RCSB PDB: Search

1DB2 \| pdb_00001db2	Download File View File

CRYSTAL STRUCTURE OF NATIVE PLASMINOGEN ACTIVATOR INHIBITOR-1

Nar, H., Bauer, M., Stassen, J.M., Lang, D., Gils, A., Declerck, P.

(2000) J Mol Biology 297: 683-695

Released	1999-11-10
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	PLASMINOGEN ACTIVATOR INHIBITOR-1 (protein)

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3EOX \| pdb_00003eox	Download File View File

High quality structure of cleaved PAI-1-stab

Dewilde, M., Declerck, P.J., Rabijns, A., Strelkov, S.V.

(2009) J Struct Biol 165: 126-132

Released	2009-02-17
Method	X-RAY DIFFRACTION 2.61 Å
Organisms	Homo sapiens
Macromolecule	Plasminogen activator inhibitor 1 (protein)

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3LW2 \| pdb_00003lw2	Download File View File

Mouse Plasminogen Activator Inhibitor-1 (PAI-1)

Dewilde, M., Van De Craen, B., Compernolle, G., Madsen, J.B., Strelkov, S.V., Gils, A., Declerck, P.J.

(2010) J Struct Biol 171: 95-101

Released	2010-04-07
Method	X-RAY DIFFRACTION 1.93 Å
Organisms	Mus musculus
Macromolecule	Plasminogen activator inhibitor 1 (protein)

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5HDO \| pdb_00005hdo	Download File View File

Crystal structure of a nanobody raised against urokinase-type plasminogen activator

Kromann-Hansen, T.

(2016) J Biological Chem 291: 15156-15168

Released	2016-06-01
Method	X-RAY DIFFRACTION 2.16 Å
Organisms	Camelus dromedarius
Macromolecule	Anti-HCV NS3/4A serine protease immoglobulin heavy chain (protein)
Unique Ligands	CL, SO4

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5HGG \| pdb_00005hgg	Download File View File

Crystal structure of uPA in complex with a camelid-derived antibody fragment

Yung, K.W.Y., Kromann-Hansen, T., Andreasen, P.A., Ngo, J.C.K.

(2016) J Biological Chem 291: 15156-15168

Released	2016-06-01
Method	X-RAY DIFFRACTION 1.97 Å
Organisms	Homo sapiens Vicugna pacos
Macromolecule	Camelid Derived Antibody Fragment, Nb4 (protein) Urokinase-type plasminogen activator (protein)
Unique Ligands	GOL, MES, SO4, TWN

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5HVF \| pdb_00005hvf	Download File View File

Crystal Structure of Thrombin-activatable Fibrinolysis Inhibitor in Complex with an Inhibitory Nanobody (VHH-i83)

Zhou, X., Weeks, S.D., Strelkov, S.V., Declerck, P.J.

(2016) J Thromb Haemost 14: 1629-1638

Released	2016-06-22
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Homo sapiens Vicugna pacos
Macromolecule	Carboxypeptidase B2 (protein) VHH-i83 (protein)
Unique Ligands	FLC, NAG, ZN
Unique branched monosaccharides	BMA, MAN, NAG

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5HVG \| pdb_00005hvg	Download File View File

Crystal Structure of Thrombin-activatable Fibrinolysis Inhibitor in Complex with an Inhibitory Nanobody (VHH-a204)

Zhou, X., Weeks, S.D., Strelkov, S.V., Declerck, P.J.

(2016) J Thromb Haemost 14: 1629-1638

Released	2016-06-22
Method	X-RAY DIFFRACTION 3.05 Å
Organisms	Homo sapiens Vicugna pacos
Macromolecule	Carboxypeptidase B2 (protein) VHH-a204 (protein)
Unique Ligands	ACT, NAG, ZN
Unique branched monosaccharides	BMA, MAN, NAG

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5HVH \| pdb_00005hvh	Download File View File

Crystal Structure of Thrombin-activatable Fibrinolysis Inhibitor in Complex with two Inhibitory Nanobodies

Zhou, X., Weeks, S.D., Strelkov, S.V., Declerck, P.J.

(2016) J Thromb Haemost 14: 1629-1638

Released	2016-06-22
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens Vicugna pacos
Macromolecule	Carboxypeptidase B2 (protein) VHH-a204 (protein) VHH-i83 (protein)
Unique Ligands	NAG, ZN
Unique branched monosaccharides	NAG

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5LHN \| pdb_00005lhn	Download File View File

The catalytic domain of murine urokinase-type plasminogen activator in complex with the allosteric inhibitory nanobody Nb7

Kromann-Hansen, T., Lange, E.L., Sorensen, H.P., Ghassabeh, G.H., Huang, M., Jensen, J.K., Muyldermans, S., Declerck, P., Andreasen, P.A.

(2017) Sci Rep 7: 3385-3385

Released	2017-06-28
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Mus musculus Vicugna pacos
Macromolecule	Camelid-Derived Antibody Fragment Nb7 (protein) Urokinase-type plasminogen activator (protein)
Unique Ligands	EDO, SO4

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5LHP \| pdb_00005lhp	Download File View File

The p-aminobenzamidine active site inhibited catalytic domain of murine urokinase-type plasminogen activator in complex with the allosteric inhibitory nanobody Nb7

Kromann-Hansen, T., Lange, E.L., Sorensen, H.P., Ghassabeh, G.H., Huang, M., Jensen, J.K., Muyldermans, S., Declerck, P.J., Andreasen, P.A.

(2017) Sci Rep 7: 3385-3385

Released	2017-06-28
Method	X-RAY DIFFRACTION 2.63 Å
Organisms	Mus musculus Vicugna pacos
Macromolecule	Camelid-Derived Antibody Fragment (protein) Urokinase-type plasminogen activator (protein)
Unique Ligands	EDO, PBZ, SO4

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5LHQ \| pdb_00005lhq	Download File View File

The EGR-cmk active site inhibited catalytic domain of murine urokinase-type plasminogen activator in complex with the allosteric inhibitory nanobody Nb7

Kromann-Hansen, T., Lange, E.L., Sorensen, H.P., Ghassabeh, G.H., Huang, M., Jensen, J.K., Muyldermans, S., Declerck, P.J., Andreasen, P.A.

(2017) Sci Rep 7: 3385-3385

Released	2017-06-28
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Mus musculus Vicugna pacos
Macromolecule	Camelid-Derived Antibody Fragment Nb7 (protein) Urokinase-type plasminogen activator (protein)
Unique Ligands	0GJ, EDO, SO4

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5LHR \| pdb_00005lhr	Download File View File

The catalytic domain of murine urokinase-type plasminogen activator in complex with the active site binding inhibitory nanobody Nb22

Kromann-Hansen, T., Lange, E.L., Sorensen, H.P., Ghassabeh, G.H., Huang, M., Jensen, J.K., Muyldermans, S., Declerck, P.J., Andreasen, P.A.

(2017) Sci Rep 7: 3385-3385

Released	2017-06-28
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Mus musculus Vicugna pacos
Macromolecule	Camelid-Derived Antibody Fragment Nb22 (protein) Urokinase-type plasminogen activator (protein)

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5LHS \| pdb_00005lhs	Download File View File

The ligand free catalytic domain of murine urokinase-type plasminogen activator

Kromann-Hansen, T., Lange, E.L., Sorensen, H.P., Ghassabeh, G.H., Huang, M., Jensen, J.K., Muyldermans, S., Declerck, P.J., Andreasen, P.A.

(2017) Sci Rep 7: 3385-3385

Released	2017-06-28
Method	X-RAY DIFFRACTION 3.047 Å
Organisms	Mus musculus
Macromolecule	Urokinase-type plasminogen activator (protein)
Unique Ligands	NI, SO4

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6GWN \| pdb_00006gwn	Download File View File

Crystal Structure of Stabilized Active Plasminogen Activator Inhibitor-1 (PAI-1-W175F) in Complex with Two Inhibitory Nanobodies (VHH-2g-42, VHH-2w-64)

Sillen, M., Weeks, S.D., Strelkov, S.V., Declerck, P.J.

(2020) J Thromb Haemost 18: 681-692

Released	2020-01-01
Method	X-RAY DIFFRACTION 2.03 Å
Organisms	Homo sapiens Vicugna pacos
Macromolecule	Plasminogen activator inhibitor 1 (protein) VHH-2g-42 (protein) VHH-2w-64 (protein)

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6GWP \| pdb_00006gwp	Download File View File

Crystal Structure of Stabilized Active Plasminogen Activator Inhibitor-1 (PAI-1-stab) in Complex with Two Inhibitory Nanobodies (VHH-2g-42, VHH-2w-64)

Sillen, M., Weeks, S.D., Strelkov, S.V., Declerck, P.J.

(2020) J Thromb Haemost 18: 681-692

Released	2020-01-01
Method	X-RAY DIFFRACTION 2.28 Å
Organisms	Homo sapiens Vicugna pacos
Macromolecule	Plasminogen Activator Inhibitor-1 (protein) VHH-2g-42 (protein) VHH-2w-64 (protein)

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6GWQ \| pdb_00006gwq	Download File View File

Crystal Structure of Stabilized Active Plasminogen Activator Inhibitor-1 (PAI-1-stab) in Complex with an Inhibitory Nanobody (VHH-2g-42)

Sillen, M., Weeks, S.D., Strelkov, S.V., Declerck, P.J.

(2020) J Thromb Haemost 18: 681-692

Released	2020-01-01
Method	X-RAY DIFFRACTION 2.32 Å
Organisms	Homo sapiens Vicugna pacos
Macromolecule	Plasminogen Activator Inhibitor-1 (protein) VHH-2g-42 (protein)

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6ZRV \| pdb_00006zrv	Download File View File

Crystal Structure of Stabilized Active Plasminogen Activator Inhibitor-1 (PAI-1-W175F) in Complex with an Inhibitory Nanobody (VHH-s-a93, Nb93)

Sillen, M., Weeks, S.D., Strelkov, S.V., Declerck, P.J.

(2020) Int J Mol Sci 21:

Released	2020-08-26
Method	X-RAY DIFFRACTION 1.88 Å
Organisms	Homo sapiens Vicugna pacos
Macromolecule	Plasminogen activator inhibitor 1 (protein) VHH-s-a93 (Nb93) (protein)

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7AQF \| pdb_00007aqf	Download File View File

Crystal Structure of Small Molecule Inhibitor TM5484 Bound to Stabilized Active Plasminogen Activator Inhibitor-1 (PAI-1-stab)

Sillen, M., Strelkov, S.V., Declerck, P.J.

(2021) Int J Mol Sci 22:

Released	2021-02-17
Method	X-RAY DIFFRACTION 1.77 Å
Organisms	Homo sapiens
Macromolecule	Plasminogen activator inhibitor 1 (protein)
Unique Ligands	RV2

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7AQG \| pdb_00007aqg	Download File View File

Crystal Structure of Small Molecule Inhibitor TM5484 Bound to Stabilized Active Plasminogen Activator Inhibitor-1 (PAI-1-W175F)

Sillen, M., Strelkov, S.V., Declerck, P.J.

(2021) Int J Mol Sci 22:

Released	2021-02-24
Method	X-RAY DIFFRACTION 2.27 Å
Organisms	Homo sapiens Vicugna pacos
Macromolecule	Plasminogen activator inhibitor 1 (protein) VHH-2g-42 (Nb42) (protein) VHH-2w-64 (Nb64) (protein)
Unique Ligands	RV2

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7AQL \| pdb_00007aql	Download File View File

Crystal Structure of an Anti-Plasminogen Activator Inhibitor-1 (PAI-1) scFv antibody fragment (scFv-33H1F7)

Sillen, M., Weeks, S.D., Strelkov, S.V., Declerck, P.J.

To be published

Released	2021-11-03
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Mus musculus
Macromolecule	scFv-33H1F7 (protein)
Unique Ligands	SO4

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9PAI \| pdb_00009pai	Download File View File

CLEAVED SUBSTRATE VARIANT OF PLASMINOGEN ACTIVATOR INHIBITOR-1

Aertgeerts, K., De Bondt, H.L., De Ranter, C.J., Declerck, P.J.

(1995) Nat Struct Biol 2: 891-897

Released	1999-03-19
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (PLASMINOGEN ACTIVATOR INHIBITOR-1) residues 19-364 (protein) PROTEIN (PLASMINOGEN ACTIVATOR INHIBITOR-1) residues 365-397 (protein)

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Experimental Method

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Refinement Resolution (Å)

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Enzyme Classification Name

Symmetry Type

SCOP Classification

1DB2 | pdb_00001db2

3EOX | pdb_00003eox

3LW2 | pdb_00003lw2

5HDO | pdb_00005hdo

5HGG | pdb_00005hgg

5HVF | pdb_00005hvf

5HVG | pdb_00005hvg

5HVH | pdb_00005hvh

5LHN | pdb_00005lhn

5LHP | pdb_00005lhp

5LHQ | pdb_00005lhq

5LHR | pdb_00005lhr

5LHS | pdb_00005lhs

6GWN | pdb_00006gwn

6GWP | pdb_00006gwp

6GWQ | pdb_00006gwq

6ZRV | pdb_00006zrv

7AQF | pdb_00007aqf

7AQG | pdb_00007aqg

7AQL | pdb_00007aql

9PAI | pdb_00009pai