RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Citation Author = "Silvian, L.F."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 21 Structures.

Refinements

Structure Determination Methodology

experimental (21)

Scientific Name of Source Organism

	Homo sapiens (15)
	Staphylococcus aureus (3)
	Saccharolobus solfataricus (2)
	Escherichia coli (1)
	Rattus norvegicus (1)

Taxonomy

	Eukaryota (15)
	Bacteria (4)
	Archaea (2)

Experimental Method

X-RAY DIFFRACTION (21)

Polymer Entity Type

	Protein (21)
	RNA (4)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (5)
	2.0 - 2.5 (7)
	2.5 - 3.0 (8)

Release Date

	1995 - 1999 (3)
	2000 - 2004 (3)
	2010 - 2014 (3)
	2015 - 2019 (8)
	2020 - 2024 (4)

Enzyme Classification Name

	Transferases (9)
	Ligases (4)

Symmetry Type

	Asymmetric (16)
	Cyclic (5)

SCOP Classification

	All beta proteins (8)
	Alpha and beta proteins (a+b) (6)
	All alpha proteins (4)
	Alpha and beta proteins (a/b) (4)
	Multi-domain proteins (alpha and beta) (2)
	Artifacts (1)

AllSelected

1 to 21 of 21 Structures

Page 1 of 1

Sort by

Explore in 3D

1FFY \| pdb_00001ffy	Download File View File

INSIGHTS INTO EDITING FROM AN ILE-TRNA SYNTHETASE STRUCTURE WITH TRNA(ILE) AND MUPIROCIN

Silvian, L.F., Wang, J., Steitz, T.A.

(1999) Science 285: 1074-1077

Released	2000-08-07
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Staphylococcus aureus
Macromolecule	ISOLEUCYL-TRNA SYNTHETASE (protein) ISOLEUCYL-TRNA (nucleic acid)
Unique Ligands	K, MG, MRC, ZN

Explore in 3D

1K1Q \| pdb_00001k1q	Download File View File

Crystal Structure of a DinB Family Error Prone DNA Polymerase from Sulfolobus solfataricus

Silvian, L.F., Toth, E.A., Pham, P., Goodman, M.F., Ellenberger, T.

(2001) Nat Struct Biol 8: 984-989

Released	2001-10-31
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Saccharolobus solfataricus
Macromolecule	DBH protein (protein)

Explore in 3D

1K1S \| pdb_00001k1s	Download File View File

Crystal Structure of DinB from Sulfolobus solfataricus

Silvian, L.F., Toth, E.A., Pham, P., Goodman, M.F., Ellenberger, T.

(2001) Nat Struct Biol 8: 984-989

Released	2001-10-31
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Saccharolobus solfataricus
Macromolecule	DBH protein (protein)

Explore in 3D

1QTQ \| pdb_00001qtq	Download File View File

GLUTAMINYL-TRNA SYNTHETASE COMPLEXED WITH TRNA AND AN AMINO ACID ANALOG

Rath, V.L., Silvian, L.F., Beijer, B., Sproat, B.S., Steitz, T.A.

(1998) Structure 6: 439-449

Released	1998-05-27
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Escherichia coli
Macromolecule	PROTEIN (GLUTAMINYL-TRNA SYNTHETASE) (protein) RNA (TRNA GLN II ) (nucleic acid)
Unique Ligands	QSI, SO4

Explore in 3D

1QU2 \| pdb_00001qu2	Download File View File

INSIGHTS INTO EDITING FROM AN ILE-TRNA SYNTHETASE STRUCTURE WITH TRNA(ILE) AND MUPIROCIN

Silvian, L.F., Wang, J., Steitz, T.A.

(1999) Science 285: 1074-1077

Released	1999-08-31
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Staphylococcus aureus
Macromolecule	ISOLEUCYL-TRNA SYNTHETASE (protein) ISOLEUCYL-TRNA (nucleic acid)
Unique Ligands	K, MG, MRC, ZN

Explore in 3D

1QU3 \| pdb_00001qu3	Download File View File

INSIGHTS INTO EDITING FROM AN ILE-TRNA SYNTHETASE STRUCTURE WITH TRNA(ILE) AND MUPIROCIN

Silvian, L.F., Wang, J., Steitz, T.A.

(1999) Science 285: 1074-1077

Released	1999-08-31
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Staphylococcus aureus
Macromolecule	ISOLEUCYL-TRNA SYNTHETASE (protein) ISOLEUCYL-TRNA (nucleic acid)
Unique Ligands	MRC, ZN

Explore in 3D

3GEN \| pdb_00003gen	Download File View File

The 1.6 A crystal structure of human bruton's tyrosine kinase bound to a pyrrolopyrimidine-containing compound

Marcotte, D.J., Liu, Y.T., Arduini, R.M., Hession, C.A., Miatkowski, K., Wildes, C.P., Cullen, P.F., Hopkins, B., Mertsching, E., Jenkins, T.J., Romanowski, M.J., Baker, D.P., Silvian, L.F.

(2010) Protein Sci 19: 429-439

Released	2010-01-19
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein kinase BTK (protein)
Unique Ligands	B43

Explore in 3D

3K54 \| pdb_00003k54	Download File View File

Structures of human Bruton's tyrosine kinase in active and inactive conformations suggests a mechanism of activation for TEC family kinases.

Marcotte, D.J., Liu, Y.-T., Arduini, R.M., Hession, C.A., Miatkowski, K., Wildes, C.P., Cullen, P.F., Hopkins, B.T., Mertsching, E., Jenkins, T.J., Romanowski, M.J., Baker, D.P., Silvian, L.F.

(2010) Protein Sci 19: 429-439

Released	2010-01-19
Method	X-RAY DIFFRACTION 1.94 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein kinase BTK (protein)
Unique Ligands	1N1

Explore in 3D

3LKJ \| pdb_00003lkj	Download File View File

Small Molecule Inhibition of the TNF Family Cyokine CD40 Ligand Through a Subunit Fracture Mechanism

Silvian, L.F., Whitty, A.

(2011) ACS Chem Biol 6: 636-647

Released	2011-02-02
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	CD40 ligand (protein)
Unique Ligands	LKJ, NAG

Explore in 3D

5IXK \| pdb_00005ixk	Download File View File

RORgamma in complex with inverse agonist BIO399.

Marcotte, D.J.

(2016) BMC Struct Biol 16: 7-7

Released	2016-06-15
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Homo sapiens
Macromolecule	Nuclear receptor ROR-gamma (protein)
Unique Ligands	6EW

Explore in 3D

5IZ0 \| pdb_00005iz0	Download File View File

RORgamma in complex with agonist BIO592 and Coactivator EBI96

Marcotte, D.J.

(2016) BMC Struct Biol 16: 7-7

Released	2016-06-15
Method	X-RAY DIFFRACTION 2.635 Å
Organisms	Homo sapiens
Macromolecule	GLU-PHE-PRO-TYR-LEU-LEU-SER-LEU-LEU-GLY-GLU-VAL-SER-PRO-GLN (protein) Nuclear receptor ROR-gamma (protein)
Unique Ligands	6F1, CL

Explore in 3D

5J5T \| pdb_00005j5t	Download File View File

GLK co-crystal structure with aminopyrrolopyrimidine inhibitor

Silvian, L.F., Marcotte, D.

(2017) Protein Sci 26: 152-162

Released	2016-10-26
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Homo sapiens
Macromolecule	Mitogen-activated protein kinase kinase kinase kinase 3 (protein)
Unique Ligands	6G2

Explore in 3D

5KNJ \| pdb_00005knj	Download File View File

Pseudokinase Domain of MLKL bound to Compound 1.

Marcotte, D.J.

(2016) PLoS One 11: e0165983-e0165983

Released	2016-11-16
Method	X-RAY DIFFRACTION 2.88 Å
Organisms	Homo sapiens
Macromolecule	Mixed lineage kinase domain-like protein (protein)
Unique Ligands	6UX

Explore in 3D

5KO1 \| pdb_00005ko1	Download File View File

Pseudokinase Domain of MLKL bound to Compound 4.

Marcotte, D.J.

(2016) PLoS One 11: e0165983-e0165983

Released	2016-11-16
Method	X-RAY DIFFRACTION 2.16 Å
Organisms	Homo sapiens
Macromolecule	Mixed lineage kinase domain-like protein (protein)
Unique Ligands	6UY

Explore in 3D

6AR4 \| pdb_00006ar4	Download File View File

Crystal structure of PICK1 in complex with the small molecule inhibitor 1o

Marcotte, D.

(2018) Sci Rep 8: 13438-13438

Released	2018-08-22
Method	X-RAY DIFFRACTION 1.69 Å
Organisms	Homo sapiens
Macromolecule	PRKCA-binding protein (protein)
Unique Ligands	BQA

Explore in 3D

6BJN \| pdb_00006bjn	Download File View File

PICK1 PDZ domain in complex with the class I PDZ binding motif QSAV

Marcotte, D.J.

(2018) Protein Sci 27: 672-680

Released	2018-01-10
Method	X-RAY DIFFRACTION 2.43 Å
Organisms	Homo sapiens
Macromolecule	PRKCA-binding protein (protein)

Explore in 3D

6BJO \| pdb_00006bjo	Download File View File

PICK1 PDZ domain in complex with the small molecule inhibitor BIO124.

Marcotte, D.J.

(2018) Protein Sci 27: 672-680

Released	2018-01-10
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Homo sapiens
Macromolecule	PRKCA-binding protein (protein)
Unique Ligands	DUY

Explore in 3D

8FLG \| pdb_00008flg	Download File View File

Bruton's tyrosine kinase in complex with an orthosteric inhibitor

Metrick, C.M., Marcotte, D.J.

(2023) Bioorg Med Chem Lett 80: 129108-129108

Released	2023-03-01
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein kinase BTK (protein)
Unique Ligands	DMS, Y8C

Explore in 3D

8FLH \| pdb_00008flh	Download File View File

Bruton's tyrosine kinase in complex with an orthosteric inhibitor

Metrick, C.M., Marcotte, D.J.

(2023) Bioorg Med Chem Lett 80: 129108-129108

Released	2023-03-01
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein kinase BTK (protein)
Unique Ligands	DMS, Y8H

Explore in 3D

8FLV \| pdb_00008flv	Download File View File

Bruton's tyrosine kinase in complex with compound 34

Metrick, C.M., Marcotte, D.J.

(2023) Bioorg Med Chem Lett 80: 129108-129108

Released	2023-04-05
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein kinase BTK (protein)
Unique Ligands	DMS, PEG, ZB9

Explore in 3D

8W31 \| pdb_00008w31	Download File View File

Crystal structure of parkin (R0RB):2pUb with activator compound

Sauve, V., Gehring, K.

(2024) Nat Commun 15: 7707-7707

Released	2024-08-21
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens Rattus norvegicus
Macromolecule	E3 ubiquitin-protein ligase parkin (protein) Ubiquitin (protein)
Unique Ligands	A1AE9, GOL, ZN

1 to 21 of 21 Structures

Page 1 of 1

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1FFY | pdb_00001ffy

1K1Q | pdb_00001k1q

1K1S | pdb_00001k1s

1QTQ | pdb_00001qtq

1QU2 | pdb_00001qu2

1QU3 | pdb_00001qu3

3GEN | pdb_00003gen

3K54 | pdb_00003k54

3LKJ | pdb_00003lkj

5IXK | pdb_00005ixk

5IZ0 | pdb_00005iz0

5J5T | pdb_00005j5t

5KNJ | pdb_00005knj

5KO1 | pdb_00005ko1

6AR4 | pdb_00006ar4

6BJN | pdb_00006bjn

6BJO | pdb_00006bjo

8FLG | pdb_00008flg

8FLH | pdb_00008flh

8FLV | pdb_00008flv

8W31 | pdb_00008w31