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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Baker, L.M."

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Search Summary

This query matches 18 Structures.

Refinements

Structure Determination Methodology

experimental (18)

Scientific Name of Source Organism

	Homo sapiens (10)
	Monodelphis domestica (3)
	Thermochaetoides thermophila (3)
	synthetic construct (2)
	Saccharomyces cerevisiae (1)

Taxonomy

	Eukaryota (17)
	other sequences (2)

Experimental Method

X-RAY DIFFRACTION (18)

Polymer Entity Type

Protein (18)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (1)
	2.0 - 2.5 (8)
	2.5 - 3.0 (2)
	3.0 - 3.5 (6)

Release Date

	2015 - 2019 (6)
	2020 - 2024 (12)

Symmetry Type

Asymmetric (18)

SCOP Classification

	All beta proteins (4)
	Artifacts (4)
	Alpha and beta proteins (a+b) (4)

AllSelected

1 to 18 of 18 Structures

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Explore in 3D

4U7A \| pdb_00004u7a	Download File View File

The carboxy-terminal domain of Erb1 is a seven-bladed beta-propeller that binds RNA.

Wegrecki, M., Bravo, J.

(2015) PLoS One 10: e0123463-e0123463

Released	2015-04-29
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Ribosome biogenesis protein ERB1 (protein)
Unique Ligands	EDO, EOH, GOL

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5CXB \| pdb_00005cxb	Download File View File

Structure of Ytm1 bound to the C-terminal domain of Erb1 in P21 21 2 space group

Wegrecki, M., Bravo, J.

(2015) Nucleic Acids Res 43: 11017-11030

Released	2015-11-04
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Thermochaetoides thermophila
Macromolecule	Ribosome biogenesis protein ERB1 (protein) Ribosome biogenesis protein YTM1 (protein)
Unique Ligands	CL, EDO, GOL, NA

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5CXC \| pdb_00005cxc	Download File View File

Structure of Ytm1 bound to the C-terminal domain of Erb1 in P 65 2 2 space group

Wegrecki, M., Bravo, J.

(2015) Nucleic Acids Res 43: 11017-11030

Released	2015-10-28
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Thermochaetoides thermophila
Macromolecule	Ribosome biogenesis protein ERB1 (protein) Ribosome biogenesis protein YTM1 (protein)
Unique Ligands	CL

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5CYK \| pdb_00005cyk	Download File View File

Structure of Ytm1 bound to the C-terminal domain of Erb1-R486E

Wegrecki, M., Bravo, J.

(2015) Nucleic Acids Res 43: 11017-11030

Released	2015-10-28
Method	X-RAY DIFFRACTION 3 Å
Organisms	Thermochaetoides thermophila
Macromolecule	Ribosome biogenesis protein ERB1 (protein) Ribosome biogenesis protein YTM1 (protein)
Unique Ligands	CL

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5VNV \| pdb_00005vnv	Download File View File

Crystal structure of Nb.b201

Kruse, A.C., McMahon, C.

(2018) Nat Struct Mol Biol 25: 289-296

Released	2018-02-21
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	synthetic construct
Macromolecule	Nb.b201 (protein)
Unique Ligands	1PE, FMT, K

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5VNW \| pdb_00005vnw	Download File View File

Crystal structure of Nb.b201 bound to human serum albumin

McMahon, C., Kruse, A.C.

(2018) Nat Struct Mol Biol 25: 289-296

Released	2018-02-21
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Nb.b201 (protein) Serum albumin (protein)
Unique Ligands	BUA, DAO, GOL, PLM

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6NUX \| pdb_00006nux	Download File View File

CD1a-lipid binary complex

Wegrecki, M., Le Nours, J., Rossjohn, J.

(2020) Sci Immunol 5:

Released	2020-01-15
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Beta-2-microglobulin (protein) CD1A protein (protein)
Unique Ligands	EDO, FOF

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7K0X \| pdb_00007k0x	Download File View File

Marsupial T cell receptor Spl_145

Wegrecki, M., Kannan Sivaraman, K., Le Nours, J., Rossjohn, J.

(2021) Science 371: 1383-1388

Released	2021-03-24
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Monodelphis domestica
Macromolecule	T cell receptor gamma chain (protein) T cell receptor mu chain (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, NAG

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7K0Z \| pdb_00007k0z	Download File View File

Marsupial T cell receptor Spl_157

Wegrecki, M., Kannan Sivaraman, K., Le Nours, J., Rossjohn, J.

(2021) Science 371: 1383-1388

Released	2021-03-24
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Monodelphis domestica
Macromolecule	T cell receptor gamma chain (protein) T cell receptor mu chain (protein)
Unique Ligands	NAG

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7KOZ \| pdb_00007koz	Download File View File

CD1a-36:2 SM binary complex

Wegrecki, M., Le Nours, J., Rossjohn, J.

(2021) J Exp Medicine 218:

Released	2021-05-05
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Homo sapiens
Macromolecule	Beta-2-microglobulin (protein) T-cell surface glycoprotein CD1a (protein)
Unique Ligands	EDO, NAG, WU7

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7KP0 \| pdb_00007kp0	Download File View File

CD1a-42:1 SM binary complex

Wegrecki, M., Le Nours, J., Rossjohn, J.

(2021) J Exp Medicine 218:

Released	2021-05-05
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Beta-2-microglobulin (protein) T-cell surface glycoprotein CD1a (protein)
Unique Ligands	EDO, WUA

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7KP1 \| pdb_00007kp1	Download File View File

CD1a-42:2 SM binary complex

Wegrecki, M., Le Nours, J., Rossjohn, J.

(2021) J Exp Medicine 218:

Released	2021-05-05
Method	X-RAY DIFFRACTION 2.02 Å
Organisms	Homo sapiens
Macromolecule	Beta-2-microglobulin (protein) T-cell surface glycoprotein CD1a (protein)
Unique Ligands	FO4, MES

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7L15 \| pdb_00007l15	Download File View File

Marsupial T cell receptor Spl_118

Wegrecki, M., Kannan Sivaraman, K., Praveena, T., Le Nours, J., Rossjohn, J.

(2021) Science 371: 1383-1388

Released	2021-03-24
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Monodelphis domestica
Macromolecule	T cell receptor gamma chain (protein) T cell receptor mu chain (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

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7RYL \| pdb_00007ryl	Download File View File

T cell receptor CO3

Wegrecki, M., Le Nours, J., Rossjohn, J.

(2022) Nat Commun 13: 3872-3872

Released	2022-05-18
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	T cell receptor delta variable 1,T cell receptor alpha chain constant (protein) T cell receptor gamma variable 4,T cell receptor beta constant 1 (protein)
Unique Ligands	EDO, SO4

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7RYM \| pdb_00007rym	Download File View File

CD1a-endo-gdTCR complex

Wegrecki, M., Le Nours, J., Rossjohn, J.

(2022) Nat Commun 13: 3872-3872

Released	2022-05-18
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Homo sapiens
Macromolecule	Beta-2-microglobulin (protein) T cell receptor delta variable 1,T cell receptor alpha chain constant (protein) T cell receptor gamma variable 4,T cell receptor beta constant 1 (protein) T-cell surface glycoprotein CD1a (protein)
Unique Ligands	PEG, SO4

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7RYN \| pdb_00007ryn	Download File View File

CD1a-sulfatide-gdTCR complex

Wegrecki, M., Le Nours, J., Rossjohn, J.

(2022) Nat Commun 13: 3872-3872

Released	2022-05-18
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	Beta-2-microglobulin (protein) T cell receptor delta variable 1,T cell receptor alpha chain constant (protein) T cell receptor gamma variable 4,T cell receptor beta constant 1 (protein) T-cell surface glycoprotein CD1a (protein)
Unique Ligands	CIS, EDO, NAG, PEG, SO4

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7RYO \| pdb_00007ryo	Download File View File

CD1a-dideoxymycobactin-gdTCR complex

Wegrecki, M., Le Nours, J., Rossjohn, J.

(2022) Nat Commun 13: 3872-3872

Released	2022-05-18
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	Beta-2-microglobulin (protein) T cell receptor delta variable 1,T cell receptor alpha chain constant (protein) T cell receptor gamma variable 4,T cell receptor beta constant 1 (protein) T-cell surface glycoprotein CD1a (protein)
Unique Ligands	EDO, SO4, WGR

Explore in 3D

7SH4 \| pdb_00007sh4	Download File View File

CD1a-phosphatidylglycerol binary structure

Wegrecki, M., Rossjohn, J.

(2023) Nat Immunol 24: 110-122

Released	2022-10-05
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Beta-2-microglobulin (protein) T-cell surface glycoprotein CD1a (protein)
Unique Ligands	EDO, MES, MW9, NAG, PEG

1 to 18 of 18 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

4U7A | pdb_00004u7a

The carboxy-terminal domain of Erb1 is a seven-bladed beta-propeller that binds RNA.

5CXB | pdb_00005cxb

Structure of Ytm1 bound to the C-terminal domain of Erb1 in P21 21 2 space group

5CXC | pdb_00005cxc

Structure of Ytm1 bound to the C-terminal domain of Erb1 in P 65 2 2 space group

5CYK | pdb_00005cyk

Structure of Ytm1 bound to the C-terminal domain of Erb1-R486E

5VNV | pdb_00005vnv

Crystal structure of Nb.b201

5VNW | pdb_00005vnw

Crystal structure of Nb.b201 bound to human serum albumin

6NUX | pdb_00006nux

CD1a-lipid binary complex

7K0X | pdb_00007k0x

Marsupial T cell receptor Spl_145

7K0Z | pdb_00007k0z

Marsupial T cell receptor Spl_157

7KOZ | pdb_00007koz

CD1a-36:2 SM binary complex

7KP0 | pdb_00007kp0

CD1a-42:1 SM binary complex

7KP1 | pdb_00007kp1

CD1a-42:2 SM binary complex

7L15 | pdb_00007l15

Marsupial T cell receptor Spl_118

7RYL | pdb_00007ryl

T cell receptor CO3

7RYM | pdb_00007rym

CD1a-endo-gdTCR complex

7RYN | pdb_00007ryn

CD1a-sulfatide-gdTCR complex

7RYO | pdb_00007ryo

CD1a-dideoxymycobactin-gdTCR complex

7SH4 | pdb_00007sh4

CD1a-phosphatidylglycerol binary structure

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Symmetry Type

SCOP Classification

4U7A | pdb_00004u7a

5CXB | pdb_00005cxb

5CXC | pdb_00005cxc

5CYK | pdb_00005cyk

5VNV | pdb_00005vnv

5VNW | pdb_00005vnw

6NUX | pdb_00006nux

7K0X | pdb_00007k0x

7K0Z | pdb_00007k0z

7KOZ | pdb_00007koz

7KP0 | pdb_00007kp0

7KP1 | pdb_00007kp1

7L15 | pdb_00007l15

7RYL | pdb_00007ryl

7RYM | pdb_00007rym

7RYN | pdb_00007ryn

7RYO | pdb_00007ryo

7SH4 | pdb_00007sh4