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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Kiefer, J.R."

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Search Summary

This query matches 18 Structures.

Refinements

Structure Determination Methodology

experimental (18)

Scientific Name of Source Organism

	Homo sapiens (6)
	Puccinia graminis f. sp. tritici (4)
	Catharanthus roseus (3)
	Lavandula lanata (3)
	Triticum monococcum (3)
	Zymomonas mobilis (2)

Taxonomy

	Eukaryota (16)
	Bacteria (2)

Experimental Method

	ELECTRON MICROSCOPY (9)
	X-RAY DIFFRACTION (9)

Polymer Entity Type

Protein (18)

Refinement Resolution (Å)

	1.5 - 2.0 (2)
	2.0 - 2.5 (5)
	2.5 - 3.0 (3)
	3.0 - 3.5 (6)
	3.5 - 4.0 (2)

Release Date

	2015 - 2019 (6)
	2020 - 2024 (12)

Enzyme Classification Name

	Oxidoreductases (5)
	Hydrolases (6)
	Transferases (3)

Membrane Protein Annotation

	OPM (6)
	PDBTM (6)
	mpstruc (6)
	MemProtMD (2)

Symmetry Type

	Asymmetric (9)
	Cyclic (7)
	Dihedral (2)

SCOP Classification

Alpha and beta proteins (a/b) (3)

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1 to 18 of 18 Structures

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5DBF \| pdb_00005dbf	Download File View File

Crystal Structure of Iridoid Synthase from Cantharanthus roseus in complex with NADPH

Hu, Y.M., Liu, W.D., Zheng, Y.Y., Xu, Z.X., Ko, T.P., Chen, C.C., Guo, R.T.

(2015) Angew Chem Int Ed Engl 54: 15478-15482

Released	2015-11-04
Method	X-RAY DIFFRACTION 2 Å
Organisms	Catharanthus roseus
Macromolecule	Iridoid synthase (protein)
Unique Ligands	NDP

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5DBG \| pdb_00005dbg	Download File View File

Crystal Structure of Iridoid Synthase from Cantharanthus roseus in complex with NAD+

Liu, W.D., Hu, Y.M., Zheng, Y.Y., Xu, Z.X., Ko, T.P., Chen, C.C., Guo, R.T.

(2015) Angew Chem Int Ed Engl 54: 15478-15482

Released	2015-11-04
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Catharanthus roseus
Macromolecule	Iridoid synthase (protein)
Unique Ligands	NAD

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5DBI \| pdb_00005dbi	Download File View File

Crystal Structure of Iridoid Synthase from Cantharanthus roseus in complex with NAD+ and 10-oxogeranial

Hu, Y.M., Liu, W.D., Zheng, Y.Y., Xu, Z.X., Ko, T.P., Chen, C.C., Guo, R.T.

(2015) Angew Chem Int Ed Engl 54: 15478-15482

Released	2015-11-04
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Catharanthus roseus
Macromolecule	Iridoid synthase (protein)
Unique Ligands	NAD, XOG

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5HC6 \| pdb_00005hc6	Download File View File

Crystal structure of lavandulyl diphosphate synthase from Lavandula x intermedia in apo form

Liu, M.X., Liu, W.D., Gao, J., Zheng, Y.Y., Chen, C.C., Guo, R.T.

(2016) Angew Chem Int Ed Engl 55: 4721-4724

Released	2016-03-02
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Lavandula lanata
Macromolecule	prenyltransference for protein (protein)
Unique Ligands	SO4

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5HC7 \| pdb_00005hc7	Download File View File

Crystal structure of lavandulyl diphosphate synthase from Lavandula x intermedia in complex with S-thiolo-isopentenyldiphosphate

Liu, M.X., Liu, W.D., Gao, J., Zheng, Y.Y., Chen, C.C., Guo, R.T.

(2016) Angew Chem Int Ed Engl 55: 4721-4724

Released	2016-03-02
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Lavandula lanata
Macromolecule	prenyltransference for protein (protein)
Unique Ligands	DST, MG

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5HC8 \| pdb_00005hc8	Download File View File

Crystal structure of lavandulyl diphosphate synthase from Lavandula x intermedia in complex with dimethylallyl diphosphate

Liu, M.X., Liu, W.D., Gao, J., Zheng, Y.Y., Chen, C.C., Guo, R.T.

(2016) Angew Chem Int Ed Engl 55: 4721-4724

Released	2016-03-02
Method	X-RAY DIFFRACTION 1.87 Å
Organisms	Lavandula lanata
Macromolecule	prenyltransference for protein (protein)
Unique Ligands	61G, ISY, MG, PIS, SO4

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7XDS \| pdb_00007xds	Download File View File

Crystal structure of wheat stem rust effector AvrSr35

Ouyang, S.Y., Zhao, Y.B.

(2022) Sci Adv 8: eabq5108-eabq5108

Released	2022-09-28
Method	X-RAY DIFFRACTION 2.06 Å
Organisms	Puccinia graminis f. sp. tritici
Macromolecule	AvrSr35 (protein)

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7XE0 \| pdb_00007xe0	Download File View File

Cryo-EM structure of plant NLR Sr35 resistosome

Ouyang, S.Y., Zhao, Y.B., Li, Z.K., Liu, M.X.

(2022) Sci Adv 8: eabq5108-eabq5108

Released	2022-09-28
Method	ELECTRON MICROSCOPY 3.33 Å
Organisms	Puccinia graminis f. sp. tritici Triticum monococcum
Macromolecule	AvrSr35 (protein) Sr35 (protein)
Unique Ligands	ATP

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7XHL \| pdb_00007xhl	Download File View File

Complex structure of a Glucose 6-Phosphate Dehydrogenase from Zymomonas mobilis

Meng, D.D., Liu, M.X., Liu, W.D., You, C.

(2023) ACS Catal 13: 1983-1998

Released	2023-04-12
Method	X-RAY DIFFRACTION 3.25 Å
Organisms	Zymomonas mobilis
Macromolecule	Glucose 6-Phosphate Dehydrogenase (protein)
Unique Ligands	NMN

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7XHP \| pdb_00007xhp	Download File View File

Structure of a Glucose 6-Phosphate Dehydrogenase from Zymomonas mobilis

Meng, D.D., Liu, M.X., Liu, W.D., You, C.

(2023) ACS Catal 13: 1983-1998

Released	2023-02-22
Method	X-RAY DIFFRACTION 2.78 Å
Organisms	Zymomonas mobilis
Macromolecule	Glucose 6-Phosphate Dehydrogenase (protein)

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7XVG \| pdb_00007xvg	Download File View File

Cryo-EM structure of binary complex of plant NLR Sr35 and effector AvrSr35

Ouyang, S.Y., Zhao, Y.B., Li, Z.K., Liu, M.X.

(2022) Sci Adv 8: eabq5108-eabq5108

Released	2022-09-28
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Puccinia graminis f. sp. tritici Triticum monococcum
Macromolecule	AvrSr35 (protein) Sr35 (protein)

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7XX2 \| pdb_00007xx2	Download File View File

Cryo-EM structure of Sr35 resistosome induced by AvrSr35 R381A

Ouyang, S.Y., Zhao, Y.B., Li, Z.K., Liu, M.X.

(2022) Sci Adv 8: eabq5108-eabq5108

Released	2022-11-02
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Puccinia graminis f. sp. tritici Triticum monococcum
Macromolecule	AvrSr35 (protein) CNL9 (protein)
Unique Ligands	ATP

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8G59 \| pdb_00008g59	Download File View File

Cryo-EM structure of the TUG891 bound GPR120-Giq complex

Mao, C., Xiao, P., Tao, X., Qin, J., He, Q., Zhang, C., Yu, X., Zhang, Y., Sun, J.

(2023) Science 380: eadd6220-eadd6220

Released	2023-03-08
Method	ELECTRON MICROSCOPY 2.64 Å
Organisms	Homo sapiens
Macromolecule	Free fatty acid receptor 4 (protein) Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2 (protein) Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 (protein) Guanine nucleotide-binding protein G(q) subunit alpha (protein) scFv16 (protein)
Unique Ligands	YN9

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8ID3 \| pdb_00008id3	Download File View File

Cryo-EM structure of the 9-hydroxystearic acid bound GPR120-Gi complex

Mao, C., Xiao, P., Tao, X., Qin, J., He, Q., Zhang, C., Yu, X., Zhang, Y., Sun, J.

(2023) Science 380: eadd6220-eadd6220

Released	2023-03-15
Method	ELECTRON MICROSCOPY 3.1 Å
Organisms	Homo sapiens
Macromolecule	Free fatty acid receptor 4 (protein) Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2 (protein) Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 (protein) Guanine nucleotide-binding protein G(i) subunit alpha-1 (protein) scFv16 (protein)
Unique Ligands	7NR

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8ID4 \| pdb_00008id4	Download File View File

Cryo-EM structure of the linoleic acid bound GPR120-Gi complex

Mao, C., Xiao, P., Tao, X., Qin, J., He, Q., Zhang, C., Yu, X., Zhang, Y., Sun, J.

(2023) Science 380: eadd6220-eadd6220

Released	2023-03-15
Method	ELECTRON MICROSCOPY 3.1 Å
Organisms	Homo sapiens
Macromolecule	Free fatty acid receptor 4 (protein) Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2 (protein) Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 (protein) Guanine nucleotide-binding protein G(i) subunit alpha-1 (protein) scFv16 (protein)
Unique Ligands	EIC

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8ID6 \| pdb_00008id6	Download File View File

Cryo-EM structure of the oleic acid bound GPR120-Gi complex

Mao, C., Xiao, P., Tao, X., Qin, J., He, Q., Zhang, C., Yu, X., Zhang, Y., Sun, J.

(2023) Science 380: eadd6220-eadd6220

Released	2023-03-15
Method	ELECTRON MICROSCOPY 2.8 Å
Organisms	Homo sapiens
Macromolecule	Free fatty acid receptor 4 (protein) Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2 (protein) Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 (protein) Guanine nucleotide-binding protein G(i) subunit alpha-1 (protein) scFv16 (protein)
Unique Ligands	OLA

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8ID8 \| pdb_00008id8	Download File View File

Cryo-EM structure of the TUG891 bound GPR120-Gi complex

Mao, C., Xiao, P., Tao, X., Qin, J., He, Q., Zhang, C., Yu, X., Zhang, Y., Sun, J.

(2023) Science 380: eadd6220-eadd6220

Released	2023-03-15
Method	ELECTRON MICROSCOPY 3 Å
Organisms	Homo sapiens
Macromolecule	Free fatty acid receptor 4 (protein) Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2 (protein) Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 (protein) Guanine nucleotide-binding protein G(i) subunit alpha-1 (protein) scFv16 (protein)
Unique Ligands	YN9

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8ID9 \| pdb_00008id9	Download File View File

Cryo-EM structure of the eicosapentaenoic acid bound GPR120-Gi complex

Mao, C., Xiao, P., Tao, X., Qin, J., He, Q., Zhang, C., Yu, X., Zhang, Y., Sun, J.

(2023) Science 380: eadd6220-eadd6220

Released	2023-03-15
Method	ELECTRON MICROSCOPY 3 Å
Organisms	Homo sapiens
Macromolecule	Free fatty acid receptor 4 (protein) Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2 (protein) Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 (protein) Guanine nucleotide-binding protein G(i) subunit alpha-1 (protein) scFv16 (protein)
Unique Ligands	EPA

1 to 18 of 18 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

5DBF | pdb_00005dbf

Crystal Structure of Iridoid Synthase from Cantharanthus roseus in complex with NADPH

5DBG | pdb_00005dbg

Crystal Structure of Iridoid Synthase from Cantharanthus roseus in complex with NAD+

5DBI | pdb_00005dbi

Crystal Structure of Iridoid Synthase from Cantharanthus roseus in complex with NAD+ and 10-oxogeranial

5HC6 | pdb_00005hc6

Crystal structure of lavandulyl diphosphate synthase from Lavandula x intermedia in apo form

5HC7 | pdb_00005hc7

Crystal structure of lavandulyl diphosphate synthase from Lavandula x intermedia in complex with S-thiolo-isopentenyldiphosphate

5HC8 | pdb_00005hc8

Crystal structure of lavandulyl diphosphate synthase from Lavandula x intermedia in complex with dimethylallyl diphosphate

7XDS | pdb_00007xds

Crystal structure of wheat stem rust effector AvrSr35

7XE0 | pdb_00007xe0

Cryo-EM structure of plant NLR Sr35 resistosome

7XHL | pdb_00007xhl

Complex structure of a Glucose 6-Phosphate Dehydrogenase from Zymomonas mobilis

7XHP | pdb_00007xhp

Structure of a Glucose 6-Phosphate Dehydrogenase from Zymomonas mobilis

7XVG | pdb_00007xvg

Cryo-EM structure of binary complex of plant NLR Sr35 and effector AvrSr35

7XX2 | pdb_00007xx2

Cryo-EM structure of Sr35 resistosome induced by AvrSr35 R381A

8G59 | pdb_00008g59

Cryo-EM structure of the TUG891 bound GPR120-Giq complex

8ID3 | pdb_00008id3

Cryo-EM structure of the 9-hydroxystearic acid bound GPR120-Gi complex

8ID4 | pdb_00008id4

Cryo-EM structure of the linoleic acid bound GPR120-Gi complex

8ID6 | pdb_00008id6

Cryo-EM structure of the oleic acid bound GPR120-Gi complex

8ID8 | pdb_00008id8

Cryo-EM structure of the TUG891 bound GPR120-Gi complex

8ID9 | pdb_00008id9

Cryo-EM structure of the eicosapentaenoic acid bound GPR120-Gi complex

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

5DBF | pdb_00005dbf

5DBG | pdb_00005dbg

5DBI | pdb_00005dbi

5HC6 | pdb_00005hc6

5HC7 | pdb_00005hc7

5HC8 | pdb_00005hc8

7XDS | pdb_00007xds

7XE0 | pdb_00007xe0

7XHL | pdb_00007xhl

7XHP | pdb_00007xhp

7XVG | pdb_00007xvg

7XX2 | pdb_00007xx2

8G59 | pdb_00008g59

8ID3 | pdb_00008id3

8ID4 | pdb_00008id4

8ID6 | pdb_00008id6

8ID8 | pdb_00008id8

8ID9 | pdb_00008id9