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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Tanaka, T."

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Search Summary

This query matches 150 Structures.

Refinements

Structure Determination Methodology

experimental (150)

Scientific Name of Source Organism

	Methanosarcina mazei Go1 (38)
	synthetic construct (22)
	Halobacterium salinarum NRC-1 (19)
	Homo sapiens (18)
	Escherichia coli (11)
	Escherichia coli K-12 (7)
	Sulfurisphaera tokodaii (7)
	Chlamydomonas reinhardtii (6)
	Rattus norvegicus (5)
	Lactococcus lactis (4)

More...

Taxonomy

	Archaea (66)
	Eukaryota (46)
	Bacteria (36)
	other sequences (22)
	Eukaryota (eukaryotes) (3)
	Riboviria (1)
	Riboviria (RNA viruses and viroids) (1)

Experimental Method

	X-RAY DIFFRACTION (127)
	SOLUTION NMR (19)
	ELECTRON MICROSCOPY (4)

Polymer Entity Type

	Protein (147)
	DNA (25)
	RNA (2)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (25)
	2.0 - 2.5 (71)
	2.5 - 3.0 (22)
	3.0 - 3.5 (7)
	3.5 - 4.0 (1)
	4.0 - 4.5 (1)
	> 4.5 (2)

Release Date

	1990 - 1994 (1)
	1995 - 1999 (6)
	2000 - 2004 (8)
	2005 - 2009 (28)
	2010 - 2014 (19)
	2015 - 2019 (30)
	2020 - 2024 (58)

Enzyme Classification Name

	Lyases (39)
	Hydrolases (15)
	Oxidoreductases (5)
	Transferases (2)
	Isomerases (1)
	Ligases (1)

Membrane Protein Annotation

	PDBTM (34)
	mpstruc (30)
	MemProtMD (26)
	OPM (5)

Symmetry Type

	Asymmetric (81)
	Cyclic (66)
	Dihedral (3)
	Helical (1)

SCOP Classification

	Alpha and beta proteins (a+b) (15)
	All beta proteins (14)
	All alpha proteins (12)
	Membrane and cell surface proteins and peptides (19)
	Alpha and beta proteins (a/b) (8)
	Artifacts (4)
	Multi-domain proteins (alpha and beta) (1)
	Small proteins (2)

AllSelected

1 to 25 of 150 Structures

Page 1 of 6

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1BXD \| pdb_00001bxd	Download File View File

NMR STRUCTURE OF THE HISTIDINE KINASE DOMAIN OF THE E. COLI OSMOSENSOR ENVZ

Tanaka, T., Saha, S.K., Tomomori, C., Ishima, R., Liu, D., Tong, K.I., Park, H., Dutta, R., Qin, L., Swindells, M.B., Yamazaki, T., Ono, A.M., Kainosho, M., Inouye, M., Ikura, M.

(1998) Nature 396: 88-92

Released	1999-10-02
Method	SOLUTION NMR
Organisms	Escherichia coli BL21(DE3)
Macromolecule	PROTEIN (OSMOLARITY SENSOR PROTEIN (ENVZ)) (protein)
Unique Ligands	ANP

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1DMO \| pdb_00001dmo	Download File View File

CALMODULIN, NMR, 30 STRUCTURES

Zhang, M., Tanaka, T., Ikura, M.

(1995) Nat Struct Biol 2: 758-767

Released	1996-08-01
Method	SOLUTION NMR
Organisms	Xenopus laevis
Macromolecule	CALMODULIN (protein)

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1GLV \| pdb_00001glv	Download File View File

THREE-DIMENSIONAL STRUCTURE OF THE GLUTATHIONE SYNTHETASE FROM ESCHERICHIA COLI B AT 2.0 ANGSTROMS RESOLUTION

Yamaguchi, H., Kato, H., Tanaka, T., Katsube, Y.

(1993) J Mol Biology 229: 1083-1100

Released	1994-01-31
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Escherichia coli
Macromolecule	GLUTATHIONE SYNTHASE (protein)

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1HZK \| pdb_00001hzk	Download File View File

SOLUTION STRUCTURES OF C-1027 APOPROTEIN AND ITS COMPLEX WITH THE AROMATIZED CHROMOPHORE

Tanaka, T., Fukuda-Ishisaka, S., Hirama, M., Otani, T.

(2001) J Mol Biology 309: 267-283

Released	2001-05-23
Method	SOLUTION NMR
Organisms	Streptomyces globisporus
Macromolecule	C-1027 APOPROTEIN (protein)

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1HZL \| pdb_00001hzl	Download File View File

SOLUTION STRUCTURES OF C-1027 APOPROTEIN AND ITS COMPLEX WITH THE AROMATIZED CHROMOPHORE

Tanaka, T., Fukuda-Ishisaka, S., Hirama, M., Otani, T.

(2001) J Mol Biology 309: 267-283

Released	2001-05-23
Method	SOLUTION NMR
Organisms	Streptomyces globisporus
Macromolecule	C-1027 APOPROTEIN (protein)
Unique Ligands	ROM

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1IKU \| pdb_00001iku	Download File View File

myristoylated recoverin in the calcium-free state, NMR, 22 structures

Tanaka, T., Ames, J.B., Harvey, T.S., Stryer, L., Ikura, M.

(1995) Nature 376: 444-447

Released	1996-07-11
Method	SOLUTION NMR
Organisms	Bos taurus
Macromolecule	RECOVERIN (protein)
Unique Ligands	MYR

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1JOY \| pdb_00001joy	Download File View File

SOLUTION STRUCTURE OF THE HOMODIMERIC DOMAIN OF ENVZ FROM ESCHERICHIA COLI BY MULTI-DIMENSIONAL NMR.

Tomomori, C., Tanaka, T., Dutta, R., Park, H., Saha, S.K., Zhu, Y., Ishima, R., Liu, D., Tong, K.I., Kurokawa, H., Qian, H., Inouye, M., Ikura, M.

(1999) Nat Struct Biol 6: 729-734

Released	2000-01-12
Method	SOLUTION NMR
Organisms	Escherichia coli
Macromolecule	PROTEIN (ENVZ_ECOLI) (protein)

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1JSA \| pdb_00001jsa	Download File View File

MYRISTOYLATED RECOVERIN WITH TWO CALCIUMS BOUND, NMR, 24 STRUCTURES

Ames, J.B., Ishima, R., Tanaka, T., Gordon, J.I., Stryer, L., Ikura, M.

(1997) Nature 389: 198-202

Released	1997-10-15
Method	SOLUTION NMR
Organisms	Bos taurus
Macromolecule	RECOVERIN (protein)
Unique Ligands	CA, MYR

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1K1V \| pdb_00001k1v	Download File View File

Solution Structure of the DNA-Binding Domain of MafG

Kusunoki, H., Motohashi, H., Katsuoka, F., Morohashi, A., Yamamoto, M., Tanaka, T.

(2002) Nat Struct Biol 9: 252-256

Released	2002-04-10
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	MafG (protein)

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1MUX \| pdb_00001mux	Download File View File

SOLUTION NMR STRUCTURE OF CALMODULIN/W-7 COMPLEX: THE BASIS OF DIVERSITY IN MOLECULAR RECOGNITION, 30 STRUCTURES

Osawa, M., Swindells, M.B., Tanikawa, J., Tanaka, T., Mase, T., Furuya, T., Ikura, M.

(1998) J Mol Biology 276: 165-176

Released	1998-10-14
Method	SOLUTION NMR
Organisms	Xenopus laevis
Macromolecule	CALMODULIN (protein)
Unique Ligands	CA, WW7

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1TO4 \| pdb_00001to4	Download File View File

Structure of the cytosolic Cu,Zn SOD from S. mansoni

Cardoso, R.M.F., Silva, C.H.T.P., Ulian de Araujo, A.P., Tanaka, T., Tanaka, M., Garratt, R.C.

(2004) Acta Crystallogr D Biol Crystallogr 60: 1569-1578

Released	2004-08-31
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Schistosoma mansoni
Macromolecule	Superoxide dismutase (protein)
Unique Ligands	CU, ZN

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1TO5 \| pdb_00001to5	Download File View File

Structure of the cytosolic Cu,Zn SOD from S. mansoni

Cardoso, R.M.F., Silva, C.H.T.P., Ulian de Araujo, A.P., Tanaka, T., Tanaka, M., Garratt, R.C.

(2004) Acta Crystallogr D Biol Crystallogr 60: 1569-1578

Released	2004-08-31
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Schistosoma mansoni
Macromolecule	Superoxide dismutase (protein)
Unique Ligands	ACT, CU, ZN

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1UDY \| pdb_00001udy	Download File View File

Medium-Chain Acyl-CoA Dehydrogenase with 3-Thiaoctanoyl-CoA

Satoh, A., Nakajima, Y., Miyahara, I., Hirotsu, K., Tanaka, T., Nishina, Y., Shiga, K., Tamaoki, H., Setoyama, C., Miura, R.

(2003) J Biochem 134: 297-304

Released	2003-12-09
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Sus scrofa
Macromolecule	Acyl-CoA dehydrogenase, medium-chain specific (protein)
Unique Ligands	CS8, FAD

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1V4R \| pdb_00001v4r	Download File View File

Solution structure of Streptmycal repressor TraR

Tanaka, T., Komatsu, C., Kobayashi, K., Sugai, M., Kataoka, M., Kohno, T.

To be published

Released	2005-03-01
Method	SOLUTION NMR
Organisms	Streptomyces
Macromolecule	Transcriptional Repressor (protein)

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1WLJ \| pdb_00001wlj	Download File View File

human ISG20

Horio, T., Murai, M., Inoue, T., Hamasaki, T., Tanaka, T., Ohgi, T.

(2004) FEBS Lett 577: 111-116

Released	2004-12-21
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	interferon stimulated gene 20kDa (protein)
Unique Ligands	ACT, MN, U5P

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2DI2 \| pdb_00002di2	Download File View File

NMR structure of the HIV-2 nucleocapsid protein

Matsui, T., Kodera, Y., Endoh, H., Miyauchi, E., Komatsu, H., Sato, K., Tanaka, T., Kohno, T., Maeda, T.

(2007) J Biochem 141: 269-277

Released	2007-03-13
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	Nucleocapsid protein p7 (protein)
Unique Ligands	ZN

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2DWL \| pdb_00002dwl	Download File View File

Crystal structure of the PriA protein complexed with oligonucleotides

Sasaki, K., Ose, T., Tanaka, T., Masai, H., Maenaka, K., Kohda, D.

(2007) EMBO J 26: 2584-2593

Released	2006-11-07
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Escherichia coli
Macromolecule	Primosomal protein N (protein) 5'-D(AP(DC))-3' (nucleic acid)

Explore in 3D

2DWM \| pdb_00002dwm	Download File View File

Crystal structure of the PriA protein complexed with oligonucleotides

Sasaki, K., Ose, T., Tanaka, T., Masai, H., Maenaka, K., Kohda, D.

(2007) EMBO J 26: 2584-2593

Released	2006-11-07
Method	X-RAY DIFFRACTION 3.15 Å
Organisms	Escherichia coli
Macromolecule	Primosomal protein N (protein) 5'-D(APT)-3' (nucleic acid)

Explore in 3D

2DWN \| pdb_00002dwn	Download File View File

Crystal structure of the PriA protein complexed with oligonucleotides

Sasaki, K., Ose, T., Tanaka, T., Masai, H., Maenaka, K., Kohda, D.

(2007) EMBO J 26: 2584-2593

Released	2006-11-07
Method	X-RAY DIFFRACTION 3.35 Å
Organisms	Escherichia coli K-12 synthetic construct
Macromolecule	Primosomal protein N' (protein) DNA (5'-D(AG)-3') (nucleic acid)

Explore in 3D

2E1X \| pdb_00002e1x	Download File View File

NMR structure of the HIV-2 nucleocapsid protein

Matsui, T., Kodera, Y., Miyauchi, E., Tanaka, H., Endoh, H., Komatsu, H., Tanaka, T., Kohno, T., Maeda, T.

(2007) Biochem Biophys Res Commun 358: 673-678

Released	2007-06-05
Method	SOLUTION NMR
Organisms	Human immunodeficiency virus type 2 subtype A (isolate Ghana-1)
Macromolecule	Gag-Pol polyprotein (Pr160Gag-Pol) (protein)
Unique Ligands	ZN

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2E85 \| pdb_00002e85	Download File View File

Crystal Structure of the Hydrogenase 3 Maturation protease

Tanaka, T., Kumarevel, T.S., Shinkai, A., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2009) Biochem Biophys Res Commun 389: 310-314

Released	2008-01-22
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Escherichia coli
Macromolecule	Hydrogenase 3 maturation protease (protein)
Unique Ligands	CA

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2EC7 \| pdb_00002ec7	Download File View File

Solution Structure of Human Immunodificiency Virus Type-2 Nucleocapsid Protein

Matsui, T., Kodera, Y., Tanaka, T., Endoh, H., Tanaka, H., Miyauchi, E., Komatsu, H., Kohno, T., Maeda, T.

(2009) Biochemistry 48: 4314-4323

Released	2008-02-19
Method	SOLUTION NMR
Organisms	Human immunodeficiency virus type 2 (ISOLATE GHANA-1)
Macromolecule	Gag polyprotein (Pr55Gag) (protein)
Unique Ligands	ZN

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2GZW \| pdb_00002gzw	Download File View File

Crystal structure of the E.coli CRP-cAMP complex

Kumarevel, T.S., Tanaka, T., Shinkai, A., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2007-05-15
Method	X-RAY DIFFRACTION 2.21 Å
Organisms	Escherichia coli
Macromolecule	Catabolite gene activator (protein)
Unique Ligands	CMP

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2H09 \| pdb_00002h09	Download File View File

Crystal structure of diphtheria toxin repressor like protein from E. coli

Kumarevel, T.S., Tanaka, T., Shinkai, A., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2009) Proteins

Released	2007-05-15
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Escherichia coli
Macromolecule	Transcriptional regulator mntR (protein)

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2IE1 \| pdb_00002ie1	Download File View File

Polyamines stabilize left-handed Z-DNA. We found new type of polyamine which stabilize left-handed Z-DNA by X-ray crystallography

Ohishi, H., Odoko, M., Tsukamoto, K., Hiyama, Y., Maezaki, N., Grzeskowiak, K., Ishida, T., Tanaka, T., Okabe, N., Fukuyama, K.

To be published

Released	2007-10-09
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	DNA (5'-D(DCPDGPDCPDGPDCPDG)-3') (nucleic acid)
Unique Ligands	PAW

1 to 25 of 150 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1BXD | pdb_00001bxd

1DMO | pdb_00001dmo

1GLV | pdb_00001glv

1HZK | pdb_00001hzk

1HZL | pdb_00001hzl

1IKU | pdb_00001iku

1JOY | pdb_00001joy

1JSA | pdb_00001jsa

1K1V | pdb_00001k1v

1MUX | pdb_00001mux

1TO4 | pdb_00001to4

1TO5 | pdb_00001to5

1UDY | pdb_00001udy

1V4R | pdb_00001v4r

1WLJ | pdb_00001wlj

2DI2 | pdb_00002di2

2DWL | pdb_00002dwl

2DWM | pdb_00002dwm

2DWN | pdb_00002dwn

2E1X | pdb_00002e1x

2E85 | pdb_00002e85

2EC7 | pdb_00002ec7

2GZW | pdb_00002gzw

2H09 | pdb_00002h09

2IE1 | pdb_00002ie1