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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Aggarwal, A.K."

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Search Summary

This query matches 128 Structures.

Refinements

Structure Determination Methodology

experimental (128)

Scientific Name of Source Organism

	Homo sapiens (51)
	synthetic construct (20)
	Saccharomyces cerevisiae (14)
	Drosophila melanogaster (7)
	Saccharomyces cerevisiae S288C (6)
	Bacillus amyloliquefaciens (5)
	Severe acute respiratory syndrome coronavirus 2 (5)
	Burkholderia cenocepacia (4)
	Pseudomonas syringae (4)
	Zika virus (4)

More...

Taxonomy

	Eukaryota (82)
	Bacteria (28)
	other sequences (20)
	Riboviria (10)
	Duplodnaviria (4)
	unclassified sequences (3)
	Archaea (2)
	Monodnaviria (2)
	Riboviria (RNA viruses and viroids) (1)

Experimental Method

	X-RAY DIFFRACTION (113)
	SOLUTION NMR (8)
	ELECTRON MICROSCOPY (7)

Polymer Entity Type

	Protein (128)
	DNA (83)
	RNA (3)

Refinement Resolution (Å)

	1.0 - 1.5 (3)
	1.5 - 2.0 (27)
	2.0 - 2.5 (51)
	2.5 - 3.0 (26)
	3.0 - 3.5 (11)
	3.5 - 4.0 (1)
	4.0 - 4.5 (1)

Release Date

	1985 - 1989 (1)
	1990 - 1994 (3)
	1995 - 1999 (9)
	2000 - 2004 (17)
	2005 - 2009 (32)
	2010 - 2014 (16)
	2015 - 2019 (21)
	2020 - 2024 (29)

Enzyme Classification Name

	Transferases (69)
	Hydrolases (28)
	Ligases (2)
	Oxidoreductases (1)

Symmetry Type

	Asymmetric (92)
	Cyclic (35)
	Dihedral (3)

SCOP Classification

	All alpha proteins (21)
	Alpha and beta proteins (a/b) (20)
	Alpha and beta proteins (a+b) (22)
	Multi-domain proteins (alpha and beta) (19)
	Artifacts (10)
	All beta proteins (2)

AllSelected

1 to 25 of 128 Structures

Page 1 of 6

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1AU7 \| pdb_00001au7	Download File View File

PIT-1 MUTANT/DNA COMPLEX

Jacobson, E.M., Li, P., Leon-Del-Rio, A., Rosenfeld, M.G., Aggarwal, A.K.

(1997) Genes Dev 11: 198-212

Released	1998-01-28
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Rattus norvegicus
Macromolecule	PROTEIN PIT-1 (protein) CONSENSUS DNA 25-MER (nucleic acid) DNA (5'-D(CPTPTPCPCPTPCPAPTPGPTPAPTPAPTPAPC PAPTPGPAPGP* GP*A)-3') (nucleic acid)

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1B8I \| pdb_00001b8i	Download File View File

STRUCTURE OF THE HOMEOTIC UBX/EXD/DNA TERNARY COMPLEX

Passner, J.M., Ryoo, H.-D., Shen, L., Mann, R.S., Aggarwal, A.K.

(1999) Nature 397: 714-719

Released	1999-04-12
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Drosophila melanogaster
Macromolecule	PROTEIN (HOMEOBOX PROTEIN EXTRADENTICLE) (protein) PROTEIN (ULTRABITHORAX HOMEOTIC PROTEIN IV) (protein) DNA (5'-D(APCPGPTPGPAPTPTPTPAPTPGPGPCPG)-3') (nucleic acid) DNA (5'-D(GPTPCPGPCPCPAPTPAPAPAPTPCPAPC)-3') (nucleic acid)

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1BAM \| pdb_00001bam	Download File View File

STRUCTURE OF RESTRICTION ENDONUCLEASE BAMHI PHASED AT 1.95 ANGSTROMS RESOLUTION BY MAD ANALYSIS

Aggarwal, A.K., Newman, M.

(1994) Structure 2: 439-452

Released	1995-02-27
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Bacillus amyloliquefaciens
Macromolecule	ENDONUCLEASE BamH I (protein)

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1BHM \| pdb_00001bhm	Download File View File

RESTRICTION ENDONUCLEASE BAMHI COMPLEX WITH DNA

Aggarwal, A.K., Newman, M.

(1995) Science 269: 656-663

Released	1995-07-12
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Bacillus amyloliquefaciens
Macromolecule	PROTEIN (BAMHI (E.C.3.1.21.4)) (protein) DNA (5'-D(TPAPTPGPGPAPTPCPCPAPTPA)-3') (nucleic acid)

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1D2I \| pdb_00001d2i	Download File View File

CRYSTAL STRUCTURE OF RESTRICTION ENDONUCLEASE BGLII COMPLEXED WITH DNA 16-MER

Lukacs, C.M., Kucera, R., Schildkraut, I., Aggarwal, A.K.

(2000) Nat Struct Biol 7: 134-140

Released	2000-02-21
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Bacillus subtilis
Macromolecule	PROTEIN (RESTRICTION ENDONUCLEASE BGLII) (protein) DNA (5'-D(TPAPTPTPAPTPAPGPAPTPCPTPAPTPAPA)-3') (nucleic acid)
Unique Ligands	MG

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1DFM \| pdb_00001dfm	Download File View File

Crystal structure of restriction endonuclease BGLII complexed with DNA 16-mer

Lukacs, C.M., Kucera, R., Schildkraut, I., Aggarwal, A.K.

(2000) Nat Struct Biol 7: 134-140

Released	2000-02-21
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Bacillus subtilis
Macromolecule	ENDONUCLEASE BGLII (protein) DNA (5'-D(TPAPTPTPAPTPAPGPAPTPCPTPAPTPAPA)-3') (nucleic acid)
Unique Ligands	CA

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1ES8 \| pdb_00001es8	Download File View File

Crystal structure of free BglII

Lukacs, C.M., Aggarwal, A.K.

(2001) Nat Struct Biol 8: 126-130

Released	2001-01-17
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Bacillus subtilis
Macromolecule	RESTRICTION ENDONUCLEASE BGLII (protein)
Unique Ligands	ACY

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1ESG \| pdb_00001esg	Download File View File

RESTRICTION ENDONUCLEASE BAMHI BOUND TO A NON-SPECIFIC DNA.

Viadiu, H., Aggarwal, A.K.

(2000) Mol Cell 5: 889-895

Released	2000-05-31
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Bacillus amyloliquefaciens
Macromolecule	TYPE II RESTRICTION ENZYME BAMHI (protein) DNA (5'-D(TPGPAPAPTPCPCPA)-3') (nucleic acid) DNA (5'-D(TPGPGPAPTPTPCPA)-3') (nucleic acid)

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1FOK \| pdb_00001fok	Download File View File

STRUCTURE OF RESTRICTION ENDONUCLEASE FOKI BOUND TO DNA

Aggarwal, D.A., Wah, J.A., Hirsch, L.F., Dorner, I., Schildkraut, A.K.

(1997) Nature 388: 97-100

Released	1997-12-03
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Planomicrobium okeanokoites
Macromolecule	PROTEIN (FOKI RESTRICTION ENDONUCLEASE) (protein) DNA (5'-D(APTPGPAPCPTPAPGPCPGPTPTPAPTPCPAPT PCPCPG)-3') (nucleic acid) DNA (5'-D(TPCPGPGPAPTPGPAPTPAPAPCPGPCPTPAPG PTPCPA)-3') (nucleic acid)

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1IF1 \| pdb_00001if1	Download File View File

INTERFERON REGULATORY FACTOR 1 (IRF-1) COMPLEX WITH DNA

Escalante, C.R., Yie, J., Thanos, D., Aggarwal, A.

(1998) Nature 391: 103-106

Released	1998-02-25
Method	X-RAY DIFFRACTION 3 Å
Organisms	Mus musculus synthetic construct
Macromolecule	PROTEIN (INTERFERON REGULATORY FACTOR 1) (protein) DNA (26-MER) (nucleic acid)

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1JGG \| pdb_00001jgg	Download File View File

Even-skipped Homeodomain Complexed to AT-rich DNA

Hirsch, J.A., Aggarwal, A.K.

(1995) EMBO J 14: 6280-6291

Released	2001-07-06
Method	X-RAY DIFFRACTION 2 Å
Organisms	Drosophila melanogaster
Macromolecule	Segmentation Protein Even-Skipped (protein) 5'-D(PAPAPTPTPCPAPAPTPTPA)-3' (nucleic acid) 5'-D(PTPAPAPTPTPGPAPAPTPT)-3' (nucleic acid)

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1JIH \| pdb_00001jih	Download File View File

Yeast DNA Polymerase ETA

Trincao, J., Johnson, R.E., Escalante, C.R., Prakash, S., Prakash, L., Aggarwal, A.K.

(2001) Mol Cell 8: 417-426

Released	2002-01-09
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	DNA Polymerase ETA (protein)

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1JM4 \| pdb_00001jm4	Download File View File

NMR Structure of P/CAF Bromodomain in Complex with HIV-1 Tat Peptide

Mujtaba, S., He, Y., Zeng, L., Farooq, A., Carlson, J.E., Ott, M., Verdin, E., Zhou, M.-M.

(2002) Mol Cell 9: 575-586

Released	2002-07-17
Method	SOLUTION NMR
Organisms	Homo sapiens Human immunodeficiency virus type 1 group M subtype B (isolate BRU/LAI)
Macromolecule	HIV-1 Tat Peptide (protein) P300/CBP-associated Factor (protein)

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1LMB \| pdb_00001lmb	Download File View File

REFINED 1.8 ANGSTROM CRYSTAL STRUCTURE OF THE LAMBDA REPRESSOR-OPERATOR COMPLEX

Beamer, L.J., Pabo, C.O.

(1992) J Mol Biology 227: 177-196

Released	1991-11-05
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Lambdavirus lambda
Macromolecule	PROTEIN (LAMBDA REPRESSOR) (protein) DNA (5'-D(APAPTPAPCPCPAPCPTPGPGPCPGPGPTPGPA PTPAPT)-3') (nucleic acid) DNA (5'-D(TPAPTPAPTPCPAPCPCPGPCPCPAPGPTPGPG PTPAPT)-3') (nucleic acid)

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1MX3 \| pdb_00001mx3	Download File View File

Crystal structure of CtBP dehydrogenase core holo form

Kumar, V., Carlson, J.E., Ohgi, K.E., Edwards, T.E., Rose, D.W., Escalante, C.R., Aggarwal, A.K.

(2002) Mol Cell 10: 857-869

Released	2002-12-18
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens
Macromolecule	C-terminal binding protein 1 (protein)
Unique Ligands	ACY, NAD

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1N72 \| pdb_00001n72	Download File View File

Structure and Ligand of a Histone Acetyltransferase Bromodomain

Dhalluin, C., Carlson, J.E., Zeng, L., He, C., Aggarwal, A.K., Zhou, M.-M.

(1999) Nature 399: 491-496

Released	2002-12-11
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	HISTONE ACETYLTRANSFERASE (protein)

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1OXJ \| pdb_00001oxj	Download File View File

Crystal structure of the Smaug RNA binding domain

Green, J.B., Gardner, C.D., Wharton, R.P., Aggarwal, A.K.

(2003) Mol Cell 11: 1537-1548

Released	2003-07-08
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Drosophila melanogaster
Macromolecule	RNA-binding protein Smaug (protein)

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1PER \| pdb_00001per	Download File View File

THE COMPLEX BETWEEN PHAGE 434 REPRESSION DNA-BINDING DOMAIN AND OPERATOR SITE OR3: STRUCTURAL DIFFERENCES BETWEEN CONSENSUS AND NON-CONSENSUS HALF-SITES

Rodgers, D.W., Harrison, S.C.

(1993) Structure 1: 227-240

Released	1994-01-31
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Phage 434
Macromolecule	PROTEIN (434 REPRESSOR) (protein) DNA (5'-D(APAPGPTPAPCPAPGPTPTPTPTPTPCPTPTPG PTPAPT)-3') (nucleic acid) DNA (5'-D(TPAPTPAPCPAPAPGPAPAPAPAPAPCPTPGPT PAPCPT)-3') (nucleic acid)

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1Q7F \| pdb_00001q7f	Download File View File

Brain Tumor NHL domain

Edwards, T.A., Wilkinson, B.D., Wharton, R.P., Aggarwal, A.K.

(2003) Genes Dev 17: 2508-2513

Released	2003-10-21
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Drosophila melanogaster
Macromolecule	brain tumor CG10719-PA (protein)

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1S97 \| pdb_00001s97	Download File View File

DPO4 with GT mismatch

Trincao, J., Johnson, R.E., Wolfle, W.T., Escalante, C.R., Prakash, S., Prakash, L., Aggarwal, A.K.

(2004) Nat Struct Mol Biol 11: 457-462

Released	2004-04-27
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Saccharolobus solfataricus
Macromolecule	DNA polymerase IV (protein) 5'-D(GPGPGPGPGPAPAPGPGPAPCPTPG)-3' (nucleic acid) 5'-D(TTPCPAPGPTPAPGPTPCPCPTPTPCPCPCPCP*C)-3' (nucleic acid)
Unique Ligands	CA, DCT

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1S9F \| pdb_00001s9f	Download File View File

DPO with AT matched

Trincao, J., Johnson, R.E., Wolfle, W.T., Escalante, C.R., Prakash, S., Prakash, L., Aggarwal, A.K.

(2004) Nat Struct Mol Biol 11: 457-462

Released	2005-02-15
Method	X-RAY DIFFRACTION 2 Å
Organisms	Saccharolobus solfataricus
Macromolecule	DNA polymerase IV (protein) 5'-D(GPGPGPGPGPAPAPGPGPAPCPTPA)-3' (nucleic acid) 5'-D(TTPCPAPGPTPAPGPTPCPCPTPTPCPCPCPCP*C)-3' (nucleic acid)
Unique Ligands	CA, DDY, MG

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1S9H \| pdb_00001s9h	Download File View File

Crystal Structure of Adeno-associated virus Type 2 Rep40

James, J.A., Escalante, C.R., Yoon-Robarts, M., Edwards, T.A., Linden, R.M., Aggarwal, A.K.

(2003) Structure 11: 1025-1035

Released	2004-05-25
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	adeno-associated virus 2
Macromolecule	Rep 40 protein (protein)

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1SDO \| pdb_00001sdo	Download File View File

Crystal Structure of Restriction Endonuclease BstYI

Townson, S.A., Samuelson, J.C., Vanamee, E.S., Edwards, T.A., Escalante, C.R., Xu, S.Y., Aggarwal, A.K.

(2004) J Mol Biology 338: 725-733

Released	2004-05-11
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	BstYI (protein)

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1T3N \| pdb_00001t3n	Download File View File

Structure of the catalytic core of DNA polymerase Iota in complex with DNA and dTTP

Nair, D.T., Johnson, R.E., Prakash, S., Prakash, L., Aggarwal, A.K.

(2004) Nature 430: 377-380

Released	2004-07-20
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	polymerase (DNA directed) iota (protein) Primer DNA strand (nucleic acid) Template DNA strand (nucleic acid)
Unique Ligands	MG, TTP