RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Structure Author = "Wrobel, A.G."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 19 Structures.

Refinements

Structure Determination Methodology

experimental (19)

Scientific Name of Source Organism

	Homo sapiens (7)
	Escherichia coli (6)
	Thermotoga maritima (6)
	HIV-1 unknown group (1)

Taxonomy

	Bacteria (12)
	Eukaryota (7)
	Riboviria (1)

Experimental Method

X-RAY DIFFRACTION (19)

Polymer Entity Type

Protein (19)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (5)
	2.0 - 2.5 (10)
	2.5 - 3.0 (1)
	3.0 - 3.5 (2)

Release Date

	2005 - 2009 (13)
	2010 - 2014 (6)

Enzyme Classification Name

	Oxidoreductases (6)
	Transferases (6)

Symmetry Type

	Asymmetric (13)
	Cyclic (6)

SCOP Classification

	All beta proteins (6)
	Alpha and beta proteins (a/b) (6)
	All alpha proteins (1)

AllSelected

1 to 19 of 19 Structures

Page 1 of 1

Sort by

Explore in 3D

1T7L \| pdb_00001t7l	Download File View File

Crystal Structure of Cobalamin-Independent Methionine Synthase from T. maritima

Pejchal, R., Ludwig, M.L.

(2005) PLoS Biol 3: e31

Released	2005-03-01
Method	X-RAY DIFFRACTION 2 Å
Organisms	Thermotoga maritima
Macromolecule	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (protein)
Unique Ligands	MRY, SO4

Explore in 3D

1XDJ \| pdb_00001xdj	Download File View File

Crystal Structure of T. maritima Cobalamin-Independent Methionine Synthase complexed with Zn2+ and Homocysteine

Pejchal, R., Ludwig, M.L.

(2005) PLoS Biol 3: e31

Released	2005-03-01
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Thermotoga maritima
Macromolecule	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (protein)
Unique Ligands	HCS, MRY, SO4, ZN

Explore in 3D

1XPG \| pdb_00001xpg	Download File View File

Crystal Structure of T. maritima Cobalamin-Independent Methionine Synthase complexed with Zn2+ and Methyltetrahydrofolate

Pejchal, R., Ludwig, M.L.

(2005) PLoS Biol 3: e31

Released	2005-03-01
Method	X-RAY DIFFRACTION 2.59 Å
Organisms	Thermotoga maritima
Macromolecule	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (protein)
Unique Ligands	C2F, MRY, SO4, ZN

Explore in 3D

1XR2 \| pdb_00001xr2	Download File View File

Crystal Structure of oxidized T. maritima Cobalamin-Independent Methionine Synthase complexed with Methyltetrahydrofolate

Pejchal, R., Ludwig, M.L.

(2005) PLoS Biol 3: e31

Released	2005-03-01
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Thermotoga maritima
Macromolecule	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (protein)
Unique Ligands	C2F, MRY, SO4

Explore in 3D

1ZP3 \| pdb_00001zp3	Download File View File

E. coli Methylenetetrahydrofolate Reductase (oxidized)

Pejchal, R., Sargeant, R., Ludwig, M.L.

(2005) Biochemistry 44: 11447-11457

Released	2005-08-09
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Escherichia coli
Macromolecule	5,10-methylenetetrahydrofolate reductase (protein)
Unique Ligands	FAD, MPD, SO4

Explore in 3D

1ZP4 \| pdb_00001zp4	Download File View File

Glu28Gln mutant of E. coli Methylenetetrahydrofolate Reductase (oxidized) complex with Methyltetrahydrofolate

Pejchal, R., Sargeant, R., Ludwig, M.L.

(2005) Biochemistry 44: 11447-11457

Released	2005-08-09
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Escherichia coli
Macromolecule	5,10-methylenetetrahydrofolate reductase (protein)
Unique Ligands	C2F, FAD, SO4

Explore in 3D

1ZPT \| pdb_00001zpt	Download File View File

Escherichia coli Methylenetetrahydrofolate Reductase (reduced) complexed with NADH, pH 7.25

Pejchal, R., Sargeant, R., Ludwig, M.L.

(2005) Biochemistry 44: 11447-11457

Released	2005-08-09
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Escherichia coli
Macromolecule	5,10-methylenetetrahydrofolate reductase (protein)
Unique Ligands	FAD, NAI, SO4

Explore in 3D

1ZRQ \| pdb_00001zrq	Download File View File

Escherichia coli Methylenetetrahydrofolate Reductase (reduced) complexed with NADH, pH 6.0

Pejchal, R., Sargeant, R., Ludwig, M.L.

(2005) Biochemistry 44: 11447-11457

Released	2005-08-09
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Escherichia coli
Macromolecule	5,10-methylenetetrahydrofolate reductase (protein)
Unique Ligands	FAD, NAI, SO4

Explore in 3D

2FMN \| pdb_00002fmn	Download File View File

Ala177Val mutant of E. coli Methylenetetrahydrofolate Reductase complex with LY309887

Pejchal, R., Campbell, E., Guenther, B.D., Lennon, B.W., Matthews, R.G., Ludwig, M.L.

(2006) Biochemistry 45: 4808-4818

Released	2006-04-25
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Escherichia coli
Macromolecule	5,10-methylenetetrahydrofolate reductase (protein)
Unique Ligands	4HF, FAD

Explore in 3D

2FMO \| pdb_00002fmo	Download File View File

Ala177Val mutant of E. coli Methylenetetrahydrofolate Reductase

Pejchal, R., Campbell, E., Guenther, B.D., Lennon, B.W., Matthews, R.G., Ludwig, M.L.

(2006) Biochemistry 45: 4808-4818

Released	2006-04-25
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Escherichia coli
Macromolecule	5,10-methylenetetrahydrofolate reductase (protein)
Unique Ligands	FAD, MPD, SO4

Explore in 3D

3BQ5 \| pdb_00003bq5	Download File View File

Crystal Structure of T. maritima Cobalamin-Independent Methionine Synthase complexed with Zn2+ and Homocysteine (Monoclinic)

Pejchal, R., Smith, J.L., Ludwig, M.L.

(2008) Proc Natl Acad Sci U S A 105: 3286-3291

Released	2008-03-11
Method	X-RAY DIFFRACTION 2 Å
Organisms	Thermotoga maritima
Macromolecule	5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferase (protein)
Unique Ligands	EDO, HCS, ZN

Explore in 3D

3BQ6 \| pdb_00003bq6	Download File View File

Crystal Structure of T. maritima Cobalamin-Independent Methionine Synthase complexed with Zn2+ (Monoclinic)

Pejchal, R., Smith, J.L., Ludwig, M.L.

(2008) Proc Natl Acad Sci U S A 105: 3286-3291

Released	2008-03-11
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Thermotoga maritima
Macromolecule	5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferase (protein)
Unique Ligands	ZN

Explore in 3D

3FN0 \| pdb_00003fn0	Download File View File

Crystal structure of HIV-1 neutralizing human Fab Z13e1 in complex with a 12-residue peptide containing the Z13e1 epitope on gp41

Pejchal, R., Wilson, I.A., Zwick, M.B.

(2009) J Virol 83: 8451-8462

Released	2009-06-23
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Envelope polyprotein gp160 (protein) Fab Z13e1 (protein)

Explore in 3D

3MUG \| pdb_00003mug	Download File View File

Crystal structure of human Fab PG16, a broadly reactive and potent HIV-1 neutralizing antibody

Pejchal, R., Walker, L.M., Burton, D.R., Wilson, I.A.

(2010) Proc Natl Acad Sci U S A 107: 11483-11488

Released	2010-06-16
Method	X-RAY DIFFRACTION 2.49 Å
Organisms	Homo sapiens
Macromolecule	Antibody PG16 Heavy Chain (protein) Antibody PG16 Light Chain (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

Explore in 3D

3MUH \| pdb_00003muh	Download File View File

Crystal structure of PG9 light chain

Pejchal, R., Walker, L.M., Burton, D.R., Wilson, I.A.

(2010) Proc Natl Acad Sci U S A 107: 11483-11488

Released	2010-06-16
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	Antibody PG9 light chain (protein)
Unique branched monosaccharides	NAG

Explore in 3D

3Q1S \| pdb_00003q1s	Download File View File

HIV-1 neutralizing antibody Z13e1 in complex with epitope display protein

Stanfield, R.L., Julien, J.-P., Pejchal, R., Gach, J.S., Zwick, M.B., Wilson, I.A.

(2011) J Mol Biology 414: 460-476

Released	2011-11-02
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Homo sapiens
Macromolecule	Interleukin-22 (protein) Z13e1 Fab heavy chain (protein) Z13e1 Fab light chain (protein)
Unique Ligands	GOL, IPA

Explore in 3D

3TV3 \| pdb_00003tv3	Download File View File

Crystal structure of broad and potent HIV-1 neutralizing antibody PGT128 in complex with Man9

Pejchal, R., Wilson, I.A.

(2011) Science 334: 1097-1103

Released	2011-10-19
Method	X-RAY DIFFRACTION 1.29 Å
Organisms	Homo sapiens
Macromolecule	PGT128 heavy chain, Ig gamma-1 chain C region (protein) PGT128 light chain, Ig lambda-2 chain C regions (protein)
Unique Ligands	AML, EPE, GOL
Unique branched monosaccharides	MAN

Explore in 3D

3TWC \| pdb_00003twc	Download File View File

Crystal structure of broad and potent HIV-1 neutralizing antibody PGT127 in complex with Man9

Pejchal, R., Wilson, I.A.

(2011) Science 334: 1097-1103

Released	2011-10-19
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Homo sapiens
Macromolecule	PGT127 heavy chain, Ig gamma-1 chain C region (protein) PGT127 light chain, Ig lambda-2 chain C regions (protein)
Unique Ligands	AML
Unique branched monosaccharides	MAN

Explore in 3D

3TYG \| pdb_00003tyg	Download File View File

Crystal structure of broad and potent HIV-1 neutralizing antibody PGT128 in complex with a glycosylated engineered gp120 outer domain with miniV3 (eODmV3)

Pejchal, R., Huang, P.S., Schief, W.R., Stanfield, R.L., Wilson, I.A.

(2011) Science 334: 1097-1103

Released	2011-10-19
Method	X-RAY DIFFRACTION 3.25 Å
Organisms	HIV-1 unknown group Homo sapiens
Macromolecule	Envelope glycoprotein gp160 (protein) PGT128 heavy chain, Ig gamma-1 chain C region (protein) PGT128 light chain, Ig lambda-2 chain C regions (protein)
Unique branched monosaccharides	BMA, MAN, NAG

1 to 19 of 19 Structures

Page 1 of 1

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1T7L | pdb_00001t7l

Crystal Structure of Cobalamin-Independent Methionine Synthase from T. maritima

1XDJ | pdb_00001xdj

Crystal Structure of T. maritima Cobalamin-Independent Methionine Synthase complexed with Zn2+ and Homocysteine

1XPG | pdb_00001xpg

Crystal Structure of T. maritima Cobalamin-Independent Methionine Synthase complexed with Zn2+ and Methyltetrahydrofolate

1XR2 | pdb_00001xr2

Crystal Structure of oxidized T. maritima Cobalamin-Independent Methionine Synthase complexed with Methyltetrahydrofolate

1ZP3 | pdb_00001zp3

E. coli Methylenetetrahydrofolate Reductase (oxidized)

1ZP4 | pdb_00001zp4

Glu28Gln mutant of E. coli Methylenetetrahydrofolate Reductase (oxidized) complex with Methyltetrahydrofolate

1ZPT | pdb_00001zpt

Escherichia coli Methylenetetrahydrofolate Reductase (reduced) complexed with NADH, pH 7.25

1ZRQ | pdb_00001zrq

Escherichia coli Methylenetetrahydrofolate Reductase (reduced) complexed with NADH, pH 6.0

2FMN | pdb_00002fmn

Ala177Val mutant of E. coli Methylenetetrahydrofolate Reductase complex with LY309887

2FMO | pdb_00002fmo

Ala177Val mutant of E. coli Methylenetetrahydrofolate Reductase

3BQ5 | pdb_00003bq5

Crystal Structure of T. maritima Cobalamin-Independent Methionine Synthase complexed with Zn2+ and Homocysteine (Monoclinic)

3BQ6 | pdb_00003bq6

Crystal Structure of T. maritima Cobalamin-Independent Methionine Synthase complexed with Zn2+ (Monoclinic)

3FN0 | pdb_00003fn0

Crystal structure of HIV-1 neutralizing human Fab Z13e1 in complex with a 12-residue peptide containing the Z13e1 epitope on gp41

3MUG | pdb_00003mug

Crystal structure of human Fab PG16, a broadly reactive and potent HIV-1 neutralizing antibody

3MUH | pdb_00003muh

Crystal structure of PG9 light chain

3Q1S | pdb_00003q1s

HIV-1 neutralizing antibody Z13e1 in complex with epitope display protein

3TV3 | pdb_00003tv3

Crystal structure of broad and potent HIV-1 neutralizing antibody PGT128 in complex with Man9

3TWC | pdb_00003twc

Crystal structure of broad and potent HIV-1 neutralizing antibody PGT127 in complex with Man9

3TYG | pdb_00003tyg

Crystal structure of broad and potent HIV-1 neutralizing antibody PGT128 in complex with a glycosylated engineered gp120 outer domain with miniV3 (eODmV3)

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1T7L | pdb_00001t7l

1XDJ | pdb_00001xdj

1XPG | pdb_00001xpg

1XR2 | pdb_00001xr2

1ZP3 | pdb_00001zp3

1ZP4 | pdb_00001zp4

1ZPT | pdb_00001zpt

1ZRQ | pdb_00001zrq

2FMN | pdb_00002fmn

2FMO | pdb_00002fmo

3BQ5 | pdb_00003bq5

3BQ6 | pdb_00003bq6

3FN0 | pdb_00003fn0

3MUG | pdb_00003mug

3MUH | pdb_00003muh

3Q1S | pdb_00003q1s

3TV3 | pdb_00003tv3

3TWC | pdb_00003twc

3TYG | pdb_00003tyg