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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Kim, J.W."

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Search Summary

This query matches 75 Structures.

Refinements

Structure Determination Methodology

experimental (75)

Scientific Name of Source Organism

	Homo sapiens (43)
	Mus musculus (10)
	synthetic construct (9)
	Klebsiella pneumoniae (8)
	Drosophila melanogaster (7)
	Escherichia coli K-12 (6)
	Staphylococcus aureus (5)
	Enterobacteria phage T6 (3)
	Severe acute respiratory syndrome coronavirus 2 (2)
	Vibrio vulnificus CMCP6 (2)

More...

Taxonomy

	Eukaryota (57)
	Bacteria (29)
	other sequences (9)
	Duplodnaviria (5)
	Riboviria (2)

Experimental Method

	X-RAY DIFFRACTION (48)
	ELECTRON MICROSCOPY (27)

Polymer Entity Type

	Protein (75)
	RNA (6)

Refinement Resolution (Å)

	1.5 - 2.0 (13)
	2.0 - 2.5 (15)
	2.5 - 3.0 (19)
	3.0 - 3.5 (17)
	3.5 - 4.0 (11)

Release Date

	2000 - 2004 (1)
	2005 - 2009 (1)
	2010 - 2014 (3)
	2015 - 2019 (26)
	2020 - 2024 (33)
	2025 - 2029 (11)

Enzyme Classification Name

	Translocases (9)
	Hydrolases (7)
	Lyases (5)
	Oxidoreductases (3)
	Transferases (1)

Membrane Protein Annotation

	PDBTM (27)
	MemProtMD (13)
	OPM (9)
	mpstruc (7)

Symmetry Type

	Asymmetric (33)
	Cyclic (39)
	Dihedral (5)

SCOP Classification

	All beta proteins (20)
	Alpha and beta proteins (a/b) (5)
	All alpha proteins (5)
	Artifacts (4)
	Alpha and beta proteins (a+b) (2)

AllSelected

1 to 25 of 75 Structures

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1SMA \| pdb_00001sma	Download File View File

CRYSTAL STRUCTURE OF A MALTOGENIC AMYLASE

Kim, J.S., Cha, S.S., Oh, B.H.

(1999) J Biological Chem 274: 26279-26286

Released	2000-04-26
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Thermus sp. IM6501
Macromolecule	MALTOGENIC AMYLASE (protein)

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2QMQ \| pdb_00002qmq	Download File View File

Crystal structure of a n-myc downstream regulated 2 protein (ndrg2, syld, ndr2, ai182517, au040374) from mus musculus at 1.70 A resolution

Joint Center for Structural Genomics (JCSG)

(2011) J Biological Chem 286: 12450-12460

Released	2007-09-04
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Mus musculus
Macromolecule	Protein NDRG2 (protein)
Unique Ligands	2PE, BEZ, MG

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2XMQ \| pdb_00002xmq	Download File View File

Crystal structure of human NDRG2 protein provides insight into its role as a tumor suppressor

Hwang, J., Kim, Y., Lee, H., Kim, M.H.

(2011) J Biological Chem 286: 12450

Released	2011-01-19
Method	X-RAY DIFFRACTION 2.81 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN NDRG2 (protein)
Unique Ligands	ACT

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2XMR \| pdb_00002xmr	Download File View File

Crystal structure of human NDRG2 protein provides insight into its role as a tumor suppressor

Hwang, J., Kim, Y., Lee, H., Kim, M.H.

(2011) J Biological Chem 286: 12450

Released	2011-01-19
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN NDRG2 (protein)
Unique Ligands	ACT, CA, GOL

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2XMS \| pdb_00002xms	Download File View File

Crystal structure of human NDRG2 protein provides insight into its role as a tumor suppressor

Hwang, J., Kim, Y., Lee, H., Kim, M.H.

(2011) J Biological Chem 286: 12450

Released	2011-01-19
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN NDRG2 (protein)
Unique Ligands	CL, IMD

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5GRU \| pdb_00005gru	Download File View File

Structure of mono-specific diabody

Kim, J.H., Song, D.H., Youn, S.J., Cho, G., Lee, H., Lee, J.O.

(2016) Sci Rep 6: 34515-34515

Released	2016-10-12
Method	X-RAY DIFFRACTION 1.955 Å
Organisms	Escherichia coli K-12 Homo sapiens Mus musculus
Macromolecule	Maltose-binding periplasmic protein (protein) diabody protein (protein)

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5GRV \| pdb_00005grv	Download File View File

Crystal structure of homo-specific diabody

Kim, J.H., Song, D.H., Youn, S.J., Kim, J.W., Cho, G., Lee, H., Lee, J.O.

(2016) Sci Rep 6: 34515-34515

Released	2016-10-12
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	homo-specific diabody heavy chain (protein) homo-specific diabody light chain (protein)

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5GRW \| pdb_00005grw	Download File View File

Crystal structure of homo-specific diabody

Kim, J.H., Song, D.H., Youn, S.J., Kim, J.W., Cho, G., Lee, H., Lee, J.O.

(2016) Sci Rep 6: 34515-34515

Released	2016-10-12
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	homo-specific diabody protein (protein)

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5GRX \| pdb_00005grx	Download File View File

Crystal structure of disulfide-bonded diabody

Kim, J.H., Song, D.H., Youn, S.J., Kim, J.W., Cho, G., Lee, H., Lee, J.O.

(2016) Sci Rep 6: 34515-34515

Released	2016-10-12
Method	X-RAY DIFFRACTION 2.002 Å
Organisms	Homo sapiens
Macromolecule	diabody protein (protein)

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5GRY \| pdb_00005gry	Download File View File

Crystal structure of disulfide-bonded diabody

Kim, J.H., Song, D.H., Youn, S.J., Kim, J.W., Cho, G., Lee, H., Lee, J.O.

(2016) Sci Rep 6: 34515-34515

Released	2016-10-12
Method	X-RAY DIFFRACTION 1.639 Å
Organisms	Homo sapiens
Macromolecule	diabody (protein)

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5GRZ \| pdb_00005grz	Download File View File

Crystal structure of disulfide-bonded diabody

Kim, J.H., Song, D.H., Youn, S.J., Kim, J.W., Cho, G., Lee, H., Lee, J.O.

(2016) Sci Rep 6: 34515-34515

Released	2016-10-12
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	diabody (protein)

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5GS0 \| pdb_00005gs0	Download File View File

Crystal structure of the complex of TLR3 and bi-specific diabody

Kim, J.H., Song, D.H., Youn, S.J., Kim, J.W., Cho, G., Lee, H., Lee, J.O.

(2016) Sci Rep 6: 34515-34515

Released	2016-10-12
Method	X-RAY DIFFRACTION 3.275 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	Toll-like receptor 3 (protein) heavy chain (anti-Lid) (protein) heavy chain (anti-TLR3) (protein) light chain (anti-Lid) (protein) light chain (anti-TLR3) (protein)
Unique Ligands	BMA, MAN, NAG

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5GS1 \| pdb_00005gs1	Download File View File

Crystal structure of homo-specific diabody

Kim, J.H., Song, D.H., Youn, S.J., Kim, J.W., Cho, G., Lee, H., Lee, J.O.

(2016) Sci Rep 6: 34515-34515

Released	2016-10-12
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	diabody (protein) heavy chain (protein) light chain (protein)

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5GS2 \| pdb_00005gs2	Download File View File

Crystal structure of diabody complex with repebody and MBP

Kim, J.H., Song, D.H., Youn, S.J., Kim, J.W., Cho, G., Lee, H., Lee, J.O.

(2016) Sci Rep 6: 34515-34515

Released	2016-10-12
Method	X-RAY DIFFRACTION 3.592 Å
Organisms	Escherichia coli Escherichia coli K-12 Homo sapiens Mus musculus
Macromolecule	Maltose-binding periplasmic protein (protein) anti-MBP (protein) anti-repebody (protein) repebody (protein)

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5GS3 \| pdb_00005gs3	Download File View File

Crystal structure of diabody

Kim, J.H., Song, D.H., Youn, S.J., Kim, J.W., Cho, G., Lee, H., Lee, J.O.

(2016) Sci Rep 6: 34515-34515

Released	2016-10-12
Method	X-RAY DIFFRACTION 1.698 Å
Organisms	Homo sapiens
Macromolecule	diabody protein (protein)

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5X9R \| pdb_00005x9r	Download File View File

Structural insights into the elevator-like mechanism of the sodium/citrate symporter CitS

Jin, M.S., Kim, J.W., Kim, S., Kim, S., Lee, H., Lee, J.-O.

(2017) Sci Rep 7: 2548-2548

Released	2017-06-14
Method	X-RAY DIFFRACTION 3.98 Å
Organisms	Klebsiella pneumoniae
Macromolecule	Citrate-sodium symporter (protein)
Unique Ligands	BGC, FLC

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5XAR \| pdb_00005xar	Download File View File

Structural insights into the elevator-like mechanism of the sodium/citrate symporter CitS

Jin, M.S., Kim, J.W., Kim, S., Kim, S., Lee, H., Lee, J.-O.

(2017) Sci Rep 7: 2548-2548

Released	2017-06-14
Method	X-RAY DIFFRACTION 3.62 Å
Organisms	Klebsiella pneumoniae
Macromolecule	Citrate-sodium symporter (protein)
Unique Ligands	BOG, NA

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5XAS \| pdb_00005xas	Download File View File

Structural insights into the elevator-like mechanism of the sodium/citrate symporter CitS

Jin, M.S., Kim, J.W., Kim, S., Kim, S., Lee, H., Lee, J.-O.

(2017) Sci Rep 7: 2548-2548

Released	2017-06-14
Method	X-RAY DIFFRACTION 3.47 Å
Organisms	Klebsiella pneumoniae
Macromolecule	Citrate-sodium symporter (protein)
Unique Ligands	BOG, FLC, NA

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5XAT \| pdb_00005xat	Download File View File

Structural insights into the elevator-like mechanism of the sodium/citrate symporter CitS

Jin, M.S., Kim, J.W., Kim, S., Kim, S., Lee, H., Lee, J.-O.

(2017) Sci Rep 7: 2548-2548

Released	2017-06-14
Method	X-RAY DIFFRACTION 3.76 Å
Organisms	Klebsiella pneumoniae
Macromolecule	Citrate-sodium symporter (protein)
Unique Ligands	BOG, FLC, NA

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5Y7H \| pdb_00005y7h	Download File View File

Crystal structure of human DPP4 in complex with inhibitor3

Lee, H.K., Kim, E.E.

(2017) Biochem Biophys Res Commun 494: 452-459

Released	2019-03-20
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	Dipeptidyl peptidase 4 (protein)
Unique Ligands	8O3

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5Y7J \| pdb_00005y7j	Download File View File

Crystal structure of human DPP4 in complex with inhibitor2

Lee, H.K., Kim, E.E.

(2017) Biochem Biophys Res Commun 494: 452-459

Released	2019-03-20
Method	X-RAY DIFFRACTION 2.521 Å
Organisms	Homo sapiens
Macromolecule	Dipeptidyl peptidase 4 (protein)
Unique Ligands	8OL

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5Y7K \| pdb_00005y7k	Download File View File

Crystal structure of human DPP4 in complex with inhibitor1

Lee, H.K., Kim, E.E.

(2017) Biochem Biophys Res Commun 494: 452-459

Released	2019-03-20
Method	X-RAY DIFFRACTION 2.512 Å
Organisms	Homo sapiens
Macromolecule	Dipeptidyl peptidase 4 (protein)
Unique Ligands	8VU

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6JDK \| pdb_00006jdk	Download File View File

Crystal structure of Baeyer-Villiger monooxygenase from Parvibaculum lavamentivorans

Kim, J.-S., Nguyen, T.D.

(2019) Biochem Biophys Res Commun 512: 564-570

Released	2019-04-10
Method	X-RAY DIFFRACTION 2.495 Å
Organisms	Parvibaculum lavamentivorans DS-1
Macromolecule	Baeyer-Villiger monooxygenase (protein)
Unique Ligands	FAD, MG

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6K3M \| pdb_00006k3m	Download File View File

Application of anti-helix antibodies in protein structure determination (8189-3LRH)

Lee, J.O., Jin, M.S., Kim, J.W., Kim, S., Lee, H., Cho, G.Y.

(2019) Proc Natl Acad Sci U S A 116: 17786-17791

Released	2019-08-14
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens Staphylococcus aureus
Macromolecule	3LRH intrabody (protein) SpA IgG-binding domain protein,Protein A (protein)

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6K64 \| pdb_00006k64	Download File View File

Application of anti-helix antibodies in protein structure determination (8188-3LRH)

Lee, J.O., Jin, M.S., Kim, J.W., Kim, S., Lee, H., Cho, G.Y.

(2019) Proc Natl Acad Sci U S A 116: 17786-17791

Released	2019-08-14
Method	X-RAY DIFFRACTION 1.933 Å
Organisms	Homo sapiens Staphylococcus aureus
Macromolecule	3LRH intrabody (protein) Protein A (protein)

1 to 25 of 75 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1SMA | pdb_00001sma

2QMQ | pdb_00002qmq

2XMQ | pdb_00002xmq

2XMR | pdb_00002xmr

2XMS | pdb_00002xms

5GRU | pdb_00005gru

5GRV | pdb_00005grv

5GRW | pdb_00005grw

5GRX | pdb_00005grx

5GRY | pdb_00005gry

5GRZ | pdb_00005grz

5GS0 | pdb_00005gs0

5GS1 | pdb_00005gs1

5GS2 | pdb_00005gs2

5GS3 | pdb_00005gs3

5X9R | pdb_00005x9r

5XAR | pdb_00005xar

5XAS | pdb_00005xas

5XAT | pdb_00005xat

5Y7H | pdb_00005y7h

5Y7J | pdb_00005y7j

5Y7K | pdb_00005y7k

6JDK | pdb_00006jdk

6K3M | pdb_00006k3m

6K64 | pdb_00006k64