RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Citation Author = "Wright, L.M."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 54 Structures.

Refinements

Structure Determination Methodology

experimental (54)

Scientific Name of Source Organism

	Homo sapiens (28)
	Severe acute respiratory syndrome coronavirus 2 (26)
	synthetic construct (6)
	Talaromyces marneffei PM1 (5)
	Mus musculus (4)
	Severe acute respiratory syndrome-related coronavirus (4)
	Tequatrovirus T4 (4)
	Laribacter hongkongensis HLHK9 (3)
	Influenza A virus (A/Shanghai/02/2013(H7N9)) (2)
	Influenza A virus (A/goose/Guangdong/1/1996(H5N1)) (2)

More...

Taxonomy

	Riboviria (44)
	Eukaryota (38)
	other sequences (6)
	Duplodnaviria (4)
	Bacteria (3)

Experimental Method

	X-RAY DIFFRACTION (37)
	ELECTRON MICROSCOPY (16)
	SOLUTION NMR (1)

Polymer Entity Type

	Protein (54)
	DNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (7)
	2.0 - 2.5 (10)
	2.5 - 3.0 (15)
	3.0 - 3.5 (10)
	3.5 - 4.0 (5)
	4.0 - 4.5 (2)
	> 4.5 (2)

Release Date

	2005 - 2009 (5)
	2010 - 2014 (9)
	2015 - 2019 (7)
	2020 - 2024 (29)
	2025 - 2029 (4)

Enzyme Classification Name

Hydrolases (15)

Membrane Protein Annotation

	mpstruc (1)
	OPM (1)

Symmetry Type

	Asymmetric (30)
	Cyclic (27)

SCOP Classification

	All beta proteins (13)
	Artifacts (3)
	Coiled coil proteins (1)
	Alpha and beta proteins (a+b) (4)
	Multi-domain proteins (alpha and beta) (1)
	Alpha and beta proteins (a/b) (1)

AllSelected

1 to 25 of 54 Structures

Page 1 of 3

Sort by

Explore in 3D

1WOF \| pdb_00001wof	Download File View File

Crystal Structure Of SARS-CoV Mpro in Complex with an Inhibitor N1

Yang, H., Bartlam, M., Xue, X., Yang, K., Liang, W., Rao, Z.

(2005) PLoS Biol 3: 324-334

Released	2005-08-30
Method	X-RAY DIFFRACTION 2 Å
Organisms	Severe acute respiratory syndrome-related coronavirus
Macromolecule	3C-like proteinase (protein)
Unique Ligands	I12

Explore in 3D

2AMD \| pdb_00002amd	Download File View File

Crystal Structure Of SARS_CoV Mpro in Complex with an Inhibitor N9

Yang, H., Xue, X., Yang, K., Zhao, Q., Bartlam, M., Rao, Z.

(2005) PLoS Biol 3: 324-334

Released	2005-09-13
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Severe acute respiratory syndrome-related coronavirus
Macromolecule	3C-like proteinase (protein)
Unique Ligands	9IN

Explore in 3D

2AMP \| pdb_00002amp	Download File View File

Crystal Structure Of Porcine Transmissible Gastroenteritis Virus Mpro in Complex with an Inhibitor N1

Yang, H., Xue, X., Yang, K., Zhao, Q., Bartlam, M., Rao, Z.

(2005) PLoS Biol 3: 324-334

Released	2005-09-13
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Transmissible gastroenteritis virus
Macromolecule	3C-like proteinase (protein)
Unique Ligands	I12

Explore in 3D

2AMQ \| pdb_00002amq	Download File View File

Crystal Structure Of SARS_CoV Mpro in Complex with an Inhibitor N3

Yang, H., Xue, X., Yang, K., Zhao, Q., Bartlam, M., Rao, Z.

(2005) PLoS Biol 3: 324-334

Released	2005-09-13
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Severe acute respiratory syndrome-related coronavirus synthetic construct
Macromolecule	3C-like proteinase (protein) N-[(5-METHYLISOXAZOL-3-YL)CARBONYL]ALANYL-L-VALYL-N~1~-((1R,2Z)-4-(BENZYLOXY)-4-OXO-1-{[(3R)-2-OXOPYRROLIDIN-3-YL]METHYL}BUT-2-ENYL)-L-LEUCINAMIDE (protein)

Explore in 3D

2D2D \| pdb_00002d2d	Download File View File

Crystal Structure Of SARS-CoV Mpro in Complex with an Inhibitor I2

Yang, H., Bartlam, M., Xue, X., Yang, K., Liang, W., Ding, Y., Rao, Z.

(2005) PLoS Biol 3: 324-334

Released	2005-09-20
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Severe acute respiratory syndrome-related coronavirus
Macromolecule	3C-like proteinase (protein)
Unique Ligands	ENB

Explore in 3D

3L1N \| pdb_00003l1n	Download File View File

Crystal structure of Mp1p ligand binding domain 2 complexd with palmitic acid

Liao, S., Tung, E.T., Zheng, W., Chong, K., Xu, Y., Bartlam, M., Rao, Z., Yuen, K.Y.

(2010) J Biological Chem 285: 9211-9220

Released	2010-01-05
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Talaromyces marneffei
Macromolecule	Cell wall antigen (protein)
Unique Ligands	PLM

Explore in 3D

3SYY \| pdb_00003syy	Download File View File

Crystal Structure of an alkaline exonuclease (LHK-Exo) from Laribacter hongkongensis

Yang, W., Chen, W.Y., Wang, H., Zhang, Q., Zhou, W., Bartlam, M., Watt, R.M., Rao, Z.

(2011) Nucleic Acids Res 39: 9803-9819

Released	2012-02-15
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Laribacter hongkongensis HLHK9
Macromolecule	Exonuclease (protein)
Unique Ligands	MG

Explore in 3D

3SZ4 \| pdb_00003sz4	Download File View File

Crystal Structure of LHK-Exo in complex with dAMP

Yang, W., Chen, W.Y., Wang, H., Zhang, Q., Zhou, W., Bartlam, M., Watt, R.M., Rao, Z.

(2011) Nucleic Acids Res 39: 9803-9819

Released	2012-02-15
Method	X-RAY DIFFRACTION 2.59 Å
Organisms	Laribacter hongkongensis HLHK9
Macromolecule	Exonuclease (protein)
Unique Ligands	D5M, MG

Explore in 3D

3SZ5 \| pdb_00003sz5	Download File View File

Crystal Structure of LHK-Exo in complex with 5-phosphorylated oligothymidine (dT)4

Yang, W., Chen, W.Y., Wang, H., Zhang, Q., Zhou, W., Bartlam, M., Watt, R.M., Rao, Z.

(2011) Nucleic Acids Res 39: 9803-9819

Released	2012-02-15
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Laribacter hongkongensis HLHK9
Macromolecule	Exonuclease (protein) 5'-D(PTPTPTPT)-3' (nucleic acid)
Unique Ligands	MG

Explore in 3D

4MHH \| pdb_00004mhh	Download File View File

Crystal structure of Fab H5M9 in complex with influenza virus hemagglutinin from A/Viet Nam/1203/2004 (H5N1)

Zhu, X., Wilson, I.A.

(2013) J Virol 87: 12619-12635

Released	2013-10-02
Method	X-RAY DIFFRACTION 3.564 Å
Organisms	Influenza A virus (A/Viet Nam/1203/2004(H5N1)) Mus musculus
Macromolecule	H5M9 antibody, heavy chain (IgG1) (protein) H5M9 antibody, light chain (kappa) (protein) Hemagglutinin HA1 chain (protein) Hemagglutinin HA2 chain (protein)
Unique Ligands	NAG
Unique branched monosaccharides	MAN, NAG

Explore in 3D

4MHI \| pdb_00004mhi	Download File View File

Crystal structure of a H5N1 influenza virus hemagglutinin from A/goose/Guangdong/1/96

Zhu, X., Wilson, I.A.

(2013) J Virol 87: 12619-12635

Released	2013-10-02
Method	X-RAY DIFFRACTION 2.595 Å
Organisms	Influenza A virus (A/goose/Guangdong/1/1996(H5N1))
Macromolecule	Hemagglutinin HA1 chain (protein) Hemagglutinin HA2 chain (protein)
Unique Ligands	NAG
Unique branched monosaccharides	MAN, NAG

Explore in 3D

4MHJ \| pdb_00004mhj	Download File View File

Crystal structure of Fab H5M9 in complex with influenza virus hemagglutinin from A/goose/Guangdong/1/96 (H5N1)

Zhu, X., Wilson, I.A.

(2013) J Virol 87: 12619-12635

Released	2013-10-02
Method	X-RAY DIFFRACTION 6.98 Å
Organisms	Influenza A virus (A/goose/Guangdong/1/1996(H5N1)) Mus musculus
Macromolecule	H5M9 antibody, heavy chain (IgG1) (protein) H5M9 antibody, light chain (kappa) (protein) Hemagglutinin HA1 chain (protein) Hemagglutinin HA2 chain (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, MAN, NAG

Explore in 3D

4NJL \| pdb_00004njl	Download File View File

Crystal structure of middle east respiratory syndrome coronavirus S2 protein fusion core

Zhu, Y., Lu, L., Qin, L., Ye, S., Jiang, S., Zhang, R.

(2014) Nat Commun 5: 3067-3067

Released	2014-02-19
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Middle East respiratory syndrome-related coronavirus
Macromolecule	S protein (protein)
Unique Ligands	PGE

Explore in 3D

4QZV \| pdb_00004qzv	Download File View File

Bat-derived coronavirus HKU4 uses MERS-CoV receptor human CD26 for cell entry

Gao, F.G., Wang, Q.H., Qi, J.X., Lu, G.W.

(2014) Cell Host Microbe 16: 328-337

Released	2014-10-29
Method	X-RAY DIFFRACTION 2.592 Å
Organisms	Homo sapiens Tylonycteris bat coronavirus HKU4
Macromolecule	Dipeptidyl peptidase 4 (protein) Spike protein S1 (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, NAG

Explore in 3D

5CSD \| pdb_00005csd	Download File View File

Ligand binding domain 2 of Penicillium marneffei MP1 protein in complex with arachidonic acids

Lam, W.H., Zhang, H., Hao, Q.

(2017) Cell Chem Biol 24: 182-194

Released	2016-07-27
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Talaromyces marneffei PM1
Macromolecule	Envelope glycoprotein (protein)
Unique Ligands	ACD, GOL

Explore in 3D

5DO2 \| pdb_00005do2	Download File View File

Complex structure of MERS-RBD bound with 4C2 antibody

Li, Y., Wan, Y., Liu, P., Zhao, J., Lu, G., Qi, J., Wang, Q., Lu, X., Wu, Y., Liu, W., Yuen, K.Y., Perlman, S., Gao, G.F., Yan, J.

(2015) Cell Res 25: 1237-1249

Released	2015-10-14
Method	X-RAY DIFFRACTION 2.409 Å
Organisms	Middle East respiratory syndrome-related coronavirus Mus musculus
Macromolecule	4C2 heavy chain (protein) 4C2 light chain (protein) S protein (protein)
Unique Ligands	NAG

Explore in 3D

5E7X \| pdb_00005e7x	Download File View File

Ligand binding domain 1 of Penicillium marneffei MP1 protein in complex with palmitic acid

Lam, W.H., Zhang, H., Hao, Q.

(2019) Infect Immun

Released	2016-10-19
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Talaromyces marneffei PM1
Macromolecule	Cell wall antigen (protein)
Unique Ligands	ACT, GOL, PLM

Explore in 3D

5ECF \| pdb_00005ecf	Download File View File

Ligand binding domain 1 of Penicillium marneffei MP1 protein complexed with arachidonic acids

Lam, W.H., Zhang, H., Hao, Q.

(2019) Infect Immun

Released	2016-10-19
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Talaromyces marneffei PM1
Macromolecule	Cell wall antigen (protein)
Unique Ligands	ACD

Explore in 3D

5FB7 \| pdb_00005fb7	Download File View File

Ligand binding domain 2 of Penicillium marneffei MP1 protein complexed with multiple arachidonic acids

Lam, W.H., Zhang, H., Hao, Q.

(2017) Cell Chem Biol 24: 182-194

Released	2016-12-14
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Talaromyces marneffei PM1
Macromolecule	Envelope glycoprotein (protein)
Unique Ligands	ACD

Explore in 3D

5XGR \| pdb_00005xgr	Download File View File

Structure of the S1 subunit C-terminal domain from bat-derived coronavirus HKU5 spike protein

Xue, H., Qi, J., Song, H., Qihui, W., Shi, Y., Gao, G.F.

(2017) Virology 507: 101-109

Released	2017-05-10
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Pipistrellus bat coronavirus HKU5
Macromolecule	Spike protein S1 (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

Explore in 3D

6J1U \| pdb_00006j1u	Download File View File

influenza virus nucleoprotein with a specific inhibitor

Pang, B., Zhang, W.Z., Zhang, H.M., Hao, Q.

(2021) J Virol 95:

Released	2020-01-01
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Influenza A virus (A/Wilson-Smith/1933(H1N1))
Macromolecule	Nucleoprotein (protein)
Unique Ligands	B7O

Explore in 3D

6J6F \| pdb_00006j6f	Download File View File

Ligand binding domain 1 and 2 of Talaromyces marneffei Mp1 protein

Lam, W.H., Zhang, H., Hao, Q.

(2019) Infect Immun 87:

Released	2019-03-06
Method	X-RAY DIFFRACTION 4.2 Å
Organisms	Talaromyces marneffei PM1
Macromolecule	Envelope glycoprotein (protein)
Unique Ligands	NI

Explore in 3D

6LZG \| pdb_00006lzg	Download File View File

Structure of novel coronavirus spike receptor-binding domain complexed with its receptor ACE2

Wang, Q.H., Song, H., Qi, J.X.

(2020) Cell 181: 894-904.e9

Released	2020-03-18
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Angiotensin-converting enzyme 2 (protein) Spike protein S1 (protein)
Unique Ligands	NAG, ZN

Explore in 3D

6M56 \| pdb_00006m56	Download File View File

Solution NMR Structure of Peptide P9R

Yuen, K.Y., Zhao, H.J., Yung, T.M., Sze, K.H.

(2020) Nat Commun 11: 4252-4252

Released	2020-09-09
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	Peptide P9R (protein)

Explore in 3D

6XEY \| pdb_00006xey	Download File View File

Cryo-EM structure of the SARS-CoV-2 spike glycoprotein bound to Fab 2-4

Rapp, M., Shapiro, L., Ho, D.D.

(2020) Nature 584: 450-456

Released	2020-07-22
Method	ELECTRON MICROSCOPY 3.25 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	2-4 Heavy Chain (protein) 2-4 Light Chain (protein) Spike glycoprotein (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, NAG

1 to 25 of 54 Structures

Page 1 of 3

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1WOF | pdb_00001wof

2AMD | pdb_00002amd

2AMP | pdb_00002amp

2AMQ | pdb_00002amq

2D2D | pdb_00002d2d

3L1N | pdb_00003l1n

3SYY | pdb_00003syy

3SZ4 | pdb_00003sz4

3SZ5 | pdb_00003sz5

4MHH | pdb_00004mhh

4MHI | pdb_00004mhi

4MHJ | pdb_00004mhj

4NJL | pdb_00004njl

4QZV | pdb_00004qzv

5CSD | pdb_00005csd

5DO2 | pdb_00005do2

5E7X | pdb_00005e7x

5ECF | pdb_00005ecf

5FB7 | pdb_00005fb7

5XGR | pdb_00005xgr

6J1U | pdb_00006j1u

6J6F | pdb_00006j6f

6LZG | pdb_00006lzg

6M56 | pdb_00006m56

6XEY | pdb_00006xey