RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Citation Author = "Etzensperger, R."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 43 Structures.

Refinements

Structure Determination Methodology

experimental (43)

Scientific Name of Source Organism

	Dokdonia eikasta (17)
	Bacillus coahuilensis (13)
	Candidatus Actinomarina minuta (4)
	Halobacterium salinarum (3)
	Candidatus Nanosalina sp. J07AB43 (1)
	Escherichia coli (1)
	Escherichia coli K-12 (1)
	Haloarcula marismortui ATCC 43049 (1)
	Homo sapiens (1)
	Organic Lake phycodnavirus (1)

More...

Taxonomy

	Bacteria (36)
	Archaea (5)
	Eukaryota (2)
	Varidnaviria (1)

Experimental Method

X-RAY DIFFRACTION (43)

Polymer Entity Type

Protein (43)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (14)
	2.0 - 2.5 (16)
	2.5 - 3.0 (10)
	3.0 - 3.5 (1)

Release Date

	2010 - 2014 (1)
	2015 - 2019 (25)
	2020 - 2024 (17)

Enzyme Classification Name

Transferases (1)

Membrane Protein Annotation

	PDBTM (43)
	MemProtMD (36)
	mpstruc (30)
	OPM (14)

Symmetry Type

	Cyclic (29)
	Asymmetric (14)

SCOP Classification

Membrane and cell surface proteins and peptides (22)

AllSelected

1 to 25 of 43 Structures

Page 1 of 2

Sort by

Explore in 3D

4PXK \| pdb_00004pxk	Download File View File

Crystal structure of Haloarcula marismortui bacteriorhodopsin I D94N mutant

Shevchenko, V., Gushchin, I., Polovinkin, V., Gordeliy, V.

(2014) PLoS One 9: e112873-e112873

Released	2014-12-17
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Haloarcula marismortui ATCC 43049
Macromolecule	Bacteriorhodopsin (protein)
Unique Ligands	LFA, RET, SO4

Explore in 3D

4XTL \| pdb_00004xtl	Download File View File

Crystal structure of the light-driven sodium pump KR2 in the monomeric blue form, pH 4.3

Gushchin, I., Shevchenko, V., Polovinkin, V., Gordeliy, V.

(2015) Nat Struct Mol Biol 22: 390-395

Released	2015-04-01
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Dokdonia eikasta
Macromolecule	Sodium pumping rhodopsin (protein)
Unique Ligands	GOL, LFA, NA

Explore in 3D

4XTN \| pdb_00004xtn	Download File View File

Crystal structure of the light-driven sodium pump KR2 in the pentameric red form, pH 4.9

Gushchin, I., Shevchenko, V., Polovinkin, V., Gordeliy, V.

(2015) Nat Struct Mol Biol 22: 390-395

Released	2015-04-01
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Dokdonia eikasta
Macromolecule	Sodium pumping rhodopsin (protein)
Unique Ligands	LFA, MPG, NA

Explore in 3D

4XTO \| pdb_00004xto	Download File View File

Crystal structure of the light-driven sodium pump KR2 in the pentameric red form, pH 5.6

Gushchin, I., Shevchenko, V., Polovinkin, V., Gordeliy, V.

(2015) Nat Struct Mol Biol 22: 390-395

Released	2015-04-01
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Dokdonia eikasta
Macromolecule	Sodium pumping rhodopsin (protein)
Unique Ligands	LFA, NA

Explore in 3D

4XXJ \| pdb_00004xxj	Download File View File

Crystal Structure of Escherichia coli-Expressed Halobacterium salinarum Bacteriorhodopsin in the Trimeric Form

Bratanov, D., Balandin, T., Round, E., Gushchin, I., Gordeliy, V.

(2015) PLoS One 10: e0128390-e0128390

Released	2015-07-01
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Halobacterium salinarum
Macromolecule	Bacteriorhodopsin (protein)
Unique Ligands	LFA, MPG

Explore in 3D

5BR2 \| pdb_00005br2	Download File View File

Structure of bacteriorhodopsin crystallized from ND-MSP1

Nikolaev, M., Round, E., Gushchin, I., Gordeliy, V.

(2017) Cryst Growth Des 17: 945-948

Released	2016-09-14
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Halobacterium salinarum
Macromolecule	Bacteriorhodopsin (protein)
Unique Ligands	RET

Explore in 3D

5BR5 \| pdb_00005br5	Download File View File

Structure of bacteriorhodopsin crystallized from ND-MSP1E3D1

Nikolaev, M., Round, E., Gushchin, I., Gordeliy, V.

(2017) Cryst Growth Des 17: 945-948

Released	2016-09-14
Method	X-RAY DIFFRACTION 2 Å
Organisms	Halobacterium salinarum
Macromolecule	Bacteriorhodopsin (protein)
Unique Ligands	RET

Explore in 3D

5JGP \| pdb_00005jgp	Download File View File

Crystal structure of the nitrate/nitrite sensor NarQ fragment bound with iodide ions

Melnikov, I., Polovinkin, V., Popov, A., Gordeliy, V.

(2017) Sci Adv 3: e1602952-e1602952

Released	2017-05-31
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Escherichia coli K-12
Macromolecule	Nitrate/nitrite sensor protein NarQ (protein)
Unique Ligands	IOD, NO3

Explore in 3D

5JRF \| pdb_00005jrf	Download File View File

Crystal structure of the light-driven sodium pump KR2 bound with iodide ions

Melnikov, I., Polovinkin, V., Kovalev, K., Shevchenko, V., Gushchin, I., Popov, A., Gordeliy, V.

(2017) Sci Adv 3: e1602952-e1602952

Released	2017-05-31
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Dokdonia eikasta
Macromolecule	Sodium pumping rhodopsin (protein)
Unique Ligands	IOD, LFA

Explore in 3D

5JSI \| pdb_00005jsi	Download File View File

Structure of membrane protein

Melnikov, I., Polovinkin, V., Kovalev, K., Shevchenko, V., Gushchin, I., Popov, A., Gordeliy, V.

(2017) Sci Adv 3: e1602952-e1602952

Released	2017-05-31
Method	X-RAY DIFFRACTION 2 Å
Organisms	Candidatus Actinomarina minuta
Macromolecule	Bacteriorhodopsin (protein)
Unique Ligands	IOD, LFA, OLC

Explore in 3D

5JTB \| pdb_00005jtb	Download File View File

Crystal structure of the chimeric protein of A2aAR-BRIL with bound iodide ions

Melnikov, I., Polovinkin, V., Shevtsov, M., Borshchevskiy, V., Cherezov, V., Popov, A., Gordeliy, V.

(2017) Sci Adv 3: e1602952-e1602952

Released	2017-05-31
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli Homo sapiens
Macromolecule	Adenosine receptor A2a,Soluble cytochrome b562,Adenosine receptor A2a (protein)
Unique Ligands	CLR, IOD, OLA, OLB, OLC, PEG, ZMA

Explore in 3D

6EYU \| pdb_00006eyu	Download File View File

Crystal structure of the inward H(+) pump xenorhodopsin

Kovalev, K., Shevchenko, V., Polovinkin, V., Mager, T., Gushchin, I., Melnikov, I., Borshchevskiy, V., Popov, A., Alekseev, A., Gordeliy, V.

(2017) Sci Adv 3: e1603187

Released	2017-12-13
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Candidatus Nanosalina sp. J07AB43
Macromolecule	Bacteriorhodopsin (protein)
Unique Ligands	LFA, MUN, RET

Explore in 3D

6REX \| pdb_00006rex	Download File View File

Crystal structure of the light-driven sodium pump KR2 in the pentameric form, pH 6.0

Kovalev, K., Polovinkin, V., Gushchin, I., Borshchevskiy, V., Gordeliy, V.

(2019) Sci Adv 5: eaav2671-eaav2671

Released	2019-04-24
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Dokdonia eikasta
Macromolecule	Sodium pumping rhodopsin (protein)
Unique Ligands	BOG, LFA, NA, OLC, RET

Explore in 3D

6REZ \| pdb_00006rez	Download File View File

Crystal structure of the light-driven sodium pump KR2 in the pentameric form, pH 5.0

Kovalev, K., Polovinkin, V., Gushchin, I., Borshchevskiy, V., Gordeliy, V.

(2019) Sci Adv 5: eaav2671-eaav2671

Released	2019-04-24
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Dokdonia eikasta
Macromolecule	Sodium pumping rhodopsin (protein)
Unique Ligands	LFA, NA, OLC, RET

Explore in 3D

6RF0 \| pdb_00006rf0	Download File View File

Crystal structure of the light-driven sodium pump KR2 in the pentameric "dry" form

Kovalev, K., Polovinkin, V., Gushchin, I., Borshchevskiy, V., Gordeliy, V.

(2019) Sci Adv 5: eaav2671-eaav2671

Released	2019-04-24
Method	X-RAY DIFFRACTION 3 Å
Organisms	Dokdonia eikasta
Macromolecule	Sodium pumping rhodopsin (protein)
Unique Ligands	LFA, NA, OLC, RET

Explore in 3D

6RF1 \| pdb_00006rf1	Download File View File

Crystal structure of the light-driven sodium pump KR2 in the pentameric "wet" form

Kovalev, K., Polovinkin, V., Gushchin, I., Borshchevskiy, V., Gordeliy, V.

(2019) Sci Adv 5: eaav2671-eaav2671

Released	2019-04-24
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Dokdonia eikasta
Macromolecule	Sodium pumping rhodopsin (protein)
Unique Ligands	BOG, LFA, NA, OLC, RET

Explore in 3D

6RF3 \| pdb_00006rf3	Download File View File

Crystal structure of the potassium-pumping G263F mutant of the light-driven sodium pump KR2 in the pentameric form, pH 8.0

Kovalev, K., Polovinkin, V., Gushchin, I., Borshchevskiy, V., Gordeliy, V.

(2019) Sci Adv 5: eaav2671-eaav2671

Released	2019-04-24
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Dokdonia eikasta
Macromolecule	Sodium pumping rhodopsin (protein)
Unique Ligands	BOG, LFA, NA, OLC

Explore in 3D

6RF4 \| pdb_00006rf4	Download File View File

Crystal structure of the potassium-pumping S254A mutant of the light-driven sodium pump KR2 in the pentameric form, pH 8.0

Kovalev, K., Polovinkin, V., Gushchin, I., Borshchevskiy, V., Gordeliy, V.

(2019) Sci Adv 5: eaav2671-eaav2671

Released	2019-04-24
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Dokdonia eikasta
Macromolecule	Sodium pumping rhodopsin (protein)
Unique Ligands	BOG, LFA, NA, OLC, RET

Explore in 3D

6RF5 \| pdb_00006rf5	Download File View File

Crystal structure of the light-driven sodium pump KR2 in the monomeric form, pH 6.0

Kovalev, K., Polovinkin, V., Gushchin, I., Borshchevskiy, V., Gordeliy, V.

(2019) Sci Adv 5: eaav2671-eaav2671

Released	2019-04-24
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Dokdonia eikasta
Macromolecule	Sodium pumping rhodopsin (protein)
Unique Ligands	GOL, LFA, NA, RET

Explore in 3D

6RF6 \| pdb_00006rf6	Download File View File

Crystal structure of the light-driven sodium pump KR2 in the monomeric form, pH 8.0

Kovalev, K., Polovinkin, V., Gushchin, I., Borshchevskiy, V., Gordeliy, V.

(2019) Sci Adv 5: eaav2671-eaav2671

Released	2019-04-24
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Dokdonia eikasta
Macromolecule	Sodium pumping rhodopsin (protein)
Unique Ligands	LFA, NA, RET

Explore in 3D

6RF7 \| pdb_00006rf7	Download File View File

Crystal structure of the light-driven sodium pump KR2 in the monomeric form, pH 8.9

Kovalev, K., Polovinkin, V., Gushchin, I., Borshchevskiy, V., Gordeliy, V.

(2019) Sci Adv 5: eaav2671-eaav2671

Released	2019-04-24
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Dokdonia eikasta
Macromolecule	Sodium pumping rhodopsin (protein)
Unique Ligands	LFA, RET

Explore in 3D

6RF9 \| pdb_00006rf9	Download File View File

Crystal structure of the Y154F mutant of the light-driven sodium pump KR2 in the monomeric form, pH 8.0

Kovalev, K., Polovinkin, V., Gushchin, I., Borshchevskiy, V., Gordeliy, V.

(2019) Sci Adv 5: eaav2671-eaav2671

Released	2019-04-24
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Dokdonia eikasta
Macromolecule	Sodium pumping rhodopsin (protein)
Unique Ligands	GOL, LFA, NA, RET

Explore in 3D

6RFA \| pdb_00006rfa	Download File View File

Crystal structure of the H30K mutant of the light-driven sodium pump KR2 in the monomeric form, pH 8.0

Kovalev, K., Polovinkin, V., Gushchin, I., Borshchevskiy, V., Gordeliy, V.

(2019) Sci Adv 5: eaav2671-eaav2671

Released	2019-04-24
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Dokdonia eikasta
Macromolecule	Sodium pumping rhodopsin (protein)
Unique Ligands	GOL, LFA, NA, RET

Explore in 3D

6RFB \| pdb_00006rfb	Download File View File

Crystal structure of the potassium-pumping S254A mutant of the light-driven sodium pump KR2 in the monomeric form, pH 4.3

Kovalev, K., Polovinkin, V., Gushchin, I., Borshchevskiy, V., Gordeliy, V.

(2019) Sci Adv 5: eaav2671-eaav2671

Released	2019-04-24
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Dokdonia eikasta
Macromolecule	Sodium pumping rhodopsin (protein)
Unique Ligands	GOL, LFA, NA, RET

Explore in 3D

6RFC \| pdb_00006rfc	Download File View File

Crystal structure of the potassium-pumping G263F mutant of the light-driven sodium pump KR2 in the monomeric form, pH 4.3

Kovalev, K., Polovinkin, V., Gushchin, I., Borshchevskiy, V., Gordeliy, V.

(2019) Sci Adv 5: eaav2671-eaav2671

Released	2019-04-24
Method	X-RAY DIFFRACTION 2 Å
Organisms	Dokdonia eikasta
Macromolecule	Sodium pumping rhodopsin (protein)
Unique Ligands	GOL, LFA, NA, OLC, RET

1 to 25 of 43 Structures

Page 1 of 2

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

4PXK | pdb_00004pxk

4XTL | pdb_00004xtl

4XTN | pdb_00004xtn

4XTO | pdb_00004xto

4XXJ | pdb_00004xxj

5BR2 | pdb_00005br2

5BR5 | pdb_00005br5

5JGP | pdb_00005jgp

5JRF | pdb_00005jrf

5JSI | pdb_00005jsi

5JTB | pdb_00005jtb

6EYU | pdb_00006eyu

6REX | pdb_00006rex

6REZ | pdb_00006rez

6RF0 | pdb_00006rf0

6RF1 | pdb_00006rf1

6RF3 | pdb_00006rf3

6RF4 | pdb_00006rf4

6RF5 | pdb_00006rf5

6RF6 | pdb_00006rf6

6RF7 | pdb_00006rf7

6RF9 | pdb_00006rf9

6RFA | pdb_00006rfa

6RFB | pdb_00006rfb

6RFC | pdb_00006rfc