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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Winkler, F.K."

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Search Summary

This query matches 76 Structures.

Refinements

Structure Determination Methodology

experimental (76)

Scientific Name of Source Organism

	Escherichia coli (28)
	Homo sapiens (19)
	Azospirillum brasilense (11)
	Mus musculus (3)
	Candida albicans (2)
	Citrobacter freundii (2)
	Halalkalibacterium halodurans C-125 (2)
	Pseudomonas sp. VLB120 (2)
	Pyrobaculum aerophilum (2)
	Vicugna pacos (2)

More...

Taxonomy

	Bacteria (46)
	Eukaryota (27)
	Archaea (2)
	Eukaryota (eukaryotes) (2)
	Varidnaviria (2)
	Riboviria (1)

Experimental Method

	X-RAY DIFFRACTION (73)
	ELECTRON MICROSCOPY (2)
	SOLUTION NMR (1)

Polymer Entity Type

	Protein (76)
	DNA (8)

Refinement Resolution (Å)

	1.0 - 1.5 (9)
	1.5 - 2.0 (12)
	2.0 - 2.5 (36)
	2.5 - 3.0 (12)
	3.0 - 3.5 (6)

Release Date

	1980 - 1984 (1)
	1990 - 1994 (7)
	1995 - 1999 (11)
	2000 - 2004 (14)
	2005 - 2009 (29)
	2010 - 2014 (12)
	2020 - 2024 (2)

Enzyme Classification Name

	Hydrolases (24)
	Transferases (5)
	Lyases (3)
	Oxidoreductases (1)

Membrane Protein Annotation

	MemProtMD (19)
	PDBTM (19)
	OPM (2)
	mpstruc (4)

Symmetry Type

	Cyclic (53)
	Asymmetric (25)
	Dihedral (4)
	Icosahedral (1)

SCOP Classification

	Alpha and beta proteins (a+b) (16)
	Alpha and beta proteins (a/b) (16)
	All beta proteins (11)
	Membrane and cell surface proteins and peptides (16)
	Small proteins (7)
	All alpha proteins (9)
	Artifacts (5)
	Multi-domain proteins (alpha and beta) (2)
	Designed proteins (1)

AllSelected

1 to 25 of 76 Structures

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1AZ0 \| pdb_00001az0	Download File View File

ECORV ENDONUCLEASE/DNA COMPLEX

Perona, J.J., Martin, A.M.

(1997) J Mol Biology 273: 207-225

Released	1998-06-19
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli
Macromolecule	PROTEIN (TYPE II RESTRICTION ENZYME ECORV) (protein) DNA (5'-D(APAPAPGPAPTPAPTPCPTP*T)-3') (nucleic acid)
Unique Ligands	CA

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1AZ3 \| pdb_00001az3	Download File View File

ECORV ENDONUCLEASE, UNLIGANDED, FORM B

Perona, J., Martin, A.

(1997) J Mol Biology 273: 207-225

Released	1998-05-27
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Escherichia coli
Macromolecule	ECORV ENDONUCLEASE (protein)

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1AZ4 \| pdb_00001az4	Download File View File

ECORV ENDONUCLEASE, UNLIGANDED, FORM B, T93A MUTANT

Perona, J., Martin, A.

(1997) J Mol Biology 273: 207-225

Released	1998-05-27
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Escherichia coli
Macromolecule	ECORV ENDONUCLEASE (protein)

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1BF9 \| pdb_00001bf9	Download File View File

N-TERMINAL EGF-LIKE DOMAIN FROM HUMAN FACTOR VII, NMR, 23 STRUCTURES

Muranyi, A., Finn, B.E., Gippert, G.P., Forsen, S., Stenflo, J., Drakenberg, T.

(1998) Biochemistry 37: 10605-10615

Released	1999-02-16
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	FACTOR VII (protein)

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1DAN \| pdb_00001dan	Download File View File

Complex of active site inhibited human blood coagulation factor VIIA with human recombinant soluble tissue factor

Banner, D.W.

(1996) Nature 380: 41-46

Released	1997-09-04
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	BLOOD COAGULATION FACTOR VIIA heavy chain (protein) BLOOD COAGULATION FACTOR VIIA light chain (protein) SOLUBLE TISSUE FACTOR (protein)
Unique Ligands	0Z6, BGC, CA, CAC, CL, FUC

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1DMT \| pdb_00001dmt	Download File View File

STRUCTURE OF HUMAN NEUTRAL ENDOPEPTIDASE COMPLEXED WITH PHOSPHORAMIDON

Oefner, C., D'Arcy, A., Hennig, M., Winkler, F.K., Dale, G.E.

(2000) J Mol Biology 296: 341-349

Released	2000-12-20
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	NEUTRAL ENDOPEPTIDASE (protein)
Unique Ligands	GOL, NAG, RDF, ZN

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1DRF \| pdb_00001drf	Download File View File

CRYSTAL STRUCTURE OF HUMAN DIHYDROFOLATE REDUCTASE COMPLEXED WITH FOLATE

Oefner, C., D'Arcy, A., Winkler, F.K.

(1988) Eur J Biochem 174: 377-385

Released	1992-01-15
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	DIHYDROFOLATE REDUCTASE (protein)
Unique Ligands	FOL, SO4

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1F97 \| pdb_00001f97	Download File View File

SOLUBLE PART OF THE JUNCTION ADHESION MOLECULE FROM MOUSE

Kostrewa, D., Brockhaus, M., D'Arcy, A., Dale, G., Bazzoni, G., Dejana, E., Winkler, F., Hennig, M.

(2001) EMBO J 20: 4391-4398

Released	2001-01-10
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Mus musculus
Macromolecule	JUNCTION ADHESION MOLECULE (protein)
Unique Ligands	MG

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1FG9 \| pdb_00001fg9	Download File View File

3:1 COMPLEX OF INTERFERON-GAMMA RECEPTOR WITH INTERFERON-GAMMA DIMER

Thiel, D.J., le Du, M.-H., Walter, R.L., D'Arcy, A., Chene, C., Fountoulakis, M., Garotta, G., Winkler, F.K., Ealick, S.E.

(2000) Structure 8: 927-936

Released	2000-08-11
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	INTERFERON GAMMA (protein) INTERFERON-GAMMA RECEPTOR ALPHA CHAIN (protein)

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1FR1 \| pdb_00001fr1	Download File View File

REFINED CRYSTAL STRUCTURE OF BETA-LACTAMASE FROM CITROBACTER FREUNDII INDICATES A MECHANISM FOR BETA-LACTAM HYDROLYSIS

Oefner, C., D'Arcy, A., Daly, J.J., Winkler, F.K.

(1990) Nature 343: 284-288

Released	2001-01-17
Method	X-RAY DIFFRACTION 2 Å
Organisms	Citrobacter freundii
Macromolecule	BETA-LACTAMASE (protein)

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1FR6 \| pdb_00001fr6	Download File View File

REFINED CRYSTAL STRUCTURE OF BETA-LACTAMASE FROM CITROBACTER FREUNDII INDICATES A MECHANISM FOR BETA-LACTAM HYDROLYSIS

Oefner, C., D'Arcy, A., Daly, J.J., Winkler, F.K.

(1990) Nature 343: 284-288

Released	2001-01-17
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Citrobacter freundii
Macromolecule	BETA-LACTAMASE (protein)
Unique Ligands	AZR

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1IYK \| pdb_00001iyk	Download File View File

Crystal structure of candida albicans N-myristoyltransferase with myristoyl-COA and peptidic inhibitor

Sogabe, S., Fukami, T.A., Morikami, K., Shiratori, Y., Aoki, Y., D'Arcy, A., Winkler, F.K., Banner, D.W., Ohtsuka, T.

(2002) Chem Biol 9: 1119-1128

Released	2002-12-30
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Candida albicans
Macromolecule	MYRISTOYL-COA:PROTEIN N-MYRISTOYLTRANSFERASE (protein)
Unique Ligands	MIM, MYA

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1IYL \| pdb_00001iyl	Download File View File

Crystal Structure of Candida albicans N-myristoyltransferase with Non-peptidic Inhibitor

Sogabe, S., Fukami, T.A., Morikami, K., Shiratori, Y., Aoki, Y., D'Arcy, A., Winkler, F.K., Banner, D.W., Ohtsuka, T.

(2002) Chem Biol 9: 1119-1128

Released	2002-12-30
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Candida albicans
Macromolecule	Myristoyl-CoA:Protein N-Myristoyltransferase (protein)
Unique Ligands	R64

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1JBU \| pdb_00001jbu	Download File View File

Coagulation Factor VII Zymogen (EGF2/Protease) in Complex with Inhibitory Exosite Peptide A-183

Eigenbrot, C., Kirchhofer, D., Dennis, M.S., Santell, L., Lazarus, R.A., Stamos, J., Ultsch, M.H.

(2001) Structure 9: 627-636

Released	2001-07-11
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli Homo sapiens
Macromolecule	COAGULATION FACTOR VII (protein) Peptide exosite inhibitor A-183 (protein)
Unique Ligands	BEN, SO4

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1JR4 \| pdb_00001jr4	Download File View File

CATECHOL O-METHYLTRANSFERASE BISUBSTRATE-INHIBITOR COMPLEX

Ruf, A., Stihle, M.

(2001) Angew Chem Int Ed Engl 40: 4040-4042

Released	2002-08-10
Method	X-RAY DIFFRACTION 2.63 Å
Organisms	Rattus norvegicus
Macromolecule	CATECHOL O-METHYLTRANSFERASE, SOLUBLE FORM (protein)
Unique Ligands	CL4, MG

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1JRH \| pdb_00001jrh	Download File View File

COMPLEX (ANTIBODY/ANTIGEN)

Winkler, F.K., Sogabe, S.

(1997) J Mol Biology 273: 882-897

Released	1998-03-25
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	ANTIBODY A6 (protein) INTERFERON-GAMMA RECEPTOR ALPHA CHAIN (protein)

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1PDG \| pdb_00001pdg	Download File View File

CRYSTAL STRUCTURE OF HUMAN PLATELET-DERIVED GROWTH FACTOR BB

Oefner, C., Darcy, A.D., Winkler, F.K., Eggimann, B., Hosnag, M.

(1992) EMBO J 11: 3921-3926

Released	1994-01-31
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	PLATELET-DERIVED GROWTH FACTOR BB (protein)

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1RV5 \| pdb_00001rv5	Download File View File

COMPLEX OF ECORV ENDONUCLEASE WITH D(AAAGAT)/D(ATCTT)

Horton, N.C., Perona, J.J.

(1998) J Mol Biology 277: 779-783

Released	1998-11-11
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Escherichia coli
Macromolecule	ECORV ENDONUCLEASE (protein) 5'-D(APAPAPGPAPTAPTPCPTP*T)-3' (nucleic acid)

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1RVA \| pdb_00001rva	Download File View File

MG2+ BINDING TO THE ACTIVE SITE OF ECO RV ENDONUCLEASE: A CRYSTALLOGRAPHIC STUDY OF COMPLEXES WITH SUBSTRATE AND PRODUCT DNA AT 2 ANGSTROMS RESOLUTION

Kostrewa, D., Winkler, F.K.

(1995) Biochemistry 34: 683-696

Released	1995-01-26
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli
Macromolecule	PROTEIN (ECO RV (E.C.3.1.21.4)) (protein) DNA (5'-D(APAPAPGPAPTPAPTPCPTP*T)-3') (nucleic acid)

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1RVB \| pdb_00001rvb	Download File View File

MG2+ BINDING TO THE ACTIVE SITE OF ECO RV ENDONUCLEASE: A CRYSTALLOGRAPHIC STUDY OF COMPLEXES WITH SUBSTRATE AND PRODUCT DNA AT 2 ANGSTROMS RESOLUTION

Kostrewa, D., Winkler, F.K.

(1995) Biochemistry 34: 683-696

Released	1995-01-26
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Escherichia coli
Macromolecule	PROTEIN (ECO RV (E.C.3.1.21.4)) (protein) DNA (5'-D(APAPAPGPAPTPAPTPCPTP*T)-3') (nucleic acid)
Unique Ligands	MG

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1RVC \| pdb_00001rvc	Download File View File

MG2+ BINDING TO THE ACTIVE SITE OF ECO RV ENDONUCLEASE: A CRYSTALLOGRAPHIC STUDY OF COMPLEXES WITH SUBSTRATE AND PRODUCT DNA AT 2 ANGSTROMS RESOLUTION

Kostrewa, D., Winkler, F.K.

(1995) Biochemistry 34: 683-696

Released	1995-01-26
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Escherichia coli
Macromolecule	PROTEIN (ECO RV (E.C.3.1.21.4)) (protein) DNA (5'-D(APAPAPGPAPT)-3') (nucleic acid) DNA (5'-D(APTPCPTP*T)-3') (nucleic acid)
Unique Ligands	MG

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1RVE \| pdb_00001rve	Download File View File

THE CRYSTAL STRUCTURE OF ECORV ENDONUCLEASE AND OF ITS COMPLEXES WITH COGNATE AND NON-COGNATE DNA FRAGMENTS

Winkler, F.K.

(1993) EMBO J 12: 1781-1795

Released	1994-01-31
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli
Macromolecule	ENDONUCLEASE EcoR V (protein)

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1S9Z \| pdb_00001s9z	Download File View File

SYNTHETIC 17 AMINO ACID LONG PEPTIDE THAT FORMS A NATIVE-LIKE COILED-COIL AT AMBIENT TEMPERATURE AND AGGREGATES INTO AMYLOID-LIKE FIBRILS AT HIGHER TEMPERATURES.

Kammerer, R.A., Kostrewa, D., Zurdo, J., Detken, A., Garcia-Echeverria, C., Green, J.D., Muller, S.A., Meier, B.H., Winkler, F.K., Dobson, C.M., Steinmetz, M.O.

(2004) Proc Natl Acad Sci U S A 101: 4435-4440

Released	2004-04-06
Method	X-RAY DIFFRACTION 2.01 Å
Macromolecule	SYNTHETIC COILED-COIL PEPTIDE (protein)
Unique Ligands	NA, ZN

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1THG \| pdb_00001thg	Download File View File

1.8 ANGSTROMS REFINED STRUCTURE OF THE LIPASE FROM GEOTRICHUM CANDIDUM

Schrag, J.D., Cygler, M.

(1993) J Mol Biology 230: 575-591

Released	1993-10-31
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Geotrichum candidum
Macromolecule	Lipase 2 (protein)
Unique Ligands	NAG, NDG
Unique branched monosaccharides	NAG

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1TNR \| pdb_00001tnr	Download File View File

CRYSTAL STRUCTURE OF THE SOLUBLE HUMAN 55 KD TNF RECEPTOR-HUMAN TNF-BETA COMPLEX: IMPLICATIONS FOR TNF RECEPTOR ACTIVATION

Banner, D.W.

(1993) Cell 73: 431-445

Released	1994-07-31
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Homo sapiens
Macromolecule	TUMOR NECROSIS FACTOR BETA (protein) TUMOR NECROSIS FACTOR RECEPTOR P55 (protein)

1 to 25 of 76 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1AZ0 | pdb_00001az0

1AZ3 | pdb_00001az3

1AZ4 | pdb_00001az4

1BF9 | pdb_00001bf9

1DAN | pdb_00001dan

1DMT | pdb_00001dmt

1DRF | pdb_00001drf

1F97 | pdb_00001f97

1FG9 | pdb_00001fg9

1FR1 | pdb_00001fr1

1FR6 | pdb_00001fr6

1IYK | pdb_00001iyk

1IYL | pdb_00001iyl

1JBU | pdb_00001jbu

1JR4 | pdb_00001jr4

1JRH | pdb_00001jrh

1PDG | pdb_00001pdg

1RV5 | pdb_00001rv5

1RVA | pdb_00001rva

1RVB | pdb_00001rvb

1RVC | pdb_00001rvc

1RVE | pdb_00001rve

1S9Z | pdb_00001s9z

1THG | pdb_00001thg

1TNR | pdb_00001tnr