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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Boy-Rottger, S."

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Search Summary

This query matches 14 Structures.

Refinements

Structure Determination Methodology

experimental (14)

Scientific Name of Source Organism

	Homo sapiens (6)
	Mus musculus (3)
	Oryzias latipes (3)
	Rattus norvegicus (2)
	Danio rerio (1)
	Escherichia coli UTI89 (1)
	Xenopus laevis (1)

Taxonomy

	Eukaryota (14)
	Bacteria (1)

Experimental Method

	X-RAY DIFFRACTION (10)
	ELECTRON MICROSCOPY (4)

Polymer Entity Type

Protein (14)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (2)
	2.0 - 2.5 (1)
	2.5 - 3.0 (3)
	3.0 - 3.5 (2)
	3.5 - 4.0 (1)
	4.0 - 4.5 (1)
	> 4.5 (2)

Release Date

	2010 - 2014 (2)
	2020 - 2024 (10)
	2025 - 2029 (2)

Enzyme Classification Name

Hydrolases (2)

Symmetry Type

	Asymmetric (12)
	Cyclic (2)

AllSelected

1 to 14 of 14 Structures

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3LQB \| pdb_00003lqb	Download File View File

Crystal structure of the hatching enzyme ZHE1 from the zebrafish Danio rerio

Tanokura, M., Okada, A., Nagata, K., Yasumasu, S., Ohtsuka, J., Iuchi, I.

(2010) J Mol Biology 402: 865-878

Released	2010-09-08
Method	X-RAY DIFFRACTION 1.1 Å
Organisms	Danio rerio
Macromolecule	LOC792177 protein (protein)
Unique Ligands	EDO, SO4, ZN

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3VTG \| pdb_00003vtg	Download File View File

High choriolytic enzyme 1 (HCE-1), a hatching enzyme zinc-protease from Oryzias latipes (Medaka fish)

Kudo, N., Yasumasu, S., Iuchi, I., Tanokura, M.

To be published

Released	2013-06-05
Method	X-RAY DIFFRACTION 1.34 Å
Organisms	Oryzias latipes
Macromolecule	High choriolytic enzyme 1 (protein)
Unique Ligands	ZN

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6TQK \| pdb_00006tqk	Download File View File

Cryo-EM of native human uromodulin (UMOD)/Tamm-Horsfall protein (THP) filament.

Stsiapanava, A., Xu, C., Carroni, M., Wu, B., Jovine, L.

(2020) EMBO J 39: e106807-e106807

Released	2020-11-04
Method	ELECTRON MICROSCOPY 3.35 Å
Organisms	Homo sapiens
Macromolecule	Uromodulin (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, GAL, MAN, NAG

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6TQL \| pdb_00006tql	Download File View File

Cryo-EM of elastase-treated human uromodulin (UMOD)/Tamm-Horsfall protein (THP) filament

Stsiapanava, A., Xu, C., Carroni, M., Wu, B., Jovine, L.

(2020) EMBO J 39: e106807-e106807

Released	2020-11-04
Method	ELECTRON MICROSCOPY 3.96 Å
Organisms	Homo sapiens
Macromolecule	Uromodulin (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, GAL, MAN, NAG

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7PFP \| pdb_00007pfp	Download File View File

Full-length cryo-EM structure of the native human uromodulin (UMOD)/Tamm-Horsfall protein (THP) filament

Jovine, L., Xu, C., Stsiapanava, A., Carroni, M., Tunyasuvunakool, K., Jumper, J., Wu, B.

(2022) Nat Struct Mol Biol 29: 190-193

Released	2022-03-16
Method	ELECTRON MICROSCOPY 6.1 Å
Organisms	Homo sapiens
Macromolecule	Uromodulin (protein)
Unique branched monosaccharides	BMA, FUC, GAL, MAN, NAG

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7Q3N \| pdb_00007q3n	Download File View File

Cryo-EM of the complex between human uromodulin (UMOD)/Tamm-Horsfall protein (THP) and the FimH lectin domain from uropathogenic E. coli

Jovine, L., Xu, C., Stsiapanava, A., Carroni, M., Tunyasuvunakool, K., Jumper, J., Wu, B.

(2022) Nat Struct Mol Biol 29: 190-193

Released	2022-03-16
Method	ELECTRON MICROSCOPY 7.4 Å
Organisms	Escherichia coli UTI89 Homo sapiens
Macromolecule	Type 1 fimbiral adhesin FimH (protein) Uromodulin (protein)
Unique branched monosaccharides	BMA, FUC, GAL, MAN, NAG

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8BQU \| pdb_00008bqu	Download File View File

Molecular basis of ZP3/ZP1 heteropolymerization: crystal structure of a native vertebrate egg coat filament

Bokhove, M., de Sanctis, D., Yasumasu, S., Jovine, L.

(2024) Cell 187: 1440-1459.e24

Released	2024-03-13
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Oryzias latipes
Macromolecule	Choriogenin H (protein) Zona pellucida sperm-binding protein 3 (protein)
Unique branched monosaccharides	BMA, GAL, MAN, NAG

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8RKE \| pdb_00008rke	Download File View File

Crystal structure of the complete N-terminal region of human ZP2 (hZP2-N1N2N3)

Fahrenkamp, D., de Sanctis, D., Jovine, L.

(2024) Cell 187: 1440-1459.e24

Released	2024-03-13
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	Zona pellucida sperm-binding protein 2 (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, MAN, NAG

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8RKF \| pdb_00008rkf	Download File View File

Crystal structure of the ZP-N1 and ZP-N2 domains of human ZP2 (hZP2-N1N2)

Dioguardi, E., Stsiapanava, A., de Sanctis, D., Jovine, L.

(2024) Cell 187: 1440-1459.e24

Released	2024-03-13
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Homo sapiens
Macromolecule	Zona pellucida sperm-binding protein 2 (protein)
Unique Ligands	NAG

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8RKG \| pdb_00008rkg	Download File View File

Crystal structure of tetrameric collagenase-cleaved Xenopus ZP2-N2N3 (cleaved xZP2-N2N3)

Nishio, S., de Sanctis, D., Jovine, L.

(2024) Cell 187: 1440-1459.e24

Released	2024-03-13
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Xenopus laevis
Macromolecule	XlZPA protein (protein)
Unique Ligands	BCN, NAG, NO3
Unique branched monosaccharides	NAG

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8RKH \| pdb_00008rkh	Download File View File

Crystal structure of the ZP-N2 and ZP-N3 domains of mouse ZP2 (mZP2-N2N3)

Fahrenkamp, D., de Sanctis, D., Jovine, L.

(2024) Cell 187: 1440-1459.e24

Released	2024-03-13
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Mus musculus
Macromolecule	Zona pellucida sperm-binding protein 2 (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, MAN, NAG

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8RKI \| pdb_00008rki	Download File View File

Molecular basis of ZP3/ZP1 heteropolymerization: crystal structure of a native vertebrate egg coat filament fragment

Wiseman, B., Zamora-Caballero, S., de Sanctis, D., Yasumasu, S., Jovine, L.

(2024) Cell 187: 1440-1459.e24

Released	2024-03-13
Method	X-RAY DIFFRACTION 4.2 Å
Organisms	Oryzias latipes
Macromolecule	Choriogenin H (protein) Zona pellucida sperm-binding protein 3 (protein)
Unique Ligands	YB
Unique branched monosaccharides	BMA, NAG

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9H4R \| pdb_00009h4r	Download File View File

Structure of fertilization-blocking monoclonal antibody IE-3 VHVL bound to the ZP-N1 domain of mouse ZP2 (crystal form I)

Dioguardi, E., De Sanctis, D., Jovine, L.

(2025) Proc Natl Acad Sci U S A

Released	2025-03-12
Method	X-RAY DIFFRACTION 1.53 Å
Organisms	Mus musculus Rattus norvegicus
Macromolecule	Heavy chain variable (VH) domain of anti-ZP2 monoclonal antibody IE-3 (protein) Light chain variable (VL) domain of anti-ZP2 monoclonal antibody IE-3 (protein) Zona pellucida sperm-binding protein 2 (protein)

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9H4S \| pdb_00009h4s	Download File View File

Structure of fertilization-blocking monoclonal antibody IE-3 VHVL bound to the ZP-N1 domain of mouse ZP2 (crystal form II)

Dioguardi, E., De Sanctis, D., Jovine, L.

(2025) Proc Natl Acad Sci U S A

Released	2025-03-12
Method	X-RAY DIFFRACTION 2.02 Å
Organisms	Mus musculus Rattus norvegicus
Macromolecule	Heavy chain variable (VH) domain of anti-ZP2 monoclonal antibody IE-3 (protein) Light chain variable (VL) domain of anti-ZP2 monoclonal antibody IE-3 (protein) Zona pellucida sperm-binding protein 2 (protein)

1 to 14 of 14 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

3LQB | pdb_00003lqb

Crystal structure of the hatching enzyme ZHE1 from the zebrafish Danio rerio

3VTG | pdb_00003vtg

High choriolytic enzyme 1 (HCE-1), a hatching enzyme zinc-protease from Oryzias latipes (Medaka fish)

6TQK | pdb_00006tqk

Cryo-EM of native human uromodulin (UMOD)/Tamm-Horsfall protein (THP) filament.

6TQL | pdb_00006tql

Cryo-EM of elastase-treated human uromodulin (UMOD)/Tamm-Horsfall protein (THP) filament

7PFP | pdb_00007pfp

Full-length cryo-EM structure of the native human uromodulin (UMOD)/Tamm-Horsfall protein (THP) filament

7Q3N | pdb_00007q3n

Cryo-EM of the complex between human uromodulin (UMOD)/Tamm-Horsfall protein (THP) and the FimH lectin domain from uropathogenic E. coli

8BQU | pdb_00008bqu

Molecular basis of ZP3/ZP1 heteropolymerization: crystal structure of a native vertebrate egg coat filament

8RKE | pdb_00008rke

Crystal structure of the complete N-terminal region of human ZP2 (hZP2-N1N2N3)

8RKF | pdb_00008rkf

Crystal structure of the ZP-N1 and ZP-N2 domains of human ZP2 (hZP2-N1N2)

8RKG | pdb_00008rkg

Crystal structure of tetrameric collagenase-cleaved Xenopus ZP2-N2N3 (cleaved xZP2-N2N3)

8RKH | pdb_00008rkh

Crystal structure of the ZP-N2 and ZP-N3 domains of mouse ZP2 (mZP2-N2N3)

8RKI | pdb_00008rki

Molecular basis of ZP3/ZP1 heteropolymerization: crystal structure of a native vertebrate egg coat filament fragment

9H4R | pdb_00009h4r

Structure of fertilization-blocking monoclonal antibody IE-3 VHVL bound to the ZP-N1 domain of mouse ZP2 (crystal form I)

9H4S | pdb_00009h4s

Structure of fertilization-blocking monoclonal antibody IE-3 VHVL bound to the ZP-N1 domain of mouse ZP2 (crystal form II)

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

3LQB | pdb_00003lqb

3VTG | pdb_00003vtg

6TQK | pdb_00006tqk

6TQL | pdb_00006tql

7PFP | pdb_00007pfp

7Q3N | pdb_00007q3n

8BQU | pdb_00008bqu

8RKE | pdb_00008rke

8RKF | pdb_00008rkf

8RKG | pdb_00008rkg

8RKH | pdb_00008rkh

8RKI | pdb_00008rki

9H4R | pdb_00009h4r

9H4S | pdb_00009h4s