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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Wang, D.N."

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Search Summary

This query matches 47 Structures.

Refinements

Structure Determination Methodology

experimental (47)

Scientific Name of Source Organism

	Homo sapiens (18)
	Staphylococcus aureus (10)
	Vibrio cholerae (8)
	Thermotoga maritima MSB8 (5)
	Aquifex aeolicus VF5 (4)
	Lactobacillus acidophilus (4)
	Vibrio cholerae O1 biovar El Tor str. N16961 (3)
	Human papillomavirus type 6 (2)
	Escherichia coli (1)
	Mus musculus (1)

Taxonomy

	Bacteria (35)
	Eukaryota (19)
	Monodnaviria (2)

Experimental Method

	ELECTRON MICROSCOPY (27)
	X-RAY DIFFRACTION (20)

Polymer Entity Type

Protein (47)

Refinement Resolution (Å)

	2.0 - 2.5 (9)
	2.5 - 3.0 (10)
	3.0 - 3.5 (21)
	3.5 - 4.0 (7)

Release Date

	2000 - 2004 (1)
	2005 - 2009 (6)
	2010 - 2014 (2)
	2015 - 2019 (4)
	2020 - 2024 (34)

Enzyme Classification Name

	Hydrolases (2)
	Translocases (2)

Membrane Protein Annotation

	PDBTM (43)
	MemProtMD (35)
	mpstruc (16)
	OPM (12)

Symmetry Type

	Cyclic (29)
	Asymmetric (21)

SCOP Classification

	Membrane and cell surface proteins and peptides (5)
	All beta proteins (1)
	Artifacts (3)

AllSelected

1 to 25 of 47 Structures

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1PW4 \| pdb_00001pw4	Download File View File

Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli

Huang, Y., Lemieux, M.J., Song, J., Auer, M., Wang, D.N.

(2003) Science 301: 616-620

Released	2003-08-05
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Escherichia coli
Macromolecule	Glycerol-3-phosphate transporter (protein)

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2QJU \| pdb_00002qju	Download File View File

Crystal Structure of an NSS Homolog with Bound Antidepressant

Zhou, Z., Karpowich, N.K., Wang, D.N., New York Consortium on Membrane Protein Structure (NYCOMPS)

(2007) Science 317: 1390-1393

Released	2007-08-21
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Aquifex aeolicus VF5
Macromolecule	Transporter (protein)
Unique Ligands	BOG, CL, DSM, LEU, NA

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3GWU \| pdb_00003gwu	Download File View File

Leucine transporter LeuT in complex with sertraline

Zhou, Z., Zhen, J., Karpowich, N.K., Law, C.J., Reith, M.E.A., Wang, D.N.

(2009) Nat Struct Mol Biol 16: 652-657

Released	2009-05-12
Method	X-RAY DIFFRACTION 2.14 Å
Organisms	Aquifex aeolicus VF5
Macromolecule	Transporter (protein)
Unique Ligands	LEU, NA, SRE

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3GWV \| pdb_00003gwv	Download File View File

Leucine transporter LeuT in complex with R-fluoxetine

Zhou, Z., Zhen, J., Karpowich, N.K., Law, C.J., Reith, M.E.A., Wang, D.N.

(2009) Nat Struct Mol Biol 16: 652-657

Released	2009-05-12
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Aquifex aeolicus VF5
Macromolecule	Transporter (protein)
Unique Ligands	LEU, NA, RFX

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3GWW \| pdb_00003gww	Download File View File

Leucine transporter LeuT in complex with S-fluoxetine

Zhou, Z., Zhen, J., Karpowich, N.K., Law, C.J., Reith, M.E.A., Wang, D.N.

(2009) Nat Struct Mol Biol 16: 652-657

Released	2009-05-12
Method	X-RAY DIFFRACTION 2.46 Å
Organisms	Aquifex aeolicus VF5
Macromolecule	Transporter (protein)
Unique Ligands	LEU, NA, SFX

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3KLY \| pdb_00003kly	Download File View File

Pentameric formate channel

Waight, A.B., Wang, D.N., New York Consortium on Membrane Protein Structure (NYCOMPS)

(2010) Nat Struct Mol Biol 17: 31-37

Released	2009-12-15
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Vibrio cholerae
Macromolecule	Putative formate transporter 1 (protein)
Unique Ligands	BOG

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3KLZ \| pdb_00003klz	Download File View File

Pentameric formate channel with formate bound

Waight, A.B., Wang, D.N., New York Consortium on Membrane Protein Structure (NYCOMPS)

(2010) Nat Struct Mol Biol 17: 31-37

Released	2009-12-15
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Vibrio cholerae
Macromolecule	Putative formate transporter 1 (protein)
Unique Ligands	BOG, FMT

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4F35 \| pdb_00004f35	Download File View File

Crystal Structure of a bacterial dicarboxylate/sodium symporter

Mancusso, R.L., Gregorio, G.G., Liu, Q., Wang, D.N.

(2012) Nature 491: 622-626

Released	2012-10-24
Method	X-RAY DIFFRACTION 3.196 Å
Organisms	Vibrio cholerae
Macromolecule	Transporter, NadC family (protein)
Unique Ligands	BNG, CIT, NA

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4HLU \| pdb_00004hlu	Download File View File

Structure of the EcfA-A' heterodimer bound to ADP

Wang, D.N., Karpowich, N.K.

(2013) Proc Natl Acad Sci U S A 110: 2534-2539

Released	2013-02-06
Method	X-RAY DIFFRACTION 2.7003 Å
Organisms	Thermotoga maritima MSB8
Macromolecule	Energy-coupling factor transporter ATP-binding protein EcfA (protein) Putative ABC transporter ATP-binding protein TM_0222 (protein)
Unique Ligands	ACT, ADP

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4ZIR \| pdb_00004zir	Download File View File

Crystal structure of EcfAA' heterodimer bound to AMPPNP

Karpowich, N.K., Cocco, N., Song, J.M., Wang, D.N.

(2015) Nat Struct Mol Biol 22: 565-571

Released	2015-06-10
Method	X-RAY DIFFRACTION 3 Å
Organisms	Thermotoga maritima MSB8
Macromolecule	Energy-coupling factor transporter ATP-binding protein EcfA1 (protein) Energy-coupling factor transporter ATP-binding protein EcfA2 (protein)
Unique Ligands	ANP, CL, MG

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5KBW \| pdb_00005kbw	Download File View File

Crystal structure of TmRibU, the riboflavin-binding S subunit from the Thermotoga maritima ECF transporter

Karpowich, N.K., Wang, D.N., Song, J.M.

(2016) J Mol Biology 428: 3118-3130

Released	2016-06-29
Method	X-RAY DIFFRACTION 2.6093 Å
Organisms	Thermotoga maritima MSB8
Macromolecule	Riboflavin transporter RibU (protein)
Unique Ligands	RBF

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5KC0 \| pdb_00005kc0	Download File View File

Crystal structure of TmRibU, hexagonal crystal form

Karpowich, N.K., Wang, D.N., Song, J.M.

(2016) J Mol Biology 428: 3118-3130

Released	2016-06-29
Method	X-RAY DIFFRACTION 3.2001 Å
Organisms	Thermotoga maritima MSB8
Macromolecule	Riboflavin transporter RibU (protein)
Unique Ligands	BNG, RBF

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5KC4 \| pdb_00005kc4	Download File View File

Structure of TmRibU, orthorhombic crystal form

Karpowich, N.K., Wang, D.N., Song, J.M.

(2016) J Mol Biology 428: 3118-3130

Released	2016-06-29
Method	X-RAY DIFFRACTION 3.4 Å
Organisms	Thermotoga maritima MSB8
Macromolecule	Riboflavin transporter RibU (protein)
Unique Ligands	BNG, RBF

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6OKZ \| pdb_00006okz	Download File View File

Structure of VcINDY bound to Fumarate

Sauer, D.B., Marden, J., Wang, D.N.

(2022) bioRxiv

Released	2020-10-28
Method	X-RAY DIFFRACTION 3.292 Å
Organisms	Vibrio cholerae O1 biovar El Tor str. N16961
Macromolecule	Transporter, NadC family (protein)
Unique Ligands	FUM, NA

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6OL0 \| pdb_00006ol0	Download File View File

Structure of VcINDY bound to Malate

Sauer, D.B., Marden, J.J., Wang, D.N.

(2022) bioRxiv

Released	2020-10-28
Method	X-RAY DIFFRACTION 3.502 Å
Organisms	Vibrio cholerae O1 biovar El Tor str. N16961
Macromolecule	Transporter, NadC family (protein)
Unique Ligands	LMR, NA

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6OL1 \| pdb_00006ol1	Download File View File

Structure of VcINDY in complex with Succinate

Sauer, D.B., Marden, J.J., Wang, D.N.

(2022) bioRxiv

Released	2020-10-28
Method	X-RAY DIFFRACTION 3.088 Å
Organisms	Vibrio cholerae O1 biovar El Tor str. N16961
Macromolecule	Transporter, NadC family (protein)
Unique Ligands	NA, SIN

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6WTW \| pdb_00006wtw	Download File View File

Structure of LaINDY crystallized in the presence of alpha-ketoglutarate and malate

Sauer, D.B., Cocco, N., Marden, J.J., Song, J.M., Wang, D.N., New York Consortium on Membrane Protein Structure (NYCOMPS)

(2020) Elife 9:

Released	2020-09-16
Method	X-RAY DIFFRACTION 2.86 Å
Organisms	Lactobacillus acidophilus
Macromolecule	DASS family sodium-coupled anion symporter (protein)

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6WTX \| pdb_00006wtx	Download File View File

Structure of VcINDY in complex with terephthalate

Sauer, D.B., Marden, J.J., Wang, D.N.

(2020) Elife 9:

Released	2020-09-16
Method	X-RAY DIFFRACTION 3.92 Å
Organisms	Vibrio cholerae
Macromolecule	DASS family sodium-coupled anion symporter (protein)
Unique Ligands	NA, UB7

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6WU1 \| pdb_00006wu1	Download File View File

Structure of apo LaINDY

Sauer, D.B., Marden, J.J., Cocco, N.C., Song, J.M., Wang, D.N., New York Consortium on Membrane Protein Structure (NYCOMPS)

(2020) Elife 9:

Released	2020-09-16
Method	ELECTRON MICROSCOPY 3.09 Å
Organisms	Lactobacillus acidophilus
Macromolecule	DASS family sodium-coupled anion symporter (protein)
Unique Ligands	D10, HEX, OCT

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6WU2 \| pdb_00006wu2	Download File View File

Structure of the LaINDY-malate complex

Sauer, D.B., Marden, J.J., Cocco, N., Song, J.M., Wang, D.N., New York Consortium on Membrane Protein Structure (NYCOMPS)

(2020) Elife 9:

Released	2020-09-16
Method	ELECTRON MICROSCOPY 3.36 Å
Organisms	Lactobacillus acidophilus
Macromolecule	DASS family sodium-coupled anion symporter (protein)
Unique Ligands	D10, HEX, OCT

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6WU3 \| pdb_00006wu3	Download File View File

Structure of VcINDY-Na+ in amphipol

Sauer, D.B., Marden, J.J., Song, J.M., Wang, D.N.

(2020) Elife 9:

Released	2020-09-16
Method	ELECTRON MICROSCOPY 3.16 Å
Organisms	Vibrio cholerae
Macromolecule	VcINDY (protein)

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6WU4 \| pdb_00006wu4	Download File View File

Structure of the LaINDY-alpha-ketoglutarate complex

Sauer, D.B., Marden, J.J., Cocco, N., Song, J.M., Wang, D.N., New York Consortium on Membrane Protein Structure (NYCOMPS)

(2020) Elife 9:

Released	2020-09-16
Method	ELECTRON MICROSCOPY 3.71 Å
Organisms	Lactobacillus acidophilus
Macromolecule	DASS family sodium-coupled anion symporter (protein)

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6WW5 \| pdb_00006ww5	Download File View File

Structure of VcINDY-Na-Fab84 in nanodisc

Sauer, D.B., Marden, J., Song, J.M., Koide, A., Koide, S., Wang, D.N.

(2020) Elife 9:

Released	2020-09-16
Method	ELECTRON MICROSCOPY 3.15 Å
Organisms	Homo sapiens Vibrio cholerae
Macromolecule	DASS family sodium-coupled anion symporter (protein) Fab84 Heavy Chain (protein) Fab84 Light Chain (protein)
Unique Ligands	6PE, HEX, OCT

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7EW5 \| pdb_00007ew5	Download File View File

immune complex of HPV6 L1 pentamer and neutralizing antibody 13H5

Wang, Z.P., Wang, D.N., Gu, Y., Li, S.W.

(2024) Sci Bull (Beijing) 69: 512-525

Released	2022-06-01
Method	X-RAY DIFFRACTION 3.606 Å
Organisms	Human papillomavirus type 6 Mus musculus
Macromolecule	Heavy chain of 13H5 (protein) Light chain of 13H5 (protein) Major capsid protein L1 (protein)