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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Dimitrova, Y.N."

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Search Summary

This query matches 19 Structures.

Refinements

Structure Determination Methodology

experimental (19)

Scientific Name of Source Organism

	Escherichia coli (9)
	Homo sapiens (5)
	Gentiana triflora (2)
	Arabidopsis thaliana (1)
	Escherichia coli K-12 (1)
	Mus musculus (1)

Taxonomy

	Bacteria (10)
	Eukaryota (9)

Experimental Method

	X-RAY DIFFRACTION (13)
	SOLUTION NMR (6)

Polymer Entity Type

Protein (19)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (4)
	2.0 - 2.5 (4)
	2.5 - 3.0 (3)
	3.0 - 3.5 (1)

Release Date

	1995 - 1999 (6)
	2000 - 2004 (3)
	2005 - 2009 (2)
	2010 - 2014 (3)
	2015 - 2019 (2)
	2020 - 2024 (3)

Enzyme Classification Name

	Transferases (6)
	Hydrolases (6)

Membrane Protein Annotation

OPM (1)

Symmetry Type

	Asymmetric (17)
	Cyclic (2)

SCOP Classification

	All alpha proteins (8)
	All beta proteins (3)
	Small proteins (2)
	Alpha and beta proteins (a+b) (1)
	Alpha and beta proteins (a/b) (1)

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1 to 19 of 19 Structures

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1A0B \| pdb_00001a0b	Download File View File

HISTIDINE-CONTAINING PHOSPHOTRANSFER DOMAIN OF ARCB FROM ESCHERICHIA COLI

Kato, M., Mizuno, T., Shimizu, T., Hakoshima, T.

(1997) Cell 88: 717-723

Released	1998-03-18
Method	X-RAY DIFFRACTION 2.06 Å
Organisms	Escherichia coli
Macromolecule	AEROBIC RESPIRATION CONTROL SENSOR PROTEIN ARCB (protein)
Unique Ligands	ZN

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1BDJ \| pdb_00001bdj	Download File View File

COMPLEX STRUCTURE OF HPT DOMAIN AND CHEY

Kato, M., Mizuno, T., Shimizu, T., Hakoshima, T.

(1999) Acta Crystallogr D Biol Crystallogr 55: 1257-1263

Released	1999-05-11
Method	X-RAY DIFFRACTION 2.68 Å
Organisms	Escherichia coli
Macromolecule	AEROBIC RESPIRATION CONTROL SENSOR PROTEIN ARCB (protein) CHEY (protein)
Unique Ligands	SO4

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1DCJ \| pdb_00001dcj	Download File View File

SOLUTION STRUCTURE OF YHHP, A NOVEL ESCHERICHIA COLI PROTEIN IMPLICATED IN THE CELL DIVISION

Katoh, E., Hatta, T., Shindo, H., Mizuno, T., Yamazaki, T.

(2000) J Mol Biology 304: 219-229

Released	2001-07-18
Method	SOLUTION NMR
Organisms	Escherichia coli
Macromolecule	YHHP PROTEIN (protein)

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1FR0 \| pdb_00001fr0	Download File View File

SOLUTION STRUCTURE OF THE HISTIDINE-CONTAINING PHOSPHOTRANSFER DOMAIN OF ANAEROBIC SENSOR KINASE ARCB FROM ESCHERICHIA COLI.

Ikegami, T., Okada, T., Ohki, I., Hirayama, J., Mizuno, T., Shirakawa, M.

(2001) Biochemistry 40: 375-386

Released	2001-03-14
Method	SOLUTION NMR
Organisms	Escherichia coli
Macromolecule	ARCB (protein)

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1HNR \| pdb_00001hnr	Download File View File

H-NS (DNA-BINDING DOMAIN)

Shindo, H., Iwaki, T., Ieda, R., Kurumizaka, H., Ueguchi, C., Mizuno, T., Morikawa, S., Nakamura, H., Kuboniwa, H.

(1995) FEBS Lett 360: 125-131

Released	1995-07-10
Method	SOLUTION NMR
Organisms	Escherichia coli
Macromolecule	H-NS (protein)

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1HNS \| pdb_00001hns	Download File View File

H-NS (DNA-BINDING DOMAIN)

Shindo, H., Iwaki, T., Ieda, R., Kurumizaka, H., Ueguchi, C., Mizuno, T., Morikawa, S., Nakamura, H., Kuboniwa, H.

(1995) FEBS Lett 360: 125-131

Released	1995-07-10
Method	SOLUTION NMR
Organisms	Escherichia coli
Macromolecule	H-NS (protein)

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1IRZ \| pdb_00001irz	Download File View File

Solution structure of ARR10-B belonging to the GARP family of plant Myb-related DNA binding motifs of the Arabidopsis response regulators

Yamazaki, T., Katoh, E., Hosoda, K., Mizuno, T.

(2003) Plant Cell 14: 2015-2029

Released	2003-02-11
Method	SOLUTION NMR
Organisms	Arabidopsis thaliana
Macromolecule	ARR10-B (protein)

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1ODD \| pdb_00001odd	Download File View File

OMPR C-TERMINAL DOMAIN (OMPR-C) FROM ESCHERICHIA COLI

Kondou, H., Nakagawa, A., Tanaka, I.

(1997) Nat Struct Biol 4: 28-31

Released	1997-05-15
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Escherichia coli K-12
Macromolecule	TRANSCRIPTIONAL REGULATORY PROTEIN OMPR (protein)

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1UJB \| pdb_00001ujb	Download File View File

Structure of the protein histidine phosphatase SixA

Hamada, K., Kato, M., Shimizu, T., Ihara, K., Mizuno, T., Hakoshima, T.

(2005) Genes Cells 10: 1-11

Released	2005-01-25
Method	X-RAY DIFFRACTION 2.06 Å
Organisms	Escherichia coli
Macromolecule	Phosphohistidine phosphatase sixA (protein)
Unique Ligands	CA

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1UJC \| pdb_00001ujc	Download File View File

Structure of the protein histidine phosphatase SixA complexed with tungstate

Hamada, K., Kato, M., Shimizu, T., Ihara, K., Mizuno, T., Hakoshima, T.

(2005) Genes Cells 10: 1-11

Released	2005-01-25
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Escherichia coli
Macromolecule	Phosphohistidine phosphatase sixA (protein)
Unique Ligands	CA, WO4

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2A0B \| pdb_00002a0b	Download File View File

HISTIDINE-CONTAINING PHOSPHOTRANSFER DOMAIN OF ARCB FROM ESCHERICHIA COLI

Kato, M., Mizuno, T., Shimizu, T., Hakoshima, T.

(1999) Acta Crystallogr D Biol Crystallogr 55: 1842-1849

Released	1998-06-17
Method	X-RAY DIFFRACTION 1.57 Å
Organisms	Escherichia coli
Macromolecule	HPT DOMAIN (protein)
Unique Ligands	ZN

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2RQQ \| pdb_00002rqq	Download File View File

Structure of C-terminal region of Cdt1

Jee, J.G., Mizuno, T., Kamada, K., Tochio, H., Hiroaki, H., Hanaoka, F., Shirakawa, M.

(2010) J Biological Chem 285: 15931-15940

Released	2010-03-23
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	DNA replication factor Cdt1 (protein)

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3UNP \| pdb_00003unp	Download File View File

Structure of human SUN2 SUN domain

Zhou, Z.C., Greene, M.I.

(2012) J Biological Chem 287: 5317-5326

Released	2011-12-21
Method	X-RAY DIFFRACTION 2.39 Å
Organisms	Homo sapiens
Macromolecule	SUN domain-containing protein 2 (protein)
Unique Ligands	ACE

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4KP0 \| pdb_00004kp0	Download File View File

Crystal Structure of the human Chymase with TJK002

Kakuda, S., Takimoto-Kamimura, M.

(2013) J Synchrotron Radiat 20: 914-918

Released	2013-10-30
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	Chymase (protein)
Unique Ligands	KPK

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5TNO \| pdb_00005tno	Download File View File

Discovery of novel aminobenzisoxazole derivatives as orally available factor IXa inhibitors

Sakurada, I., Endo, T., Hikita, K., Hirabayashi, T., Hosaka, Y., Kato, Y., Maeda, Y., Matsumoto, S., Mizuno, T., Nagasue, H., Nishimura, T., Shimada, S., Shinozaki, M., Taguchi, K., Takeuchi, K., Yokoyama, T., Hruza, A., Reichert, P., Zhang, T., Wood, H.B., Nakao, K., Furusako, S.

(2017) Bioorg Med Chem Lett 27: 2622-2628

Released	2017-04-26
Method	X-RAY DIFFRACTION 1.54 Å
Organisms	Homo sapiens
Macromolecule	Coagulation factor IX (protein)
Unique Ligands	NA, NHE, UNL

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5TNT \| pdb_00005tnt	Download File View File

Discovery of novel aminobenzisoxazole derivatives as orally available factor IXa inhibitors

Sakurada, I., Endo, T., Hikita, K., Hirabayashi, T., Hosaka, Y., Kato, Y., Maeda, Y., Matsumoto, S., Mizuno, T., Nagasue, A., Nishimura, T., Shimada, S., Shinozaki, M., Taguchi, K., Takeuchi, K., Yokoyama, T., Hruza, A., Reichert, P., Zhang, T., Wood, H.B., Nakao, K., Furusako, S.

(2017) Bioorg Med Chem Lett 27: 2622-2628

Released	2017-04-26
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Homo sapiens
Macromolecule	Coagulation factor IX (protein)
Unique Ligands	7GQ, NA, NHE

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7B7V \| pdb_00007b7v	Download File View File

Structure of NUDT15 in complex with Acyclovir monophosphate

Rehling, D., Stenmark, P.

(2021) Nat Commun 12: 4181-4181

Released	2021-05-19
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	Probable 8-oxo-dGTP diphosphatase NUDT15 (protein)
Unique Ligands	4DG, CL, MG

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7DEV \| pdb_00007dev	Download File View File

Crystal Structures of Anthocyanin 5,3'-aromatic acyltransferase from Gentiana triflora

Murayama, K., Kato-Murayama, M., Shirouzu, M.

(2021) Phytochemistry 186: 112727-112727

Released	2021-09-15
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Gentiana triflora
Macromolecule	Anthocyanin 5-aromatic acyltransferase (protein)

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7DEX \| pdb_00007dex	Download File View File

Crystal Structures of Anthocyanin 5,3'-aromatic acyltransferase H174A mutant with caffeoyl-CoA

Murayama, K., Kato-Murayama, M., Shirouzu, M.

(2021) Phytochemistry 186: 112727-112727

Released	2021-09-15
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Gentiana triflora
Macromolecule	Anthocyanin 5-aromatic acyltransferase (protein)
Unique Ligands	H5L

1 to 19 of 19 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1A0B | pdb_00001a0b

HISTIDINE-CONTAINING PHOSPHOTRANSFER DOMAIN OF ARCB FROM ESCHERICHIA COLI

1BDJ | pdb_00001bdj

COMPLEX STRUCTURE OF HPT DOMAIN AND CHEY

1DCJ | pdb_00001dcj

SOLUTION STRUCTURE OF YHHP, A NOVEL ESCHERICHIA COLI PROTEIN IMPLICATED IN THE CELL DIVISION

1FR0 | pdb_00001fr0

SOLUTION STRUCTURE OF THE HISTIDINE-CONTAINING PHOSPHOTRANSFER DOMAIN OF ANAEROBIC SENSOR KINASE ARCB FROM ESCHERICHIA COLI.

1HNR | pdb_00001hnr

H-NS (DNA-BINDING DOMAIN)

1HNS | pdb_00001hns

H-NS (DNA-BINDING DOMAIN)

1IRZ | pdb_00001irz

Solution structure of ARR10-B belonging to the GARP family of plant Myb-related DNA binding motifs of the Arabidopsis response regulators

1ODD | pdb_00001odd

OMPR C-TERMINAL DOMAIN (OMPR-C) FROM ESCHERICHIA COLI

1UJB | pdb_00001ujb

Structure of the protein histidine phosphatase SixA

1UJC | pdb_00001ujc

Structure of the protein histidine phosphatase SixA complexed with tungstate

2A0B | pdb_00002a0b

HISTIDINE-CONTAINING PHOSPHOTRANSFER DOMAIN OF ARCB FROM ESCHERICHIA COLI

2RQQ | pdb_00002rqq

Structure of C-terminal region of Cdt1

3UNP | pdb_00003unp

Structure of human SUN2 SUN domain

4KP0 | pdb_00004kp0

Crystal Structure of the human Chymase with TJK002

5TNO | pdb_00005tno

Discovery of novel aminobenzisoxazole derivatives as orally available factor IXa inhibitors

5TNT | pdb_00005tnt

Discovery of novel aminobenzisoxazole derivatives as orally available factor IXa inhibitors

7B7V | pdb_00007b7v

Structure of NUDT15 in complex with Acyclovir monophosphate

7DEV | pdb_00007dev

Crystal Structures of Anthocyanin 5,3'-aromatic acyltransferase from Gentiana triflora

7DEX | pdb_00007dex

Crystal Structures of Anthocyanin 5,3'-aromatic acyltransferase H174A mutant with caffeoyl-CoA

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1A0B | pdb_00001a0b

1BDJ | pdb_00001bdj

1DCJ | pdb_00001dcj

1FR0 | pdb_00001fr0

1HNR | pdb_00001hnr

1HNS | pdb_00001hns

1IRZ | pdb_00001irz

1ODD | pdb_00001odd

1UJB | pdb_00001ujb

1UJC | pdb_00001ujc

2A0B | pdb_00002a0b

2RQQ | pdb_00002rqq

3UNP | pdb_00003unp

4KP0 | pdb_00004kp0

5TNO | pdb_00005tno

5TNT | pdb_00005tnt

7B7V | pdb_00007b7v

7DEV | pdb_00007dev

7DEX | pdb_00007dex