RCSB PDB: Search

5TUQ \| pdb_00005tuq	Download File View File

Crystal Structure of a 6-Cyclohexylmethyl-3-hydroxypyrimidine-2,4-dione Inhibitor in Complex with HIV Reverse Transcriptase

Kirby, K.A., Sarafianos, S.G.

(2017) Eur J Med Chem 128: 168-179

Released	2017-06-28
Method	X-RAY DIFFRACTION 2.705 Å
Organisms	Human immunodeficiency virus type 1 BH10
Macromolecule	HIV-1 REVERSE TRANSCRIPTASE (protein)
Unique Ligands	J63, MG

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5UV5 \| pdb_00005uv5	Download File View File

Crystal Structure of a 2-Hydroxyisoquinoline-1,3-dione RNase H Active Site Inhibitor with Multiple Binding Modes to HIV Reverse Transcriptase

Kirby, K.A., Sarafianos, S.G.

(2017) Antimicrob Agents Chemother 61:

Released	2017-08-16
Method	X-RAY DIFFRACTION 3 Å
Organisms	Human immunodeficiency virus type 1 BH10
Macromolecule	Reverse transcriptase/ribonuclease H (protein) p51 RT (protein)
Unique Ligands	MN, Y55

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6AOC \| pdb_00006aoc	Download File View File

Crystal Structure of an N-Hydroxythienopyrimidine-2,4-dione RNase H Active Site Inhibitor with Multiple Binding Modes to HIV Reverse Transcriptase

Kirby, K.A., Sarafianos, S.G.

(2017) Eur J Med Chem 141: 149-161

Released	2018-08-08
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Human immunodeficiency virus type 1 BH10
Macromolecule	Reverse transcriptase/ribonuclease H (protein) p51 RT (protein)
Unique Ligands	EDO, MN, PGE, ZW2

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7LAD \| pdb_00007lad	Download File View File

Clobetasol propionate bound to CYP3A5

Buchman, C.D., Miller, D., Wang, J., Jayaraman, S., Chen, T.

(2021) J Am Chem Soc 143: 18467-18480

Released	2021-10-27
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Homo sapiens
Macromolecule	Cytochrome P450 3A5 (protein)
Unique Ligands	HEM, XRD

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8E3N \| pdb_00008e3n	Download File View File

Crystal structure of pregnane X receptor ligand binding domain complexed with rifamycin S

Huber, A.D., Poudel, S., Seetharaman, J., Miller, D.J., Lin, W., Chen, T.

(2023) Proc Natl Acad Sci U S A 120: e2217804120-e2217804120

Released	2023-03-15
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Homo sapiens
Macromolecule	Nuclear receptor subfamily 1 group I member 2 (protein)
Unique Ligands	VA0

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8EQZ \| pdb_00008eqz	Download File View File

Crystal structure of pregnane X receptor ligand binding domain complexed with T0901317 analog T0-C6

Huber, A.D., Poudel, S., Seetharaman, J., Miller, D.J., Lin, W., Li, Y., Chen, T.

(2023) Proc Natl Acad Sci U S A 120: e2217804120-e2217804120

Released	2023-03-15
Method	X-RAY DIFFRACTION 2.37 Å
Organisms	Homo sapiens
Macromolecule	Nuclear receptor subfamily 1 group I member 2 (protein)
Unique Ligands	WQB

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8F5Y \| pdb_00008f5y	Download File View File

Crystal structure of pregnane X receptor ligand binding domain complexed with JQ1

Huber, A.D., Poudel, S., Seetharaman, J., Miller, D.J., Chen, T.

(2024) Nucleic Acids Res 52: 1661-1676

Released	2024-02-21
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Homo sapiens
Macromolecule	Nuclear receptor coactivator 1 (protein) Nuclear receptor subfamily 1 group I member 2 (protein)
Unique Ligands	JQ1

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8FPE \| pdb_00008fpe	Download File View File

Crystal structure of pregnane X receptor ligand binding domain complexed with T0901317 analog T0-BP

Huber, A.D., Poudel, S., Seetharaman, J., Miller, D.J., Lin, W., Li, Y., Chen, T.

(2023) Proc Natl Acad Sci U S A 120: e2217804120-e2217804120

Released	2023-03-15
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Nuclear receptor subfamily 1 group I member 2 (protein)
Unique Ligands	Y5B

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8SVN \| pdb_00008svn	Download File View File

Crystal structure of the apo form of pregnane X receptor ligand binding domain

Garcia-Maldonado, E., Huber, A.D., Nithianantham, S., Miller, D.J., Chen, T.

(2024) Nat Commun 15: 4054-4054

Released	2024-05-15
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Pregnane X receptor ligand binding domain fused to SRC-1 coactivator peptide (protein)

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8SVO \| pdb_00008svo	Download File View File

Crystal structure of pregnane X receptor ligand binding domain in complex with SJPYT-310

Garcia-Maldonado, E., Huber, A.D., Nithianantham, S., Miller, D.J., Chen, T.

(2024) Nat Commun 15: 4054-4054

Released	2024-05-15
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Homo sapiens
Macromolecule	Pregnane X receptor ligand binding domain fused to SRC-1 coactivator peptide (protein)
Unique Ligands	DMS, WSO

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8SVP \| pdb_00008svp	Download File View File

Crystal structure of pregnane X receptor ligand binding domain in complex with SJPYT-278

Garcia-Maldonado, E., Huber, A.D., Nithianantham, S., Miller, D.J., Chen, T.

(2024) Nat Commun 15: 4054-4054

Released	2024-05-15
Method	X-RAY DIFFRACTION 3.32 Å
Organisms	Homo sapiens
Macromolecule	Pregnane X receptor ligand binding domain fused to SRC-1 coactivator peptide (protein)
Unique Ligands	WSX, YGO

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8SVQ \| pdb_00008svq	Download File View File

Crystal structure of pregnane X receptor ligand binding domain in complex with SJPYT-312

Garcia-Maldonado, E., Huber, A.D., Nithianantham, S., Miller, D.J., Chen, T.

(2024) Nat Commun 15: 4054-4054

Released	2024-05-15
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Homo sapiens
Macromolecule	Pregnane X receptor ligand binding domain fused to SRC-1 coactivator peptide (protein)
Unique Ligands	DMS, WSX

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8SVR \| pdb_00008svr	Download File View File

Crystal structure of pregnane X receptor ligand binding domain in complex with SJPYT-326

Garcia-Maldonado, E., Huber, A.D., Nithianantham, S., Miller, D.J., Chen, T.

(2024) Nat Commun 15: 4054-4054

Released	2024-05-15
Method	X-RAY DIFFRACTION 2.92 Å
Organisms	Homo sapiens
Macromolecule	Pregnane X receptor ligand binding domain fused to SRC-1 coactivator peptide (protein)
Unique Ligands	DMS, WT1

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8SVS \| pdb_00008svs	Download File View File

Crystal structure of pregnane X receptor ligand binding domain in complex with SJPYT-328

Garcia-Maldonado, E., Huber, A.D., Nithianantham, S., Miller, D.J., Chen, T.

(2024) Nat Commun 15: 4054-4054

Released	2024-05-15
Method	X-RAY DIFFRACTION 2.68 Å
Organisms	Homo sapiens
Macromolecule	Nuclear receptor subfamily 1 group I member 2, Nuclear receptor coactivator 1 fusion protein,Nuclear receptor coactivator 1 (protein)
Unique Ligands	WU2

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8SVT \| pdb_00008svt	Download File View File

Crystal structure of pregnane X receptor ligand binding domain in complex with SJPYT-331

Garcia-Maldonado, E., Huber, A.D., Nithianantham, S., Miller, D.J., Chen, T.

(2024) Nat Commun 15: 4054-4054

Released	2024-05-15
Method	X-RAY DIFFRACTION 2.39 Å
Organisms	Homo sapiens
Macromolecule	Nuclear receptor subfamily 1 group I member 2, Nuclear receptor coactivator 1 fusion protein,Nuclear receptor coactivator 1 (protein)
Unique Ligands	DMS, WU6

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8SVU \| pdb_00008svu	Download File View File

Crystal structure of the L428V mutant of pregnane X receptor ligand binding domain in apo form

Garcia-Maldonado, E., Huber, A.D., Nithianantham, S., Miller, D.J., Chen, T.

(2024) Nat Commun 15: 4054-4054

Released	2024-05-15
Method	X-RAY DIFFRACTION 2.89 Å
Organisms	Homo sapiens
Macromolecule	Nuclear receptor subfamily 1 group I member 2, Nuclear receptor coactivator 1 fusion protein,Nuclear receptor coactivator 1 (protein)
Unique Ligands	GOL

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8SVX \| pdb_00008svx	Download File View File

Crystal structure of the L428V mutant of pregnane X receptor ligand binding domain in complex with SJPYT-331

Garcia-Maldonado, E., Huber, A.D., Nithianantham, S., Miller, D.J., Chen, T.

(2024) Nat Commun 15: 4054-4054

Released	2024-05-15
Method	X-RAY DIFFRACTION 2.14 Å
Organisms	Homo sapiens
Macromolecule	Nuclear receptor subfamily 1 group I member 2, Nuclear receptor coactivator 1 fusion protein,Nuclear receptor coactivator 1 (protein)
Unique Ligands	DMS, WU6

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8SZV \| pdb_00008szv	Download File View File

Crystal structure of pregnane X receptor ligand binding domain complexed with T0901317 analog SJPYT-318

Huber, A.D., Poudel, S., Miller, D.J., Li, Y., Chen, T.

(2023) Structure 31: 1545

Released	2023-10-11
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Nuclear receptor subfamily 1 group I member 2 (protein)
Unique Ligands	X1D

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9BEQ \| pdb_00009beq	Download File View File

Crystal structure of pregnane X receptor ligand binding domain complexed with AP1867

Huber, A.D., Poudel, S., Miller, D.J., Chen, T.

(2024) Structure 32: 2352-2363.e8

Released	2024-10-09
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Nuclear receptor subfamily 1 group I member 2 (protein)
Unique Ligands	AP1

5TUQ | pdb_00005tuq

Crystal Structure of a 6-Cyclohexylmethyl-3-hydroxypyrimidine-2,4-dione Inhibitor in Complex with HIV Reverse Transcriptase

5UV5 | pdb_00005uv5

Crystal Structure of a 2-Hydroxyisoquinoline-1,3-dione RNase H Active Site Inhibitor with Multiple Binding Modes to HIV Reverse Transcriptase

6AOC | pdb_00006aoc

Crystal Structure of an N-Hydroxythienopyrimidine-2,4-dione RNase H Active Site Inhibitor with Multiple Binding Modes to HIV Reverse Transcriptase

7LAD | pdb_00007lad

Clobetasol propionate bound to CYP3A5

8E3N | pdb_00008e3n

Crystal structure of pregnane X receptor ligand binding domain complexed with rifamycin S

8EQZ | pdb_00008eqz

Crystal structure of pregnane X receptor ligand binding domain complexed with T0901317 analog T0-C6

8F5Y | pdb_00008f5y

Crystal structure of pregnane X receptor ligand binding domain complexed with JQ1

8FPE | pdb_00008fpe

Crystal structure of pregnane X receptor ligand binding domain complexed with T0901317 analog T0-BP

8SVN | pdb_00008svn

Crystal structure of the apo form of pregnane X receptor ligand binding domain

8SVO | pdb_00008svo

Crystal structure of pregnane X receptor ligand binding domain in complex with SJPYT-310

8SVP | pdb_00008svp

Crystal structure of pregnane X receptor ligand binding domain in complex with SJPYT-278

8SVQ | pdb_00008svq

Crystal structure of pregnane X receptor ligand binding domain in complex with SJPYT-312

8SVR | pdb_00008svr

Crystal structure of pregnane X receptor ligand binding domain in complex with SJPYT-326

8SVS | pdb_00008svs

Crystal structure of pregnane X receptor ligand binding domain in complex with SJPYT-328

8SVT | pdb_00008svt

Crystal structure of pregnane X receptor ligand binding domain in complex with SJPYT-331

8SVU | pdb_00008svu

Crystal structure of the L428V mutant of pregnane X receptor ligand binding domain in apo form

8SVX | pdb_00008svx

Crystal structure of the L428V mutant of pregnane X receptor ligand binding domain in complex with SJPYT-331

8SZV | pdb_00008szv

Crystal structure of pregnane X receptor ligand binding domain complexed with T0901317 analog SJPYT-318

9BEQ | pdb_00009beq

Crystal structure of pregnane X receptor ligand binding domain complexed with AP1867

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

5TUQ | pdb_00005tuq

5UV5 | pdb_00005uv5

6AOC | pdb_00006aoc

7LAD | pdb_00007lad

8E3N | pdb_00008e3n

8EQZ | pdb_00008eqz

8F5Y | pdb_00008f5y

8FPE | pdb_00008fpe

8SVN | pdb_00008svn

8SVO | pdb_00008svo

8SVP | pdb_00008svp

8SVQ | pdb_00008svq

8SVR | pdb_00008svr

8SVS | pdb_00008svs

8SVT | pdb_00008svt

8SVU | pdb_00008svu

8SVX | pdb_00008svx

8SZV | pdb_00008szv

9BEQ | pdb_00009beq