2003-11-11
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Escherichia coli
Macromolecule	Aspartate 1-decarboxylase (protein)
Unique Ligands	SO4

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1PYQ \| pdb_00001pyq	Download File View File

Unprocessed Aspartate Decarboxylase Mutant, with Alanine inserted at position 24

Schmitzberger, F., Kilkenny, M.L., Lobley, C.M.C., Webb, M.E., Vinkovic, M., Matak-Vinkovic, D., Witty, M., Chirgadze, D.Y., Smith, A.G., Abell, C., Blundell, T.L.

(2003) EMBO J 22: 6193-6204

Released	2003-11-18
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Escherichia coli
Macromolecule	Aspartate 1-decarboxylase (protein)
Unique Ligands	SO4

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1PYU \| pdb_00001pyu	Download File View File

Processed Aspartate Decarboxylase Mutant with Ser25 mutated to Cys

Schmitzberger, F., Kilkenny, M.L., Lobley, C.M.C., Webb, M.E., Vinkovic, M., Matak-Vinkovic, D., Witty, M., Chirgadze, D.Y., Smith, A.G., Abell, C., Blundell, T.L.

(2003) EMBO J 22: 6193-6204

Released	2003-11-18
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Escherichia coli
Macromolecule	Aspartate 1-decarboxylase alfa chain (protein) Aspartate 1-decarboxylase beta chain (protein)
Unique Ligands	SO4

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2C45 \| pdb_00002c45	Download File View File

NATIVE PRECURSOR OF PYRUVOYL DEPENDENT ASPARTATE DECARBOXYLASE

Gopalan, G., Chopra, S., Ranganathan, A., Swaminathan, K.

(2006) Proteins 65: 796-802

Released	2007-03-06
Method	X-RAY DIFFRACTION 2.99 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Aspartate 1-decarboxylase (protein)

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2OAN \| pdb_00002oan	Download File View File

Structure of oxidized beta-actin

Schmitzberger, F., Lassing, I., Nordlund, P., Lindberg, U.

(2007) J Mol Biology 370: 331-348

Released	2007-05-01
Method	X-RAY DIFFRACTION 2.606 Å
Organisms	Bos taurus
Macromolecule	Actin, cytoplasmic 1 (protein)
Unique Ligands	ATP, CA, SO4

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3FHD \| pdb_00003fhd	Download File View File

Crystal structure of the Shutoff and Exonuclease Protein from Kaposis Sarcoma Associated Herpesvirus

Dahlroth, S.L., Gurmu, D., Schmitzberger, F., Haas, J., Erlandsen, H., Nordlund, P.

(2009) FEBS J 276: 6636-6645

Released	2009-11-24
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Human herpesvirus 8 type M
Macromolecule	ORF 37 (protein)
Unique Ligands	MG, SO4

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3ZXU \| pdb_00003zxu	Download File View File

Crystal structure of the Ctf19-Mcm21 kinetochore heterodimer from yeast

Schmitzberger, F., Harrison, S.C.

(2012) EMBO Rep 13: 216

Released	2012-03-14
Method	X-RAY DIFFRACTION 3.7 Å
Organisms	Kluyveromyces lactis NRRL Y-1140
Macromolecule	CTF19 (protein) MCM21 (protein)
Unique Ligands	CA

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5MU3 \| pdb_00005mu3	Download File View File

Crystal structure of Ctf19-Mcm21 kinetochore assembly bound with Ctf19-Mcm21 binding motif of central kinetochore subunit Okp1

Schmitzberger, F.

(2017) EMBO J 36: 3458-3482

Released	2017-11-01
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Kluyveromyces lactis NRRL Y-1140
Macromolecule	Central kinetochore subunit CTF19 (protein) Central kinetochore subunit MCM21 (protein) Central kinetochore subunit Okp1 (protein)

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7RZD \| pdb_00007rzd	Download File View File

CRYSTAL STRUCTURE OF HLA-B*07:02 IN COMPLEX WITH MLL(747-755) PEPTIDE

Patskovsky, Y., Patskovska, L., Nyovanie, S., Natarajan, A., Joshi, B., Morin, B., Brittsan, C., Huber, O., Gordon, S., Michelet, X., Schmitzberger, F., Stein, R., Findeis, M., Hurwitz, A., Van Dijk, M., Buell, J., Underwood, D., Krogsgaard, M.

(2023) Nat Commun 14: 3763-3763

Released	2022-11-02
Method	X-RAY DIFFRACTION 1.82 Å
Organisms	Homo sapiens
Macromolecule	Beta-2-microglobulin (protein) HLA class I histocompatibility antigen, B-7 alpha chain (protein) MLL cleavage product N320 peptide (protein)
Unique Ligands	CL, GOL, NA

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7RZJ \| pdb_00007rzj	Download File View File

CRYSTAL STRUCTURE OF HLA-B*07:02 IN COMPLEX WITH MLL(747-755) PHOSPHOPEPTIDE

Patskovsky, Y., Patskovska, L., Nyovanie, S., Natarajan, A., Joshi, B., Morin, B., Brittsan, C., Huber, O., Gordon, S., Michelet, X., Schmitzberger, F., Stein, R., Findeis, M., Hurwitz, A., Van Dijk, M., Buell, J., Underwood, D., Krogsgaard, M.

(2023) Nat Commun 14: 3763-3763

Released	2022-11-02
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Beta-2-microglobulin (protein) HLA class I histocompatibility antigen, B-7 alpha chain (protein) MLL cleavage product N320 phosphopeptide (protein)
Unique branched monosaccharides	FRU, GLC

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7S79 \| pdb_00007s79	Download File View File

STRUCTURE OF HLA-B*07:02 IN COMPLEX WITH SYNTHETIC PHOSPHONO-MLL PEPTIDE ANALOG

Patskovska, L., Patskovsky, Y., Nyovanie, S., Natarajan, A., Joshi, B., Morin, B., Brittsan, C., Huber, O., Gordon, S., Michelet, X., Schmitzberger, F., Stein, R., Findeis, M., Hurwitz, A., Van Dijk, M., Buell, J., Underwood, D., Krogsgaard, M.

(2023) Nat Commun 14: 3763-3763

Released	2022-11-02
Method	X-RAY DIFFRACTION 1.53 Å
Organisms	Homo sapiens
Macromolecule	Beta-2-microglobulin (protein) HLA class I histocompatibility antigen, B-7 alpha chain (protein) MLL cleavage product N320 (protein)
Unique Ligands	GOL, NA

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7S7D \| pdb_00007s7d	Download File View File

STRUCTURE OF HLA-B*07:02 IN COMPLEX WITH SYNTHETIC SULFO-MLL PEPTIDE ANALOG

Patskovska, L., Patskovsky, Y., Nyovanie, S., Natarajan, A., Joshi, B., Morin, B., Brittsan, C., Huber, O., Gordon, S., Michelet, X., Schmitzberger, F., Stein, R., Findeis, M., Hurwitz, A., Van Dijk, M., Buell, J., Underwood, D., Krogsgaard, M.

(2023) Nat Commun 14: 3763-3763

Released	2022-11-02
Method	X-RAY DIFFRACTION 1.56 Å
Organisms	Homo sapiens
Macromolecule	Beta-2-microglobulin (protein) HLA class I histocompatibility antigen, B-7 alpha chain (protein) MLL cleavage product N320 (protein)
Unique Ligands	GOL

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7S7E \| pdb_00007s7e	Download File View File

STRUCTURE OF HLA-B*07:02 IN COMPLEX WITH DOT1L(998-1006) PEPTIDE

Patskovska, L., Patskovsky, Y., Nyovanie, S., Natarajan, A., Joshi, B., Morin, B., Brittsan, C., Huber, O., Gordon, S., Michelet, X., Schmitzberger, F., Stein, R., Findeis, M., Hurwitz, A., Van Dijk, M., Buell, J., Underwood, D., Krogsgaard, M.

(2023) Nat Commun 14: 3763-3763

Released	2022-11-02
Method	X-RAY DIFFRACTION 2.04 Å
Organisms	Homo sapiens
Macromolecule	Beta-2-microglobulin (protein) HLA class I histocompatibility antigen, B-7 alpha chain (protein) Histone-lysine N-methyltransferase, H3 lysine-79 specific (protein)
Unique Ligands	NA
Unique branched monosaccharides	FRU, GLC

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7S7F \| pdb_00007s7f	Download File View File

STRUCTURE OF HLA-B*07:02 IN COMPLEX WITH DOT1L(998-1006) PHOSPHOPEPTIDE

Patskovska, L., Patskovsky, Y., Nyovanie, S., Natarajan, A., Joshi, B., Morin, B., Brittsan, C., Huber, O., Gordon, S., Michelet, X., Schmitzberger, F., Stein, R., Findeis, M., Hurwitz, A., Van Dijk, M., Buell, J., Underwood, D., Krogsgaard, M.

(2023) Nat Commun 14: 3763-3763

Released	2022-11-02
Method	X-RAY DIFFRACTION 1.88 Å
Organisms	Homo sapiens
Macromolecule	Beta-2-microglobulin (protein) HLA class I histocompatibility antigen, B-7 alpha chain (protein) Histone-lysine N-methyltransferase, H3 lysine-79 specific (protein)
Unique branched monosaccharides	FRU, GLC

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7S8A \| pdb_00007s8a	Download File View File

STRUCTURE OF HLA-B*07:02 IN COMPLEX WITH MLL(747-755) PHOSPHOPEPTIDE, CUBIC CRYSTAL FORM

Patskovska, L., Patskovsky, Y., Nyovanie, S., Natarajan, A., Joshi, B., Morin, B., Brittsan, C., Huber, O., Gordon, S., Michelet, X., Schmitzberger, F., Stein, R., Findeis, M., Hurwitz, A., Van Dijk, M., Buell, J., Underwood, D., Krogsgaard, M.

(2023) Nat Commun 14: 3763-3763

Released	2022-11-02
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Beta-2-microglobulin (protein) HLA class I histocompatibility antigen, B-7 alpha chain (protein) MLL cleavage product N320 phosphopeptide (protein)
Unique Ligands	12P, 1PE, ACT, PE8, PEG, PG4, PGE

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7S8E \| pdb_00007s8e	Download File View File

STRUCTURE OF HLA-B*07:02 IN COMPLEX WITH MLL(747-755) PHOSPHOPEPTIDE AND BOUND GLYCEROL

Patskovsky, Y., Nyovanie, S., Patskovska, L., Natarajan, A., Joshi, B., Morin, B., Brittsan, C., Huber, O., Gordon, S., Michelet, X., Schmitzberger, F., Stein, R., Findeis, M., Hurwitz, A., Van Dijk, M., Buell, J., Underwood, D., Krogsgaard, M.

(2023) Nat Commun 14: 3763-3763

Released	2022-11-02
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	Beta-2-microglobulin (protein) HLA class I histocompatibility antigen, B-7 alpha chain (protein) MLL cleavage product N320 phosphopeptide (protein)
Unique Ligands	GOL

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7S8F \| pdb_00007s8f	Download File View File

STRUCTURE OF HLA-B*07:02 IN COMPLEX WITH MLL(747-755) PEPTIDE AND BOUND GLYCEROL

Patskovsky, Y., Nyovanie, S., Patskovska, L., Natarajan, A., Joshi, B., Morin, B., Brittsan, C., Huber, O., Gordon, S., Michelet, X., Schmitzberger, F., Stein, R., Findeis, M., Hurwitz, A., Van Dijk, M., Buell, J., Underwood, D., Krogsgaard, M.

(2023) Nat Commun 14: 3763-3763

Released	2022-11-02
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Beta-2-microglobulin (protein) HLA class I histocompatibility antigen, B-7 alpha chain (protein) MLL cleavage product N320 peptide (protein)
Unique Ligands	GOL

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7S8I \| pdb_00007s8i	Download File View File

PHOSPHOPEPTIDE-SPECIFIC LC13 TCR, MONOCLINIC CRYSTAL FORM

Patskovsky, Y., Nyovanie, S., Patskovska, L., Natarajan, A., Joshi, B., Morin, B., Brittsan, C., Huber, O., Gordon, S., Michelet, X., Schmitzberger, F., Stein, R., Findeis, M., Hurwitz, A., Van Dijk, M., Buell, J., Underwood, D., Krogsgaard, M.

(2023) Nat Commun 14: 3763-3763

Released	2022-11-02
Method	X-RAY DIFFRACTION 1.66 Å
Organisms	Homo sapiens
Macromolecule	TRAV27_LC13 TCR ALPHA CHAIN (protein) TRBV27_LC13 TCR BETA CHAIN (protein)
Unique Ligands	CL

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7S8J \| pdb_00007s8j	Download File View File

PHOSPHOPEPTIDE-SPECIFIC LC13 TCR, ORTHORHOMBIC CRYSTAL FORM

Patskovska, L., Patskovsky, Y., Nyovanie, S., Natarajan, A., Joshi, B., Morin, B., Brittsan, C., Huber, O., Gordon, S., Michelet, X., Schmitzberger, F., Stein, R., Findeis, M., Hurwitz, A., Van Dijk, M., Buell, J., Underwood, D., Krogsgaard, M.

(2023) Nat Commun 14: 3763-3763

Released	2022-11-02
Method	X-RAY DIFFRACTION 1.92 Å
Organisms	Homo sapiens
Macromolecule	TRAV27_LC13 TCR ALPHA CHAIN (protein) TRBV27_LC13 TCR BETA CHAIN (protein)
Unique Ligands	CL

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1M3U | pdb_00001m3u

1PPY | pdb_00001ppy

1PQE | pdb_00001pqe

1PQF | pdb_00001pqf

1PQH | pdb_00001pqh

1PT0 | pdb_00001pt0

1PT1 | pdb_00001pt1

1PYQ | pdb_00001pyq

1PYU | pdb_00001pyu

2C45 | pdb_00002c45

2OAN | pdb_00002oan

3FHD | pdb_00003fhd

3ZXU | pdb_00003zxu

5MU3 | pdb_00005mu3

7RZD | pdb_00007rzd

7RZJ | pdb_00007rzj

7S79 | pdb_00007s79

7S7D | pdb_00007s7d

7S7E | pdb_00007s7e

7S7F | pdb_00007s7f

7S8A | pdb_00007s8a

7S8E | pdb_00007s8e

7S8F | pdb_00007s8f

7S8I | pdb_00007s8i

7S8J | pdb_00007s8j