RCSB PDB: Search

1VYW \| pdb_00001vyw	Download File View File

Structure of CDK2/Cyclin A with PNU-292137

Pevarello, P., Brasca, M.G., Amici, R., Orsini, P., Traquandi, G., Corti, L., Piutti, C., Sansonna, P., Villa, M., Pierce, B.S., Pulici, M., Giordano, P., Martina, K., Fritzen, E.L., Nugent, R.A., Casale, E., Cameron, A., Ciomei, M., Roletto, F., Isacchi, A., Fogliatto, G., Pesenti, E., Pastori, W., Marsiglio, A., Leach, K.L., Clare, P.M., Fiorentini, F., Varasi, M., Vulpetti, A., Warpehoski, M.A.

(2004) J Med Chem 47: 3367

Released	2004-06-10
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	CELL DIVISION PROTEIN KINASE 2 (protein) CYCLIN A2 (protein)
Unique Ligands	292, SO4

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1VYZ \| pdb_00001vyz	Download File View File

Structure of CDK2 complexed with PNU-181227

Pevarello, P., Brasca, M.G., Amici, R., Orsini, P., Traquandi, G., Corti, L., Piutti, C., Sansonna, P., Villa, M., Pierce, B.S., Pulici, M., Giordano, G., Martina, K., Lfritzen, E., Nugent, R.A., Casale, E., Cameron, A., Ciomei, M., Roletto, F., Isacchi, A., Fogliatto, G., Pesenti, E., Pastori, W., Marsiglio, W., Leach, K.L., Clare, P.M., Fiorentini, F., Varasi, M., Vulpetti, A., Warpehoski, M.A.

(2004) J Med Chem 47: 3367

Released	2004-06-17
Method	X-RAY DIFFRACTION 2.21 Å
Organisms	Homo sapiens
Macromolecule	CELL DIVISION PROTEIN KINASE 2 (protein)
Unique Ligands	N5B

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2BMC \| pdb_00002bmc	Download File View File

Aurora-2 T287D T288D complexed with PHA-680632

Cameron, A.D., Izzo, G., Sagliano, A., Rusconi, L., Storici, P., Fancelli, D., Berta, D., Bindi, S., Catana, C., Forte, B., Giordano, P., Mantegani, S., Meroni, M., Moll, J., Pittala, V., Severino, D., Tonani, R., Varasi, M., Vulpetti, A., Vianello, P.

(2005) J Med Chem 48: 3080

Released	2005-03-17
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	SERINE THREONINE-PROTEIN KINASE 6 (protein)
Unique Ligands	MPY

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2BPM \| pdb_00002bpm	Download File View File

STRUCTURE OF CDK2-CYCLIN A WITH PHA-630529

Cameron, A., Fogliatto, G., Pevarello, P., Brasca, M.G., Orsini, P., Traquandi, G., Longo, A., Nesi, M., Orzi, F., Piutti, C., Sansonna, P., Varasi, M., Vulpetti, A., Roletto, F., Alzani, R., Ciomei, M., Albanese, C., Pastori, W., Marsiglio, A., Pesenti, E., Fiorentini, F., Bischoff, J.R., Mercurio, C.

(2005) J Med Chem 48: 2944

Released	2005-12-08
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	CELL DIVISION PROTEIN KINASE 2 (protein) CYCLIN A2 (protein)
Unique Ligands	529, SO4

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2C4G \| pdb_00002c4g	Download File View File

STRUCTURE OF CDK2-CYCLIN A WITH PHA-533514

Cameron, A., Fogliatto, G., Pevarello, P., Fancelli, D., Vulpetti, A., Amici, R., Villa, M., Pittala, V., Ciomei, M., Mercurio, C., Bischoff, J.R., Roletto, F., Varasi, M., Brasca, M.G.

(2006) Bioorg Med Chem Lett 16: 1084

Released	2005-11-23
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	CELL DIVISION PROTEIN KINASE 2 (protein) CYCLIN A2 (protein)
Unique Ligands	514, SO4

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2J4Z \| pdb_00002j4z	Download File View File

Structure of Aurora-2 in complex with PHA-680626

Cameron, A.D., Izzo, G., Storici, P., Rusconi, L., Fancelli, D., Varasi, M., Berta, D., Bindi, S., Forte, B., Severino, D., Tonani, R., Vianello, P.

(2006) J Med Chem 49: 7247-7251

Released	2006-11-06
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	SERINE THREONINE-PROTEIN KINASE 6 (protein)
Unique Ligands	626, ARS

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2J50 \| pdb_00002j50	Download File View File

Structure of Aurora-2 in complex with PHA-739358

Cameron, A.D., Izzo, G., Storici, P., Rusconi, L., Fancelli, D., Varasi, M., Berta, D., Bindi, S., Forte, B., Severino, D., Tonani, R., Vianello, P.

(2006) J Med Chem 49: 7247

Released	2006-11-06
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	SERINE/THREONINE-PROTEIN KINASE 6 (protein)
Unique Ligands	627, SO4

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2WPA \| pdb_00002wpa	Download File View File

Optimisation of 6,6-Dimethyl Pyrrolo 3,4-c pyrazoles: Identification of PHA-793887, a Potent CDK Inhibitor Suitable for Intravenous Dosing

Brasca, M.G., Albanese, C., Alzani, R., Amici, R., Avanzi, N., Ballinari, D., Bischoff, J., Borghi, D., Casale, E., Croci, V., Fiorentini, F., Isacchi, A., Mercurio, C., Nesi, M., Orsini, P., Pastori, W., Pesenti, E., Pevarello, P., Roussel, P., Varasi, M., Volpi, D., Vulpetti, A., Ciomei, M.

(2010) Bioorg Med Chem 18: 1844

Released	2010-02-23
Method	X-RAY DIFFRACTION 2.51 Å
Organisms	Homo sapiens
Macromolecule	CELL DIVISION PROTEIN KINASE 2 (protein) CYCLIN A2 (protein)
Unique Ligands	889, SO4

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2XRU \| pdb_00002xru	Download File View File

AURORA-A T288E COMPLEXED WITH PHA-828300

Bindi, S., Fancelli, D., Alli, C., Berta, D., Bertrand, J.A., Cameron, A.D., Cappella, P., Carpinelli, P., Cervi, G., Croci, W., D'Anello, M., Forte, B., LauraGiorgini, M., Marsiglio, A., Moll, J., Pesenti, E., Pittala, V., Pulici, M., Riccardi-Sirtori, F., Roletto, F., Soncini, C., Storici, P., Varasi, M., Volpi, D., Zugnoni, P., Vianello, P.

(2010) Bioorg Med Chem 18: 7113

Released	2010-09-29
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	SERINE/THREONINE-PROTEIN KINASE 6 (protein)
Unique Ligands	400

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3DU8 \| pdb_00003du8	Download File View File

Crystal structure of GSK-3 beta in complex with NMS-869553A

Bossi, R.T.

(2009) J Med Chem 52: 293-307

Released	2009-03-03
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Glycogen synthase kinase-3 beta (protein)
Unique Ligands	553

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3FT5 \| pdb_00003ft5	Download File View File

Structure of HSP90 bound with a novel fragment

Barker, J.B., Mather, O., Cheng, R.K.Y., Palan, S., Felicetti, B.

(2009) ChemMedChem 4: 963-966

Released	2009-05-05
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Heat shock protein HSP 90-alpha (protein)
Unique Ligands	MO8

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3FT8 \| pdb_00003ft8	Download File View File

Structure of HSP90 bound with a noval fragment.

Barker, J.B., Cheng, R.K.Y., Palan, S., Felicetti, B.

(2009) ChemMedChem 4: 963-966

Released	2009-06-30
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Heat shock protein HSP 90-alpha (protein)
Unique Ligands	MOJ

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4UV8 \| pdb_00004uv8	Download File View File

LSD1(KDM1A)-CoREST in complex with 1-Benzyl-Tranylcypromine

Vianello, P., Botrugno, O., Cappa, A., Ciossani, G., Dessanti, P., Mai, A., Mattevi, A., Meroni, G., Minucci, S., Thaler, F., Tortorici, M., Trifiro, P., Valente, S., Villa, M., Varasi, M., Mercurio, C.

(2014) Eur J Med Chem 86C: 352

Released	2014-09-10
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	LYSINE-SPECIFIC HISTONE DEMETHYLASE 1A (protein) REST COREPRESSOR 1 (protein)
Unique Ligands	D69

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4UV9 \| pdb_00004uv9	Download File View File

LSD1(KDM1A)-CoREST in complex with 1-Ethyl-Tranylcypromine

Vianello, P., Botrugno, O., Cappa, A., Ciossani, G., Dessanti, P., Mai, A., Mattevi, A., Meroni, G., Minucci, S., Thaler, F., Tortorici, M., Trifiro, P., Valente, S., Villa, M., Varasi, M., Mercurio, C.

(2014) Eur J Med Chem 86C: 352

Released	2014-09-10
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	LYSINE-SPECIFIC HISTONE DEMETHYLASE 1A (protein) REST COREPRESSOR 1 (protein)
Unique Ligands	D70

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4UVA \| pdb_00004uva	Download File View File

LSD1(KDM1A)-CoREST in complex with 1-Methyl-Tranylcypromine (1R,2S)

Vianello, P., Botrugno, O., Cappa, A., Ciossani, G., Dessanti, P., Mai, A., Mattevi, A., Meroni, G., Minucci, S., Thaler, F., Tortorici, M., Trifiro, P., Valente, S., Villa, M., Varasi, M., Mercurio, C.

(2014) Eur J Med Chem 86C: 352

Released	2014-09-10
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	LYSINE-SPECIFIC HISTONE DEMETHYLASE 1A (protein) REST COREPRESSOR 1 (protein)
Unique Ligands	D73

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4UVB \| pdb_00004uvb	Download File View File

LSD1(KDM1A)-CoREST in complex with 1-Methyl-Tranylcypromine (1S,2R)

Vianello, P., Botrugno, O., Cappa, A., Ciossani, G., Dessanti, P., Mai, A., Mattevi, A., Meroni, G., Minucci, S., Thaler, F., Tortorici, M., Trifiro, P., Valente, S., Villa, M., Varasi, M., Mercurio, C.

(2014) Eur J Med Chem 86C: 352

Released	2014-09-10
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	LYSINE-SPECIFIC HISTONE DEMETHYLASE 1A (protein) REST COREPRESSOR 1 (protein)
Unique Ligands	D51

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4UVC \| pdb_00004uvc	Download File View File

LSD1(KDM1A)-CoREST in complex with 1-Phenyl-Tranylcypromine

Vianello, P., Botrugno, O., Cappa, A., Ciossani, G., Dessanti, P., Mai, A., Mattevi, A., Meroni, G., Minucci, S., Thaler, F., Tortorici, M., Trifiro, P., Valente, S., Villa, M., Varasi, M., Mercurio, C.

(2014) Eur J Med Chem 86C: 352

Released	2014-09-10
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Homo sapiens
Macromolecule	LYSINE-SPECIFIC HISTONE DEMETHYLASE 1A (protein) REST COREPRESSOR 1 (protein)
Unique Ligands	D52

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4UXN \| pdb_00004uxn	Download File View File

LSD1(KDM1A)-CoREST in complex with Z-Pro derivative of MC2580

Rodriguez, V., Valente, S., Stazi, G., Lucidi, A., Mercurio, C., Vianello, P., Ciossani, G., Mattevi, A., Botrugno, O.A., Dessanti, P., Minucci, S., Varasi, M., Mai, A.

(2015) ChemMedChem 6: 665-670

Released	2015-02-25
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Homo sapiens
Macromolecule	LYSINE-SPECIFIC HISTONE DEMETHYLASE 1A (protein) REST COREPRESSOR 1 (protein)
Unique Ligands	FAD, M8A

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5LGN \| pdb_00005lgn	Download File View File

Thieno[3,2-b]pyrrole-5-carboxamides as Novel Reversible Inhibitors of Histone Lysine Demethylase KDM1A/LSD1: Compound 19

Mattevi, A., Ciossani, G.

(2017) J Med Chem 60: 1673-1692

Released	2017-02-22
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Homo sapiens
Macromolecule	Lysine-specific histone demethylase 1A (protein) REST corepressor 1 (protein)
Unique Ligands	6W0, FAD

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5LGT \| pdb_00005lgt	Download File View File

Thieno[3,2-b]pyrrole-5-carboxamides as Novel Reversible Inhibitors of Histone Lysine Demethylase KDM1A/LSD1: Compound 15

Mattevi, A., Ciossani, G.

(2017) J Med Chem 60: 1693-1715

Released	2017-02-22
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	Lysine-specific histone demethylase 1A (protein) REST corepressor 1 (protein)
Unique Ligands	6W3, FAD

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5LGU \| pdb_00005lgu	Download File View File

Thieno[3,2-b]pyrrole-5-carboxamides as Novel Reversible Inhibitors of Histone Lysine Demethylase KDM1A/LSD1: Compound 34

Mattevi, A., Ciossani, G.

(2017) J Med Chem 60: 1693-1715

Released	2017-02-22
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Homo sapiens
Macromolecule	Lysine-specific histone demethylase 1A (protein) REST corepressor 1 (protein)
Unique Ligands	6W1, FAD

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5LHG \| pdb_00005lhg	Download File View File

Structure of the KDM1A/CoREST complex with the inhibitor 4-methyl-N-[4-[[4-(1-methylpiperidin-4-yl)oxyphenoxy]methyl]phenyl]thieno[3,2-b]pyrrole-5-carboxamide

Cecatiello, V., Pasqualato, S.

(2017) J Med Chem 60: 1693-1715

Released	2017-02-22
Method	X-RAY DIFFRACTION 3.34 Å
Organisms	Homo sapiens
Macromolecule	Lysine-specific histone demethylase 1A (protein) REST corepressor 1 (protein)
Unique Ligands	6X3, FAD, GOL

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5LHH \| pdb_00005lhh	Download File View File

Structure of the KDM1A/CoREST complex with the inhibitor 4-ethyl-N-[3-(methoxymethyl)-2-[[4-[[(3R)-pyrrolidin-3-yl]methoxy]phenoxy]methyl]phenyl]thieno[3,2-b]pyrrole-5-carboxamide

Cecatiello, V., Pasqualato, S.

(2017) J Med Chem 60: 1693-1715

Released	2017-02-22
Method	X-RAY DIFFRACTION 3.05 Å
Organisms	Homo sapiens
Macromolecule	Lysine-specific histone demethylase 1A (protein) REST corepressor 1 (protein)
Unique Ligands	6X0, FAD, GOL

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5LHI \| pdb_00005lhi	Download File View File

Structure of the KDM1A/CoREST complex with the inhibitor N-[3-(ethoxymethyl)-2-[[4-[[(3R)-pyrrolidin-3-yl]methoxy]phenoxy]methyl]phenyl]-4-methylthieno[3,2-b]pyrrole-5-carboxamide

Cecatiello, V., Pasqualato, S.

(2017) J Med Chem 60: 1693-1715

Released	2017-02-22
Method	X-RAY DIFFRACTION 3.4 Å
Organisms	Homo sapiens
Macromolecule	LYSINE-SPECIFIC HISTONE DEMETHYLASE 1 (protein) REST corepressor 1 (protein)
Unique Ligands	6X5, FAD, GOL

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6TE1 \| pdb_00006te1	Download File View File

Structure of the KDM1A/CoREST complex with the inhibitor 2-[3-{4-chloro-3-[(4-chlorophenyl)ethynyl]phenyl}-1-(3-morpholin-4-ylpropyl)-1,4,6,7-tetrahydro-5H-pyrazolo[4,3-c]pyridin-5-yl]-2-oxoethanol

Pasqualato, S., Cecatiello, V.

(2020) ACS Med Chem Lett 11: 754-759

Released	2020-06-03
Method	X-RAY DIFFRACTION 3.11 Å
Organisms	Homo sapiens
Macromolecule	Lysine-specific histone demethylase 1A (protein) REST corepressor 1 (protein)
Unique Ligands	FAD, GOL, N4K

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1VYW | pdb_00001vyw

1VYZ | pdb_00001vyz

2BMC | pdb_00002bmc

2BPM | pdb_00002bpm

2C4G | pdb_00002c4g

2J4Z | pdb_00002j4z

2J50 | pdb_00002j50

2WPA | pdb_00002wpa

2XRU | pdb_00002xru

3DU8 | pdb_00003du8

3FT5 | pdb_00003ft5

3FT8 | pdb_00003ft8

4UV8 | pdb_00004uv8

4UV9 | pdb_00004uv9

4UVA | pdb_00004uva

4UVB | pdb_00004uvb

4UVC | pdb_00004uvc

4UXN | pdb_00004uxn

5LGN | pdb_00005lgn

5LGT | pdb_00005lgt

5LGU | pdb_00005lgu

5LHG | pdb_00005lhg

5LHH | pdb_00005lhh

5LHI | pdb_00005lhi

6TE1 | pdb_00006te1