RCSB PDB: Search

2JSE \| pdb_00002jse	Download File View File

NMR reveals absence of hydrogen bonding in adjacent UU and AG mismatches in an isolated internal loop from ribosomal RNA.

Shankar, N.

(2007) Biochemistry 46: 12665-12678

Released	2007-11-20
Method	SOLUTION NMR
Macromolecule	RNA (5'-R(GPGPAPGPUPGPGPCPCPGPAPAPAPGPGPCPAPUPCPUPCPC)-3') (nucleic acid)

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2NCI \| pdb_00002nci	Download File View File

RNA Bulge Loop that Specifically Binds Metal Ions

Gu, X., Schroeder, S.J.

(2016) J Phys Chem Lett 7: 3841-3846

Released	2016-09-28
Method	SOLUTION NMR
Macromolecule	RNA (28-MER) (nucleic acid)

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3LWT \| pdb_00003lwt	Download File View File

Crystal structure of the Yeast Sac1: Implications for its phosphoinositide phosphatase function

Mao, Y., Manford, A., Xia, T., Saxena, A.K., Stefan, C., Hu, F., Emr, S.D.

(2010) EMBO J 29: 1489-1498

Released	2010-05-05
Method	X-RAY DIFFRACTION 1.956 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Phosphoinositide phosphatase SAC1 (protein)

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3VFE \| pdb_00003vfe	Download File View File

Virtual Screening and X-Ray Crystallography for Human Kallikrein 6 Inhibitors with an Amidinothiophene P1 Group

Chen, X., Zhang, Y., Xia, T., Wang, R.

(2012) ACS Med Chem Lett 3: 159-164

Released	2012-11-21
Method	X-RAY DIFFRACTION 1.88 Å
Organisms	Homo sapiens
Macromolecule	Kallikrein-6 (protein)
Unique Ligands	0HL

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3W2D \| pdb_00003w2d	Download File View File

Crystal Structure of Staphylococcal Eenterotoxin B in complex with a novel neutralization monoclonal antibody Fab fragment

Liang, S.Y., Hu, S., Dai, J.X., Guo, Y.J., Lou, Z.Y.

(2014) MAbs 6: 119-129

Released	2013-12-25
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Mus musculus Staphylococcus aureus
Macromolecule	Enterotoxin type B (protein) Monoclonal Antibody 3E2 Fab figment heavy chain (protein) Monoclonal Antibody 3E2 Fab figment light chain (protein)
Unique Ligands	SO4

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4D8N \| pdb_00004d8n	Download File View File

Human Kallikrein 6 Inhibitors with a para-Amidobenzylanmine P1 Group Carry a High Binding Efficiency

Chen, X., Xia, T., Wang, R.

(2012) Bioorg Med Chem Lett 22: 2450-2455

Released	2012-03-21
Method	X-RAY DIFFRACTION 1.68 Å
Organisms	Homo sapiens
Macromolecule	Kallikrein-6 (protein)
Unique Ligands	0HM

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5Y66 \| pdb_00005y66	Download File View File

Crystal structure of Pseudomonas fluorescens Kynurenine 3-monooxygenase in complex with L-KYN and Ro61-8048

Xiang, Y., Gao, J.J., Zhu, D.Y.

(2018) FASEB J 32: 2036-2045

Released	2017-12-27
Method	X-RAY DIFFRACTION 2.34 Å
Organisms	Pseudomonas fluorescens
Macromolecule	Kynurenine 3-monooxygenase (protein)
Unique Ligands	7ZR, FAD, KYN

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5Y77 \| pdb_00005y77	Download File View File

Crystal structure of Pseudomonas fluorescens Kynurenine 3-monooxygenase in complex with L-KYN (seMet derivative)

Xiang, Y., Gao, J.J., Zhu, D.Y.

(2018) FASEB J 32: 2036-2045

Released	2017-12-27
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Pseudomonas fluorescens
Macromolecule	Kynurenine 3-monooxygenase (protein)
Unique Ligands	FAD, KYN

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5Y7A \| pdb_00005y7a	Download File View File

Crystal structure of Pseudomonas fluorescens Kynurenine 3-monooxygenase in complex with L-KYN

Xiang, Y., Gao, J.J., Zhu, D.Y.

(2018) FASEB J 32: 2036-2045

Released	2017-12-27
Method	X-RAY DIFFRACTION 1.846 Å
Organisms	Pseudomonas fluorescens
Macromolecule	Kynurenine 3-monooxygenase (protein)
Unique Ligands	FAD, KYN

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7DTY \| pdb_00007dty	Download File View File

Structural basis of ligand selectivity conferred by the human glucose-dependent insulinotropic polypeptide receptor

Zhao, F.H., Zhang, C., Zhou, Q.T., Hang, K.N., Zou, X.Y., Chen, Y., Wu, F., Rao, Q.D., Dai, A.T., Yin, W.C., Shen, D.D., Zhang, Y., Xia, T., Stevens, R.C., Xu, H.E., Yang, D.H., Zhao, L.H., Wang, M.W.

(2021) Elife 10:

Released	2021-08-04
Method	ELECTRON MICROSCOPY 2.98 Å
Organisms	Bos taurus Homo sapiens Rattus norvegicus synthetic construct
Macromolecule	Unique protein chains: 6
Unique Ligands	CLR

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7DUQ \| pdb_00007duq	Download File View File

Cryo-EM structure of the compound 2 and GLP-1-bound human GLP-1 receptor-Gs complex

Cong, Z., Chen, L., Ma, H., Zhou, Q., Zou, X., Ye, C., Dai, A., Liu, Q., Huang, W., Sun, X., Wang, X., Xu, P., Zhao, L., Xia, T., Zhong, W., Yang, D., Xu, H.E., Zhang, Y., Wang, M.

(2021) Nat Commun 12: 3763-3763

Released	2021-07-14
Method	ELECTRON MICROSCOPY 2.5 Å
Organisms	Bos taurus Homo sapiens Rattus norvegicus synthetic construct
Macromolecule	Unique protein chains: 6
Unique Ligands	CLR, HNO

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7DUR \| pdb_00007dur	Download File View File

Cryo-EM structure of the compound 2-bound human GLP-1 receptor-Gs complex

Cong, Z., Chen, L., Ma, H., Zhou, Q., Zou, X., Ye, C., Dai, A., Liu, Q., Huang, W., Sun, X., Wang, X., Xu, P., Zhao, L., Xia, T., Zhong, W., Yang, D., Xu, H.E., Zhang, Y., Wang, M.

(2021) Nat Commun 12: 3763-3763

Released	2021-08-11
Method	ELECTRON MICROSCOPY 3.3 Å
Organisms	Bos taurus Homo sapiens Rattus norvegicus synthetic construct
Macromolecule	Glucagon-like peptide 1 receptor (protein) Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2 (protein) Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 (protein) Guanine nucleotide-binding protein G(s) subunit alpha isoforms short (protein) Nanobody-35 (protein)
Unique Ligands	CLR, HNO

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7E14 \| pdb_00007e14	Download File View File

Compound2_GLP-1R_OWL833_Gs complex structure

Cong, Z.T., Chen, L.N., Ma, H.L., Yang, D.H., Xu, H.E., Zhang, Y., Wang, M.W.

(2021) Nat Commun 12: 3763-3763

Released	2021-07-07
Method	ELECTRON MICROSCOPY 2.9 Å
Organisms	Bos taurus Homo sapiens Rattus norvegicus synthetic construct
Macromolecule	G protein (protein) Glucagon-like peptide 1 receptor (protein) Gs (protein) Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 (protein) Nb35 (protein)
Unique Ligands	CLR, HNO, V6G

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7EVM \| pdb_00007evm	Download File View File

Cryo-EM structure of the compound 2-bound human GLP-1 receptor-Gs complex

Cong, Z., Chen, L., Ma, H., Zhou, Q., Zou, X., Ye, C., Dai, A., Liu, Q., Huang, W., Sun, X., Wang, X., Xu, P., Zhao, L., Xia, T., Zhong, W., Yang, D., Xu, H.E., Zhang, Y., Wang, M.

(2021) Nat Commun 12: 3763-3763

Released	2021-08-11
Method	ELECTRON MICROSCOPY 2.5 Å
Organisms	Bos taurus Homo sapiens Rattus norvegicus synthetic construct
Macromolecule	Glucagon-like peptide 1 receptor (protein) Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2 (protein) Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 (protein) Guanine nucleotide-binding protein G(s) subunit alpha isoforms short (protein) Nanobody-35 (protein)
Unique Ligands	CLR, HNO

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7F16 \| pdb_00007f16	Download File View File

Cryo-EM structure of parathyroid hormone receptor type 2 in complex with a tuberoinfundibular peptide of 39 residues and G protein

Wang, X., Cheng, X., Zhao, L.H., Wang, Y., Ye, C., Zou, X., Dai, A., Cong, Z., Chen, J., Zhou, Q., Xia, T., Jiang, H., Xu, H.E., Yang, D., Wang, M.W.

(2021) Proc Natl Acad Sci U S A 118:

Released	2021-08-18
Method	ELECTRON MICROSCOPY 2.8 Å
Organisms	Bos taurus Homo sapiens Lama glama Rattus norvegicus
Macromolecule	Unique protein chains: 6
Unique Ligands	CLR, PLM

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7FIM \| pdb_00007fim	Download File View File

Cryo-EM structure of the tirzepatide (LY3298176)-bound human GLP-1R-Gs complex

Zhao, F.H., Zhou, Q.T., Cong, Z.T., Hang, K.N., Zou, X.Y., Zhang, C., Chen, Y., Dai, A.T., Liang, A.Y., Ming, Q.Q., Wang, M., Chen, L.N., Xu, P.Y., Chang, R.L., Feng, W.B., Xia, T., Zhang, Y., Wu, B.L., Yang, D.H., Zhao, L.H., Xu, H.E., Wang, M.W.

(2022) Nat Commun 13: 1057-1057

Released	2022-03-02
Method	ELECTRON MICROSCOPY 3.4 Å
Organisms	Bos taurus Homo sapiens Rattus norvegicus synthetic construct
Macromolecule	Unique protein chains: 6

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7FIN \| pdb_00007fin	Download File View File

Cryo-EM structure of the GIPR/GLP-1R/GCGR triagonist peptide 20-bound human GIPR-Gs complex

Zhao, F.h., Zhou, Q.T., Cong, Z.T., Hang, K.N., Zou, X.Y., Zhang, C., Chen, Y., Dai, A.T., Liang, A.Y., Ming, Q.Q., Wang, M., Chen, L.N., Xu, P.Y., Chang, R.L., Feng, W.B., Xia, T., Zhang, Y., Wu, B.L., Yang, D.H., Zhao, L.H., Xu, H.E., Wang, M.W.

(2022) Nat Commun 13: 1057-1057

Released	2022-02-23
Method	ELECTRON MICROSCOPY 3.1 Å
Organisms	Bos taurus Homo sapiens Rattus norvegicus synthetic construct
Macromolecule	Unique protein chains: 6
Unique Ligands	CLR, GGL

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7FIY \| pdb_00007fiy	Download File View File

Cryo-EM structure of the tirzepatide-bound human GIPR-Gs complex

Zhao, F.H., Zhou, Q.T., Cong, Z.T., Hang, K.N., Zou, X.Y., Zhang, C., Chen, Y., Dai, A.T., Liang, A.Y., Ming, Q.Q., Wang, M., Chen, L.N., Xu, P.Y., Chang, R.L., Feng, W.B., Xia, T., Zhang, Y., Wu, B.L., Yang, D.H., Zhao, L.H., Xu, H.E., Wang, M.W.

(2022) Nat Commun 13: 1057-1057

Released	2022-03-02
Method	ELECTRON MICROSCOPY 3.4 Å
Organisms	Bos taurus Homo sapiens Rattus norvegicus synthetic construct
Macromolecule	Unique protein chains: 6
Unique Ligands	CLR

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7MYN \| pdb_00007myn	Download File View File

Cryo-EM Structure of p110alpha in complex with p85alpha

Liu, X., Yang, S., Hart, J.R., Xu, Y., Zou, X., Zhang, H., Zhou, Q., Xia, T., Zhang, Y., Yang, D., Wang, M.-W., Vogt, P.K.

(2021) Proc Natl Acad Sci U S A 118:

Released	2021-11-10
Method	ELECTRON MICROSCOPY 2.79 Å
Organisms	Homo sapiens
Macromolecule	Phosphatidylinositol 3-kinase regulatory subunit alpha (protein) Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform (protein)

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7MYO \| pdb_00007myo	Download File View File

Cryo-EM structure of p110alpha in complex with p85alpha inhibited by BYL-719

Liu, X., Yang, S., Hart, J.R., Xu, Y., Zou, X., Zhang, H., Zhou, Q., Xia, T., Zhang, Y., Yang, D., Wang, M.-W., Vogt, P.K.

(2021) Proc Natl Acad Sci U S A 118:

Released	2021-11-10
Method	ELECTRON MICROSCOPY 2.92 Å
Organisms	Homo sapiens
Macromolecule	Phosphatidylinositol 3-kinase regulatory subunit alpha (protein) Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform (protein)
Unique Ligands	1LT

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7V35 \| pdb_00007v35	Download File View File

Cryo-EM structure of the GIPR/GLP-1R/GCGR triagonist peptide 20-bound human GCGR-Gs complex

Zhao, F.h., Zhou, Q.T., Cong, Z.T., Hang, K.N., Zou, X.Y., Zhang, C., Chen, Y., Dai, A.T., Liang, A.Y., Ming, Q.Q., Wang, M., Chen, L.N., Xu, P.Y., Chang, R.L., Feng, W.B., Xia, T., Zhang, Y., Wu, B.L., Yang, D.H., Zhao, L.H., Xu, H.E., Wang, M.W.

(2022) Nat Commun 13: 1057-1057

Released	2022-03-02
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	Bos taurus Homo sapiens Rattus norvegicus synthetic construct
Macromolecule	Unique protein chains: 6
Unique Ligands	D6M

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7V9L \| pdb_00007v9l	Download File View File

Cryo-EM structure of the SV1-Gs complex.

Cong, Z.T., Zhou, F.L., Zhang, C., Zou, X.Y., Zhang, H.B., Wang, Y.Z., Zhou, Q.T., Cai, X.Q., Liu, Q.F., Li, J., Shao, L.J., Mao, C.Y., Wang, X., Wu, J.H., Xia, T., Zhao, L.H., Jiang, H.L., Zhang, Y., Xu, H.E., Cheng, X., Yang, D.H., Wang, M.W.

(2021) Proc Natl Acad Sci U S A 118:

Released	2022-04-06
Method	ELECTRON MICROSCOPY 2.6 Å
Organisms	Bos taurus Homo sapiens Rattus norvegicus synthetic construct
Macromolecule	GHRH receptor splice variant 1,GHRH receptor splice variant 1,GHRH receptor splice variant 1,SV1 (protein) Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2 (protein) Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 (protein) Guanine nucleotide-binding protein G(s) subunit alpha isoforms short (protein) Nanobody 35 (protein)

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7V9M \| pdb_00007v9m	Download File View File

Cryo-EM structure of the GHRH-bound human GHRHR splice variant 1 complex

Cong, Z.T., Zhou, F.L., Zhang, C., Zou, X.Y., Zhang, H.B., Wang, Y.Z., Zhou, Q.T., Cai, X.Q., Liu, Q.F., Li, J., Shao, L.J., Mao, C.Y., Wang, X., Wu, J.H., Xia, T., Zhao, L.H., Jiang, H.L., Zhang, Y., Xu, H.E., Chen, X., Yang, D.H., Wang, M.W.

(2021) Proc Natl Acad Sci U S A 118:

Released	2021-10-20
Method	ELECTRON MICROSCOPY 3.29 Å
Organisms	Bos taurus Homo sapiens Rattus norvegicus synthetic construct
Macromolecule	Unique protein chains: 6

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7VAB \| pdb_00007vab	Download File View File

Cryo-EM structure of the non-acylated tirzepatide (LY3298176)-bound human GIPR-Gs complex

Zhao, F.H., Zhou, Q.T., Cong, Z.T., Hang, K.N., Zou, X.Y., Zhang, C., Chen, Y., Dai, A.T., Liang, A.Y., Ming, Q.Q., Wang, M., Chen, L.N., Xu, P.Y., Chang, R.L., Feng, W.B., Xia, T., Zhang, Y., Wu, B.L., Yang, D.H., Zhao, L.H., Xu, H.E., Wang, M.W.

(2022) Nat Commun 13: 1057-1057

Released	2022-03-02
Method	ELECTRON MICROSCOPY 3.2 Å
Organisms	Bos taurus Homo sapiens Rattus norvegicus synthetic construct
Macromolecule	Unique protein chains: 6
Unique Ligands	CLR

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7VBH \| pdb_00007vbh	Download File View File

Cryo-EM structure of the GIPR/GLP-1R/GCGR triagonist peptide 20-bound human GLP-1R-Gs complex

Zhao, F.H., Zhou, Q.T., Cong, Z.T., Hang, K.N., Zou, X.Y., Zhang, C., Chen, Y., Dai, A.T., Liang, A.Y., Ming, Q.Q., Wang, M., Chen, L.N., Xu, P.Y., Chang, R.L., Feng, W.B., Xia, T., Zhang, Y., Wu, B.L., Yang, D.H., Zhao, L.H., Xu, H.E., Wang, M.W.

(2022) Nat Commun 13: 1057-1057

Released	2022-04-06
Method	ELECTRON MICROSCOPY 3 Å
Organisms	Bos taurus Escherichia coli Homo sapiens Rattus norvegicus
Macromolecule	Unique protein chains: 6
Unique Ligands	D6M

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

2JSE | pdb_00002jse

2NCI | pdb_00002nci

3LWT | pdb_00003lwt

3VFE | pdb_00003vfe

3W2D | pdb_00003w2d

4D8N | pdb_00004d8n

5Y66 | pdb_00005y66

5Y77 | pdb_00005y77

5Y7A | pdb_00005y7a

7DTY | pdb_00007dty

7DUQ | pdb_00007duq

7DUR | pdb_00007dur

7E14 | pdb_00007e14

7EVM | pdb_00007evm

7F16 | pdb_00007f16

7FIM | pdb_00007fim

7FIN | pdb_00007fin

7FIY | pdb_00007fiy

7MYN | pdb_00007myn

7MYO | pdb_00007myo

7V35 | pdb_00007v35

7V9L | pdb_00007v9l

7V9M | pdb_00007v9m

7VAB | pdb_00007vab

7VBH | pdb_00007vbh