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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Abbas, Y.M."

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Search Summary

This query matches 35 Structures.

Refinements

Structure Determination Methodology

experimental (35)

Scientific Name of Source Organism

	Rattus norvegicus (18)
	Homo sapiens (11)
	Legionella pneumophila (9)
	Legionella pneumophila subsp. pneumophila str. Philadelphia 1 (6)
	unidentified (6)
	Sus scrofa (4)
	Mus musculus (2)

Taxonomy

	Eukaryota (35)
	Bacteria (15)
	unclassified sequences (6)

Experimental Method

	ELECTRON MICROSCOPY (22)
	X-RAY DIFFRACTION (13)

Polymer Entity Type

	Protein (35)
	RNA (9)

Refinement Resolution (Å)

	1.5 - 2.0 (6)
	2.0 - 2.5 (2)
	2.5 - 3.0 (4)
	3.0 - 3.5 (2)
	3.5 - 4.0 (13)
	4.0 - 4.5 (5)
	> 4.5 (3)

Release Date

	2010 - 2014 (7)
	2015 - 2019 (6)
	2020 - 2024 (22)

Enzyme Classification Name

Translocases (16)

Membrane Protein Annotation

	mpstruc (7)
	OPM (6)
	PDBTM (6)
	MemProtMD (3)

Symmetry Type

	Asymmetric (32)
	Cyclic (4)
	Dihedral (3)

AllSelected

1 to 25 of 35 Structures

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4HOQ \| pdb_00004hoq	Download File View File

Crystal Structure of Full-Length Human IFIT5

Abbas, Y.M., Pichlmair, A., Gorna, M.W., Superti-Furga, G., Nagar, B.

(2013) Nature 494: 60-64

Released	2013-01-23
Method	X-RAY DIFFRACTION 2.07 Å
Organisms	Homo sapiens
Macromolecule	Interferon-induced protein with tetratricopeptide repeats 5 (protein)

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4HOR \| pdb_00004hor	Download File View File

Crystal Structure of Full-Length Human IFIT5 with 5`-triphosphate Oligocytidine

Abbas, Y.M., Pichlmair, A., Gorna, M.W., Superti-Furga, G., Nagar, B.

(2013) Nature 494: 60-64

Released	2013-01-23
Method	X-RAY DIFFRACTION 1.861 Å
Organisms	Homo sapiens
Macromolecule	Interferon-induced protein with tetratricopeptide repeats 5 (protein) RNA (5'-R((CTP)PCPCPCP*C)-3') (nucleic acid)
Unique Ligands	MG

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4HOS \| pdb_00004hos	Download File View File

Crystal Structure of Full-Length Human IFIT5 with 5`-triphosphate Oligouridine

Abbas, Y.M., Pichlmair, A., Gorna, M.W., Superti-Furga, G., Nagar, B.

(2013) Nature 494: 60-64

Released	2013-01-23
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Interferon-induced protein with tetratricopeptide repeats 5 (protein) RNA (5'-R((UTP)PUPUPU)-3') (nucleic acid)
Unique Ligands	NA

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4HOT \| pdb_00004hot	Download File View File

Crystal Structure of Full-Length Human IFIT5 with 5`-triphosphate Oligoadenine

Abbas, Y.M., Pichlmair, A., Gorna, M.W., Superti-Furga, G., Nagar, B.

(2013) Nature 494: 60-64

Released	2013-01-23
Method	X-RAY DIFFRACTION 2.501 Å
Organisms	Homo sapiens
Macromolecule	Interferon-induced protein with tetratricopeptide repeats 5 (protein) RNA (5'-R((ATP)PAPAPA)-3') (nucleic acid)
Unique Ligands	MG

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4HOU \| pdb_00004hou	Download File View File

Crystal Structure of N-terminal Human IFIT1

Abbas, Y.M., Pichlmair, A., Gorna, M.W., Superti-Furga, G., Nagar, B.

(2013) Nature 494: 60-64

Released	2013-01-30
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens
Macromolecule	Interferon-induced protein with tetratricopeptide repeats 1 (protein)

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4K1N \| pdb_00004k1n	Download File View File

Crystal structure of full-length mouse alphaE-catenin

Ishiyama, N., Ikura, M.

(2013) J Biological Chem 288: 15913-15925

Released	2013-05-01
Method	X-RAY DIFFRACTION 6.5 Å
Organisms	Mus musculus
Macromolecule	Catenin alpha-1 (protein)

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4K1O \| pdb_00004k1o	Download File View File

Crystal structure of the alphaN-catenin actin-binding domain

Ishiyama, N., Ikura, M.

(2013) J Biological Chem 288: 15913-15925

Released	2013-05-01
Method	X-RAY DIFFRACTION 2.603 Å
Organisms	Mus musculus
Macromolecule	Catenin alpha-2 (protein)
Unique Ligands	SO4

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5UDI \| pdb_00005udi	Download File View File

IFIT1 monomeric mutant (L457E/L464E) with m7Gppp-AAAA (syn and anti conformations of cap)

Abbas, Y.M., Martinez-Montero, S., Damha, M.J., Nagar, B.

(2017) Proc Natl Acad Sci U S A 114: E2106-E2115

Released	2017-03-01
Method	X-RAY DIFFRACTION 1.58 Å
Organisms	Homo sapiens unidentified
Macromolecule	Interferon-induced protein with tetratricopeptide repeats 1 (protein) RNA (5'-D((GTA))-R(PAPAPA)-3') (nucleic acid)
Unique Ligands	CA, PGE

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5UDJ \| pdb_00005udj	Download File View File

IFIT1 monomeric mutant (L457E/L464E) with Gppp-AAAA

Abbas, Y.M., Martinez-Montero, S., Damha, M.J., Nagar, B.

(2017) Proc Natl Acad Sci U S A 114: E2106-E2115

Released	2017-03-01
Method	X-RAY DIFFRACTION 1.69 Å
Organisms	Homo sapiens unidentified
Macromolecule	Interferon-induced protein with tetratricopeptide repeats 1 (protein) RNA (5'-D((G3A))-R(PAPAPA)-3') (nucleic acid)
Unique Ligands	CA, PGE

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5UDK \| pdb_00005udk	Download File View File

IFIT1 monomeric mutant (L457E/L464E) with PPP-AAAA

Abbas, Y.M., Martinez-Montero, S., Damha, M.J., Nagar, B.

(2017) Proc Natl Acad Sci U S A 114: E2106-E2115

Released	2017-03-01
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Homo sapiens unidentified
Macromolecule	Interferon-induced protein with tetratricopeptide repeats 1 (protein) RNA (5'-D((ATP))-R(PAPAPA)-3') (nucleic acid)
Unique Ligands	CA, EDO, PEG, PGE

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5UDL \| pdb_00005udl	Download File View File

IFIT1 N216A monomeric mutant (L457E/L464E) with m7Gppp-AAAA (anti conformation of cap)

Abbas, Y.M., Martinez-Montero, S., Damha, M.J., Nagar, B.

(2017) Proc Natl Acad Sci U S A 114: E2106-E2115

Released	2017-03-01
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Homo sapiens unidentified
Macromolecule	Interferon-induced protein with tetratricopeptide repeats 1 (protein) RNA (5'-D((GTA))-R(PAPAPA)-3') (nucleic acid)
Unique Ligands	CA, PGE

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5W5H \| pdb_00005w5h	Download File View File

Human IFIT1 dimer with m7Gppp-AAAA

Abbas, Y.M., Martinez-Montero, S., Damha, M.J., Nagar, B.

To be published

Released	2017-07-19
Method	X-RAY DIFFRACTION 2.79 Å
Organisms	Homo sapiens unidentified
Macromolecule	Interferon-induced protein with tetratricopeptide repeats 1 (protein) RNA (5'-D((GTA))-R(PAPAPA)-3') (nucleic acid)

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5W5I \| pdb_00005w5i	Download File View File

Human IFIT1 dimer with PPP-AAAA

Abbas, Y.M., Martinez-Montero, S., Damha, M.J., Nagar, B.

To be published

Released	2017-06-28
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Homo sapiens unidentified
Macromolecule	Interferon-induced protein with tetratricopeptide repeats 1 (protein) RNA (5'-D((ATP))-R(PAPAPA)-3') (nucleic acid)

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6VQ6 \| pdb_00006vq6	Download File View File

Mammalian V-ATPase from rat brain - composite model of rotational state 1 bound to ADP and SidK (built from focused refinement models)

Abbas, Y.M., Rubinstein, J.L.

(2020) Science 367: 1240-1246

Released	2020-03-18
Method	ELECTRON MICROSCOPY 3.9 Å
Organisms	Legionella pneumophila subsp. pneumophila str. Philadelphia 1 Rattus norvegicus
Macromolecule	Unique protein chains: 16
Unique Ligands	ADP, MG

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6VQ7 \| pdb_00006vq7	Download File View File

Mammalian V-ATPase from rat brain - composite model of rotational state 2 bound to ADP and SidK (built from focused refinement models)

Abbas, Y.M., Rubinstein, J.L.

(2020) Science 367: 1240-1246

Released	2020-03-18
Method	ELECTRON MICROSCOPY 4 Å
Organisms	Legionella pneumophila subsp. pneumophila str. Philadelphia 1 Rattus norvegicus
Macromolecule	Unique protein chains: 16
Unique Ligands	ADP, MG

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6VQ8 \| pdb_00006vq8	Download File View File

Mammalian V-ATPase from rat brain - composite model of rotational state 3 bound to ADP and SidK (built from focused refinement models)

Abbas, Y.M., Rubinstein, J.L.

(2020) Science 367: 1240-1246

Released	2020-03-18
Method	ELECTRON MICROSCOPY 3.9 Å
Organisms	Legionella pneumophila subsp. pneumophila str. Philadelphia 1 Rattus norvegicus
Macromolecule	Unique protein chains: 16
Unique Ligands	ADP

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6VQ9 \| pdb_00006vq9	Download File View File

Mammalian V-ATPase from rat brain soluble V1 region rotational state 1 with SidK and ADP (from focused refinement)

Abbas, Y.M., Rubinstein, J.L.

(2020) Science 367: 1240-1246

Released	2020-03-18
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Legionella pneumophila subsp. pneumophila str. Philadelphia 1 Rattus norvegicus
Macromolecule	Unique protein chains: 6
Unique Ligands	ADP, MG

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6VQA \| pdb_00006vqa	Download File View File

Mammalian V-ATPase from rat brain soluble V1 region rotational state 2 with SidK and ADP (from focused refinement)

Abbas, Y.M., Rubinstein, J.L.

(2020) Science 367: 1240-1246

Released	2020-03-18
Method	ELECTRON MICROSCOPY 3.7 Å
Organisms	Legionella pneumophila subsp. pneumophila str. Philadelphia 1 Rattus norvegicus
Macromolecule	Unique protein chains: 6
Unique Ligands	ADP, MG

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6VQB \| pdb_00006vqb	Download File View File

Mammalian V-ATPase from rat brain soluble V1 region rotational state 2 with SidK and ADP (from focused refinement)

Abbas, Y.M., Rubinstein, J.L.

(2020) Science 367: 1240-1246

Released	2020-03-18
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Legionella pneumophila subsp. pneumophila str. Philadelphia 1 Rattus norvegicus
Macromolecule	Unique protein chains: 6
Unique Ligands	ADP

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6VQC \| pdb_00006vqc	Download File View File

Mammalian V-ATPase from rat brain membrane-embedded Vo region rotational state 1 (from focused refinement)

Abbas, Y.M., Rubinstein, J.L.

(2020) Science 367: 1240-1246

Released	2020-03-18
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Rattus norvegicus
Macromolecule	Unique protein chains: 10

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6VQG \| pdb_00006vqg	Download File View File

Mammalian V-ATPase from rat brain membrane-embedded Vo region rotational state 2 (from focused refinement)

Abbas, Y.M., Rubinstein, J.L.

(2020) Science 367: 1240-1246

Released	2020-03-18
Method	ELECTRON MICROSCOPY 4.2 Å
Organisms	Rattus norvegicus
Macromolecule	Unique protein chains: 10

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6VQH \| pdb_00006vqh	Download File View File

Mammalian V-ATPase from rat brain membrane-embedded Vo region rotational state 3 (from focused refinement)

Abbas, Y.M., Rubinstein, J.L.

(2020) Science 367: 1240-1246

Released	2020-03-18
Method	ELECTRON MICROSCOPY 4.4 Å
Organisms	Rattus norvegicus
Macromolecule	Unique protein chains: 10

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6VQI \| pdb_00006vqi	Download File View File

Mammalian V-ATPase from rat brain collar and peripheral stalks rotational state 1 (from focused refinement)

Abbas, Y.M., Rubinstein, J.L.

(2020) Science 367: 1240-1246

Released	2020-03-18
Method	ELECTRON MICROSCOPY 4.3 Å
Organisms	Rattus norvegicus
Macromolecule	V-type proton ATPase 116 kDa subunit a isoform 1 (protein) V-type proton ATPase subunit C 1 (protein) V-type proton ATPase subunit E 1 (protein) V-type proton ATPase subunit G (protein)

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6VQJ \| pdb_00006vqj	Download File View File

Mammalian V-ATPase from rat brain collar and peripheral stalks rotational state 2 (from focused refinement)

Abbas, Y.M., Rubinstein, J.L.

(2020) Science 367: 1240-1246

Released	2020-03-18
Method	ELECTRON MICROSCOPY 5.7 Å
Organisms	Rattus norvegicus
Macromolecule	V-type proton ATPase 116 kDa subunit a isoform 1 (protein) V-type proton ATPase subunit C 1 (protein) V-type proton ATPase subunit E 1 (protein) V-type proton ATPase subunit G (protein)

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6VQK \| pdb_00006vqk	Download File View File

Mammalian V-ATPase from rat brain collar and peripheral stalks rotational state 3 (from focused refinement)

Abbas, Y.M., Rubinstein, J.L.

(2020) Science 367: 1240-1246

Released	2020-03-18
Method	ELECTRON MICROSCOPY 5.7 Å
Organisms	Rattus norvegicus
Macromolecule	V-type proton ATPase 116 kDa subunit a isoform 1 (protein) V-type proton ATPase subunit C 1 (protein) V-type proton ATPase subunit E 1 (protein) V-type proton ATPase subunit G (protein)

1 to 25 of 35 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

4HOQ | pdb_00004hoq

4HOR | pdb_00004hor

4HOS | pdb_00004hos

4HOT | pdb_00004hot

4HOU | pdb_00004hou

4K1N | pdb_00004k1n

4K1O | pdb_00004k1o

5UDI | pdb_00005udi

5UDJ | pdb_00005udj

5UDK | pdb_00005udk

5UDL | pdb_00005udl

5W5H | pdb_00005w5h

5W5I | pdb_00005w5i

6VQ6 | pdb_00006vq6

6VQ7 | pdb_00006vq7

6VQ8 | pdb_00006vq8

6VQ9 | pdb_00006vq9

6VQA | pdb_00006vqa

6VQB | pdb_00006vqb

6VQC | pdb_00006vqc

6VQG | pdb_00006vqg

6VQH | pdb_00006vqh

6VQI | pdb_00006vqi

6VQJ | pdb_00006vqj

6VQK | pdb_00006vqk